Wall clock time and date at job start Wed Apr 15 2020 11:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86795 * 120.00299 * 2 1 4 4 H 1.48503 * 109.47078 * 269.99868 * 3 2 1 5 5 H 1.48505 * 109.47296 * 29.99442 * 3 2 1 6 6 H 1.48497 * 109.47304 * 149.99866 * 3 2 1 7 7 C 1.38891 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00024 * 325.38470 * 7 2 1 9 9 N 1.37140 * 119.99687 * 145.37366 * 7 2 1 10 10 C 1.34777 * 120.00184 * 241.40701 * 9 7 2 11 11 O 1.21275 * 120.00132 * 0.03909 * 10 9 7 12 12 C 1.50700 * 119.99905 * 180.02562 * 10 9 7 13 13 F 1.39904 * 110.98851 * 43.43462 * 12 10 9 14 14 C 1.55303 * 111.12796 * 279.23402 * 12 10 9 15 15 C 1.54375 * 102.25694 * 207.90603 * 14 12 10 16 16 O 1.43241 * 107.58745 * 21.35713 * 15 14 12 17 17 C 1.43651 * 109.97118 * 1.71214 * 16 15 14 18 18 C 1.39791 * 119.99694 * 61.41789 * 9 7 2 19 19 C 1.38956 * 120.08214 * 90.97487 * 18 9 7 20 20 C 1.38080 * 119.92121 * 179.74419 * 19 18 9 21 21 C 1.38308 * 120.08008 * 0.55214 * 20 19 18 22 22 C 1.38310 * 120.15257 * 359.70077 * 21 20 19 23 23 C 1.38082 * 120.07974 * 0.02562 * 22 21 20 24 24 H 0.96998 * 119.99472 * 4.61428 * 1 2 3 25 25 H 1.09011 * 110.84285 * 89.71534 * 14 12 10 26 26 H 1.08998 * 111.02381 * 326.17981 * 14 12 10 27 27 H 1.08999 * 109.83085 * 261.85009 * 15 14 12 28 28 H 1.08998 * 109.83240 * 140.86868 * 15 14 12 29 29 H 1.08998 * 110.30478 * 94.48664 * 17 16 15 30 30 H 1.08995 * 110.30697 * 216.65504 * 17 16 15 31 31 H 1.08002 * 120.03679 * 359.97438 * 19 18 9 32 32 H 1.08001 * 119.96009 * 180.25129 * 20 19 18 33 33 H 1.08001 * 119.92394 * 179.72081 * 21 20 19 34 34 H 1.07997 * 119.95905 * 179.97438 * 22 21 20 35 35 H 1.08000 * 120.04290 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6527 0.6999 6 1 3.5458 1.4401 0.7000 7 6 2.0087 -1.2028 0.0005 8 1 1.6120 -2.0551 0.5322 9 7 3.1979 -1.3083 -0.6743 10 6 3.3208 -2.1854 -1.6902 11 8 2.3796 -2.8810 -2.0080 12 6 4.6278 -2.3016 -2.4313 13 9 5.7091 -2.3011 -1.5435 14 6 4.7727 -1.1752 -3.4906 15 6 5.6850 -1.8344 -4.5472 16 8 5.5817 -3.2536 -4.3833 17 6 4.6482 -3.5599 -3.3353 18 6 4.2826 -0.5061 -0.3083 19 6 5.1985 -0.9602 0.6329 20 6 6.2717 -0.1673 0.9881 21 6 6.4294 1.0823 0.4166 22 6 5.5169 1.5397 -0.5166 23 6 4.4444 0.7498 -0.8807 24 1 -0.4849 0.8373 -0.0676 25 1 5.2514 -0.2961 -3.0589 26 1 3.8053 -0.9161 -3.9207 27 1 6.7169 -1.5186 -4.3936 28 1 5.3558 -1.5528 -5.5474 29 1 3.6578 -3.7422 -3.7524 30 1 4.9866 -4.4274 -2.7688 31 1 5.0730 -1.9338 1.0833 32 1 6.9861 -0.5213 1.7165 33 1 7.2673 1.7023 0.6996 34 1 5.6428 2.5161 -0.9605 35 1 3.7324 1.1074 -1.6099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342900082.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:41 Heat of formation + Delta-G solvation = -70.333744 kcal Electronic energy + Delta-G solvation = -23220.778131 eV Core-core repulsion = 19713.505011 eV Total energy + Delta-G solvation = -3507.273120 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.98629 -41.48742 -40.18264 -39.22973 -36.63856 -34.43018 -33.01252 -32.06039 -30.54801 -30.43953 -27.61201 -24.55193 -23.75086 -23.42469 -23.28796 -20.97264 -19.84113 -19.04544 -18.09452 -17.70913 -17.21453 -16.82931 -16.63497 -16.35052 -16.16367 -15.78449 -15.31581 -15.11866 -15.07257 -14.65945 -14.61578 -14.40473 -14.13255 -14.04616 -13.30480 -13.07692 -12.85712 -12.76624 -12.70283 -12.25181 -12.07103 -11.85554 -11.50883 -10.92058 -10.80293 -10.58117 -9.83627 -9.59703 -9.26287 -8.61943 -6.49073 0.35491 0.46729 1.10609 1.36096 1.40571 1.49239 2.05192 2.17395 2.58360 2.71803 2.87086 3.00793 3.21798 3.40654 3.59839 3.89367 3.99129 4.07884 4.10221 4.28958 4.48785 4.58710 4.60685 4.64956 4.69193 4.73043 4.83935 4.92030 5.12626 5.45109 5.49710 5.60859 5.66189 5.71556 5.96623 6.05428 6.42989 6.74481 7.04294 7.59818 8.40749 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.009989 C = 0.007689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.327023 B = 2802.283087 C = 3640.512217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.039 3.961 3 Si 0.924 3.076 4 H -0.257 1.257 5 H -0.299 1.299 6 H -0.193 1.193 7 C -0.375 4.375 8 H 0.041 0.959 9 N -0.424 5.424 10 C 0.471 3.529 11 O -0.575 6.575 12 C 0.075 3.925 13 F -0.178 7.178 14 C -0.165 4.165 15 C 0.056 3.944 16 O -0.385 6.385 17 C 0.056 3.944 18 C 0.106 3.894 19 C -0.112 4.112 20 C -0.108 4.108 21 C -0.111 4.111 22 C -0.115 4.115 23 C -0.170 4.170 24 H 0.283 0.717 25 H 0.113 0.887 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.153 0.847 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.953 5.478 -4.111 18.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.170 4.170 3 Si 0.749 3.251 4 H -0.184 1.184 5 H -0.228 1.228 6 H -0.116 1.116 7 C -0.500 4.500 8 H 0.059 0.941 9 N -0.143 5.143 10 C 0.259 3.741 11 O -0.457 6.457 12 C 0.053 3.947 13 F -0.159 7.159 14 C -0.203 4.203 15 C -0.020 4.020 16 O -0.304 6.304 17 C -0.021 4.021 18 C 0.017 3.983 19 C -0.132 4.132 20 C -0.127 4.127 21 C -0.129 4.129 22 C -0.133 4.133 23 C -0.189 4.189 24 H 0.093 0.907 25 H 0.131 0.869 26 H 0.109 0.891 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.103 0.897 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.171 0.829 33 H 0.181 0.819 34 H 0.173 0.827 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 16.389 5.040 -4.273 17.671 hybrid contribution -1.090 0.279 0.594 1.272 sum 15.299 5.319 -3.679 16.610 Atomic orbital electron populations 1.70073 1.09097 1.30080 1.41383 1.26365 0.95099 1.03518 0.91987 0.86738 0.81095 0.77085 0.80165 1.18373 1.22823 1.11609 1.18162 0.96741 0.99033 1.36086 0.94092 1.40990 1.09591 1.35615 1.28097 1.21094 0.89328 0.83208 0.80501 1.90576 1.42174 1.46119 1.66786 1.22609 0.81845 1.00861 0.89421 1.92903 1.55623 1.97502 1.69825 1.23755 1.03164 0.98305 0.95062 1.23366 1.00451 0.79203 0.98999 1.88380 1.63416 1.23818 1.54809 1.23690 0.95284 0.95499 0.87635 1.18246 0.89078 0.92832 0.98120 1.21366 0.95007 1.00207 0.96594 1.21358 0.96749 0.94497 1.00070 1.21540 0.99698 0.95852 0.95787 1.21286 0.93576 1.00131 0.98349 1.21599 1.00585 0.94565 1.02144 0.90713 0.86879 0.89096 0.88423 0.88155 0.89713 0.87620 0.87490 0.82922 0.81862 0.82707 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.91 13.95 21.65 0.30 -52.61 16 2 C 0.04 2.25 5.49 84.91 0.47 2.71 16 3 Si 0.92 40.73 23.36 68.60 1.60 42.33 16 4 H -0.26 -10.44 5.88 99.48 0.59 -9.85 16 5 H -0.30 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.19 -7.70 4.42 99.48 0.44 -7.26 16 7 C -0.38 -22.39 9.06 84.02 0.76 -21.63 16 8 H 0.04 2.80 8.06 -2.91 -0.02 2.78 16 9 N -0.42 -21.41 2.46 -458.90 -1.13 -22.54 16 10 C 0.47 23.10 6.77 87.66 0.59 23.69 16 11 O -0.58 -32.80 15.66 -3.01 -0.05 -32.85 16 12 C 0.07 2.79 1.05 -10.08 -0.01 2.78 16 13 F -0.18 -6.45 13.79 44.97 0.62 -5.83 16 14 C -0.16 -4.93 5.88 31.85 0.19 -4.74 16 15 C 0.06 1.34 7.79 72.45 0.56 1.91 16 16 O -0.38 -11.68 11.36 -148.98 -1.69 -13.37 16 17 C 0.06 1.92 6.85 72.65 0.50 2.42 16 18 C 0.11 4.35 1.95 38.22 0.07 4.43 16 19 C -0.11 -4.05 8.09 22.40 0.18 -3.87 16 20 C -0.11 -2.87 10.04 22.25 0.22 -2.65 16 21 C -0.11 -2.52 10.04 22.30 0.22 -2.30 16 22 C -0.12 -3.02 9.05 22.25 0.20 -2.82 16 23 C -0.17 -6.02 3.68 22.41 0.08 -5.94 16 24 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 25 H 0.11 3.08 6.67 -2.38 -0.02 3.07 16 26 H 0.09 2.84 8.03 -2.39 -0.02 2.82 16 27 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.08 3.10 7.23 -2.39 -0.02 3.08 16 30 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 31 H 0.11 4.03 8.06 -2.91 -0.02 4.01 16 32 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 33 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.12 4.56 4.87 -2.91 -0.01 4.54 16 Total: -1.00 -74.51 283.56 4.42 -70.09 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.72 Total: 20.79 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 4.05 Total: -6.01 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -0.83 Total: -75.15 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -1.74 Total: -46.22 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.62 Total: -5.83 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 1.60 Total: 42.33 kcal Total: -74.51 4.42 -70.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342900082.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.241 kcal (2) G-P(sol) polarization free energy of solvation -74.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds