Wall clock time and date at job start Wed Apr 15 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81405 * 103.00151 * 2 1 4 4 C 1.52998 * 109.47048 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46870 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00445 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00120 * 180.02562 * 5 4 3 8 8 C 1.39929 * 120.00330 * 185.27166 * 7 5 4 9 9 C 1.38871 * 120.06427 * 33.29173 * 8 7 5 10 10 C 1.38112 * 119.92493 * 180.02562 * 9 8 7 11 11 C 1.38282 * 120.07478 * 0.02562 * 10 9 8 12 12 C 1.50697 * 119.93398 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47137 * 89.99687 * 12 11 10 14 14 H 1.08000 * 120.00327 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99965 * 180.27849 * 13 12 11 16 16 N 1.31521 * 120.00072 * 359.71988 * 15 13 12 17 17 Si 1.86807 * 120.00293 * 179.72747 * 15 13 12 18 18 H 1.48499 * 109.46814 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47322 * 119.99684 * 17 15 13 20 20 H 1.48500 * 109.47021 * 239.99886 * 17 15 13 21 21 C 1.38286 * 120.13848 * 0.24863 * 11 10 9 22 22 C 1.38122 * 120.06639 * 359.49448 * 21 11 10 23 23 H 1.09000 * 109.47070 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47240 * 299.99769 * 1 2 3 25 25 H 1.09003 * 109.47238 * 59.99657 * 1 2 3 26 26 H 1.09003 * 109.46692 * 60.00348 * 3 2 1 27 27 H 1.08995 * 109.47386 * 300.00244 * 3 2 1 28 28 H 1.09003 * 109.46894 * 60.00712 * 4 3 2 29 29 H 1.08999 * 109.47633 * 300.00004 * 4 3 2 30 30 H 0.97001 * 119.99823 * 5.28307 * 7 5 4 31 31 H 1.08002 * 120.04284 * 0.02562 * 9 8 7 32 32 H 1.08005 * 119.96508 * 179.97438 * 10 9 8 33 33 H 1.08998 * 109.46787 * 329.99573 * 12 11 10 34 34 H 1.08997 * 109.47216 * 210.00042 * 12 11 10 35 35 H 0.97000 * 119.99850 * 179.97438 * 16 15 13 36 36 H 1.07996 * 119.96599 * 179.74614 * 21 11 10 37 37 H 1.08006 * 120.03084 * 180.25302 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 6 4.0813 3.4083 0.0013 6 8 3.1944 4.2355 0.0017 7 7 5.3702 3.8024 0.0014 8 6 5.6865 5.1608 0.1133 9 6 4.8833 6.0020 0.8722 10 6 5.1979 7.3424 0.9802 11 6 6.3110 7.8473 0.3334 12 6 6.6510 9.3106 0.4531 13 6 7.5563 9.5206 1.6393 14 1 7.8560 8.6786 2.2457 15 6 7.9980 10.7883 1.9535 16 7 7.6335 11.8136 1.2148 17 14 9.1141 11.0497 3.4285 18 1 9.3745 9.7457 4.0894 19 1 10.3991 11.6422 2.9780 20 1 8.4555 11.9692 4.3908 21 6 7.1096 7.0135 -0.4276 22 6 6.8034 5.6709 -0.5353 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8032 2.2371 0.8901 27 1 1.8032 2.2372 -0.8899 28 1 4.1616 1.4703 -0.8892 29 1 4.1609 1.4704 0.8908 30 1 6.0786 3.1443 -0.0763 31 1 4.0136 5.6084 1.3773 32 1 4.5734 7.9973 1.5699 33 1 5.7354 9.8864 0.5883 34 1 7.1575 9.6412 -0.4537 35 1 7.9439 12.7055 1.4361 36 1 7.9759 7.4116 -0.9349 37 1 7.4299 5.0194 -1.1265 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928403011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:40 Heat of formation + Delta-G solvation = -27.121273 kcal Electronic energy + Delta-G solvation = -18198.181762 eV Core-core repulsion = 15258.995651 eV Total energy + Delta-G solvation = -2939.186110 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.40648 -38.26002 -34.97341 -33.38327 -32.91323 -30.47945 -30.30622 -29.34943 -26.93968 -24.93400 -22.98562 -22.40630 -20.68674 -20.00318 -17.68846 -17.23979 -16.31007 -16.19229 -16.16015 -15.04887 -14.75041 -14.53796 -14.23776 -14.09555 -13.96591 -13.46587 -13.11773 -12.90919 -12.81838 -12.60729 -12.24542 -12.05780 -11.77846 -11.38948 -11.29534 -10.84767 -10.60362 -10.42027 -10.38459 -10.10693 -9.87722 -9.45034 -9.26838 -8.43124 -8.31489 -8.08860 -7.41117 -6.04111 -4.08178 1.21979 1.80443 2.03415 2.16534 2.64254 3.11385 3.29036 3.36692 3.41577 4.30135 4.36819 4.52263 4.56232 4.65580 4.75141 4.76184 5.10383 5.29441 5.29919 5.31435 5.40989 5.49791 5.54126 5.91036 6.02652 6.08537 6.17823 6.61826 6.74206 6.86656 7.14509 7.18658 7.43980 7.51129 7.68456 7.85546 7.91761 8.09474 8.32052 8.97441 9.55644 11.05509 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.044345 B = 0.002617 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.266265 B =10696.251398 C =10779.857276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.269 6.269 3 C -0.068 4.068 4 C -0.124 4.124 5 C 0.513 3.487 6 O -0.522 6.522 7 N -0.667 5.667 8 C 0.103 3.897 9 C -0.117 4.117 10 C -0.108 4.108 11 C -0.041 4.041 12 C 0.047 3.953 13 C -0.510 4.510 14 H 0.058 0.942 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.108 4.108 22 C -0.142 4.142 23 H 0.101 0.899 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.407 0.593 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.261 0.739 36 H 0.122 0.878 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.911 -22.790 -3.466 24.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.044 6.044 3 C -0.217 4.217 4 C -0.165 4.165 5 C 0.299 3.701 6 O -0.397 6.397 7 N -0.311 5.311 8 C 0.010 3.990 9 C -0.137 4.137 10 C -0.127 4.127 11 C -0.042 4.042 12 C 0.010 3.990 13 C -0.548 4.548 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.127 4.127 22 C -0.163 4.163 23 H 0.120 0.880 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.242 0.758 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.140 0.860 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.911 -22.938 -3.467 24.852 hybrid contribution 0.183 0.902 0.758 1.193 sum -8.728 -22.036 -2.709 23.856 Atomic orbital electron populations 1.23372 0.93498 1.06532 1.05274 1.86749 1.08195 1.11256 1.98175 1.23102 0.98111 0.93670 1.06802 1.21347 0.95609 0.93648 1.05866 1.20539 0.82526 0.90879 0.76187 1.90747 1.46745 1.54397 1.47825 1.43381 1.07829 1.07140 1.72796 1.17515 0.97963 0.82887 1.00595 1.20970 0.99983 0.93855 0.98864 1.20999 0.97641 0.94211 0.99821 1.20725 0.92057 0.99118 0.92279 1.18362 0.97391 0.85406 0.97824 1.21098 1.29004 0.93133 1.11591 0.92408 1.25026 0.96510 0.96057 0.96847 1.69971 1.45204 0.99258 1.38876 0.86482 0.80401 0.78240 0.82607 1.19679 1.20951 1.20949 1.20901 0.99833 0.92127 0.99836 1.20747 0.98180 0.96057 1.01267 0.88002 0.90271 0.90294 0.89027 0.89047 0.87797 0.87662 0.75833 0.85936 0.86068 0.95274 0.95283 0.92898 0.85954 0.86752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.76 101.05 1.09 0.38 16 2 S -0.27 -2.23 22.38 -107.50 -2.41 -4.63 16 3 C -0.07 -0.60 5.23 37.16 0.19 -0.40 16 4 C -0.12 -0.99 5.71 -27.88 -0.16 -1.15 16 5 C 0.51 6.20 7.57 -10.98 -0.08 6.12 16 6 O -0.52 -8.43 13.67 5.55 0.08 -8.35 16 7 N -0.67 -7.92 5.34 -9.86 -0.05 -7.97 16 8 C 0.10 1.66 6.28 -83.70 -0.53 1.13 16 9 C -0.12 -2.14 8.66 -39.39 -0.34 -2.48 16 10 C -0.11 -2.20 9.69 -39.61 -0.38 -2.59 16 11 C -0.04 -0.90 5.07 -104.59 -0.53 -1.43 16 12 C 0.05 1.21 5.10 -29.04 -0.15 1.06 16 13 C -0.51 -14.26 9.09 -34.44 -0.31 -14.58 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 17 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C -0.11 -2.08 9.69 -39.61 -0.38 -2.46 16 22 C -0.14 -2.29 9.96 -39.39 -0.39 -2.68 16 23 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 24 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16 25 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 26 H 0.09 0.86 8.10 -51.92 -0.42 0.44 16 27 H 0.09 0.86 8.10 -51.93 -0.42 0.43 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.41 3.29 8.82 -40.82 -0.36 2.93 16 31 H 0.12 2.20 6.42 -52.49 -0.34 1.86 16 32 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 33 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 34 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 36 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 37 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 332.33 15.07 5.01 5.01 Total: -1.00 -32.44 332.33 -9.04 -41.47 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.30 Total: 1.27 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -2.08 Total: -17.56 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.68 Total: -33.69 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.08 Total: -8.35 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -2.23 SS G_CDS: -2.41 Total: -4.63 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.44 -9.04 -41.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928403011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.353 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds