Wall clock time and date at job start Wed Apr 15 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81405 * 103.00151 * 2 1 4 4 C 1.52998 * 109.47048 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46870 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00445 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00120 * 180.02562 * 5 4 3 8 8 C 1.39929 * 120.00330 * 185.27166 * 7 5 4 9 9 C 1.38871 * 120.06427 * 33.29173 * 8 7 5 10 10 C 1.38112 * 119.92493 * 180.02562 * 9 8 7 11 11 C 1.38282 * 120.07478 * 0.02562 * 10 9 8 12 12 C 1.50697 * 119.93398 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47137 * 89.99687 * 12 11 10 14 14 H 1.08000 * 120.00327 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99965 * 180.27849 * 13 12 11 16 16 N 1.31521 * 120.00072 * 359.71988 * 15 13 12 17 17 Si 1.86807 * 120.00293 * 179.72747 * 15 13 12 18 18 H 1.48499 * 109.46814 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47322 * 119.99684 * 17 15 13 20 20 H 1.48500 * 109.47021 * 239.99886 * 17 15 13 21 21 C 1.38286 * 120.13848 * 0.24863 * 11 10 9 22 22 C 1.38122 * 120.06639 * 359.49448 * 21 11 10 23 23 H 1.09000 * 109.47070 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47240 * 299.99769 * 1 2 3 25 25 H 1.09003 * 109.47238 * 59.99657 * 1 2 3 26 26 H 1.09003 * 109.46692 * 60.00348 * 3 2 1 27 27 H 1.08995 * 109.47386 * 300.00244 * 3 2 1 28 28 H 1.09003 * 109.46894 * 60.00712 * 4 3 2 29 29 H 1.08999 * 109.47633 * 300.00004 * 4 3 2 30 30 H 0.97001 * 119.99823 * 5.28307 * 7 5 4 31 31 H 1.08002 * 120.04284 * 0.02562 * 9 8 7 32 32 H 1.08005 * 119.96508 * 179.97438 * 10 9 8 33 33 H 1.08998 * 109.46787 * 329.99573 * 12 11 10 34 34 H 1.08997 * 109.47216 * 210.00042 * 12 11 10 35 35 H 0.97000 * 119.99850 * 179.97438 * 16 15 13 36 36 H 1.07996 * 119.96599 * 179.74614 * 21 11 10 37 37 H 1.08006 * 120.03084 * 180.25302 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 6 4.0813 3.4083 0.0013 6 8 3.1944 4.2355 0.0017 7 7 5.3702 3.8024 0.0014 8 6 5.6865 5.1608 0.1133 9 6 4.8833 6.0020 0.8722 10 6 5.1979 7.3424 0.9802 11 6 6.3110 7.8473 0.3334 12 6 6.6510 9.3106 0.4531 13 6 7.5563 9.5206 1.6393 14 1 7.8560 8.6786 2.2457 15 6 7.9980 10.7883 1.9535 16 7 7.6335 11.8136 1.2148 17 14 9.1141 11.0497 3.4285 18 1 9.3745 9.7457 4.0894 19 1 10.3991 11.6422 2.9780 20 1 8.4555 11.9692 4.3908 21 6 7.1096 7.0135 -0.4276 22 6 6.8034 5.6709 -0.5353 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8032 2.2371 0.8901 27 1 1.8032 2.2372 -0.8899 28 1 4.1616 1.4703 -0.8892 29 1 4.1609 1.4704 0.8908 30 1 6.0786 3.1443 -0.0763 31 1 4.0136 5.6084 1.3773 32 1 4.5734 7.9973 1.5699 33 1 5.7354 9.8864 0.5883 34 1 7.1575 9.6412 -0.4537 35 1 7.9439 12.7055 1.4361 36 1 7.9759 7.4116 -0.9349 37 1 7.4299 5.0194 -1.1265 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928403011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:40 Heat of formation + Delta-G solvation = -46.217556 kcal Electronic energy + Delta-G solvation = -18199.009839 eV Core-core repulsion = 15258.995651 eV Total energy + Delta-G solvation = -2940.014187 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.53924 -39.63577 -36.33188 -34.99479 -34.04716 -32.13811 -31.78100 -29.82851 -28.61623 -26.12812 -24.63724 -23.82301 -22.07834 -21.20397 -18.76134 -18.49710 -18.28730 -17.05341 -16.89322 -16.78901 -15.94072 -15.90398 -15.58144 -14.99922 -14.72283 -14.55187 -14.41575 -14.28615 -14.10560 -13.66040 -13.58827 -13.28900 -13.18971 -12.84444 -12.63769 -12.46107 -12.41347 -12.02753 -11.65558 -11.54106 -11.13054 -11.02666 -10.79570 -10.61208 -9.77707 -8.88126 -8.70879 -8.18786 -6.33536 0.41213 0.55869 0.62036 1.39531 1.40065 1.53507 1.58680 1.59085 2.13730 2.39849 2.99594 3.10452 3.58981 3.83082 3.91077 4.07683 4.13902 4.31440 4.34639 4.37430 4.49350 4.61194 4.63905 4.68284 4.74814 4.85892 4.88947 5.10573 5.31630 5.33231 5.41217 5.47932 5.59635 5.75253 6.07346 6.11346 6.24101 6.45601 6.79486 7.14173 7.35032 8.89441 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.044345 B = 0.002617 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.266265 B =10696.251398 C =10779.857276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.285 6.285 3 C -0.066 4.066 4 C -0.110 4.110 5 C 0.513 3.487 6 O -0.565 6.565 7 N -0.654 5.654 8 C 0.119 3.881 9 C -0.124 4.124 10 C -0.121 4.121 11 C -0.075 4.075 12 C 0.056 3.944 13 C -0.525 4.525 14 H 0.056 0.944 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.967 3.033 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.278 1.278 21 C -0.114 4.114 22 C -0.127 4.127 23 H 0.116 0.884 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.430 0.570 31 H 0.124 0.876 32 H 0.109 0.891 33 H -0.002 1.002 34 H 0.007 0.993 35 H 0.265 0.735 36 H 0.126 0.874 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.052 -25.998 -3.293 27.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.060 6.060 3 C -0.215 4.215 4 C -0.151 4.151 5 C 0.301 3.699 6 O -0.443 6.443 7 N -0.301 5.301 8 C 0.025 3.975 9 C -0.144 4.144 10 C -0.140 4.140 11 C -0.076 4.076 12 C 0.019 3.981 13 C -0.563 4.563 14 H 0.074 0.926 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.792 3.208 18 H -0.188 1.188 19 H -0.200 1.200 20 H -0.204 1.204 21 C -0.133 4.133 22 C -0.147 4.147 23 H 0.134 0.866 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.269 0.731 31 H 0.142 0.858 32 H 0.127 0.873 33 H 0.017 0.983 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.144 0.856 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.037 -26.198 -3.301 27.602 hybrid contribution -0.197 1.776 0.647 1.901 sum -8.234 -24.422 -2.654 25.909 Atomic orbital electron populations 1.23462 0.91547 1.07626 1.05733 1.86749 1.10481 1.10536 1.98191 1.23024 0.98695 0.93950 1.05793 1.21351 0.95199 0.90400 1.08126 1.21292 0.81778 0.92311 0.74499 1.90746 1.48000 1.55992 1.49587 1.43328 1.08837 1.05700 1.72237 1.17603 0.96816 0.84672 0.98402 1.20994 1.00577 0.93199 0.99634 1.20918 0.97442 0.95356 1.00281 1.20409 0.94283 0.97276 0.95635 1.18097 0.95394 0.88266 0.96299 1.21407 1.29354 0.93332 1.12236 0.92612 1.25969 0.98059 0.95698 0.99928 1.70097 1.46499 0.99808 1.40747 0.85360 0.78349 0.78407 0.78715 1.18807 1.19997 1.20368 1.21002 0.99528 0.93428 0.99331 1.21058 0.98165 0.95051 1.00446 0.86578 0.89894 0.89822 0.90170 0.90047 0.85207 0.85435 0.73088 0.85804 0.87286 0.98325 0.97498 0.92587 0.85583 0.82193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 10.76 113.37 1.22 0.07 16 2 S -0.29 -4.09 22.38 -56.49 -1.26 -5.36 16 3 C -0.07 -1.03 5.23 71.98 0.38 -0.65 16 4 C -0.11 -1.40 5.71 29.85 0.17 -1.23 16 5 C 0.51 11.07 7.57 87.66 0.66 11.74 16 6 O -0.57 -17.67 13.67 -3.04 -0.04 -17.71 16 7 N -0.65 -13.24 5.34 -303.51 -1.62 -14.86 16 8 C 0.12 3.56 6.28 38.15 0.24 3.80 16 9 C -0.12 -4.51 8.66 22.39 0.19 -4.32 16 10 C -0.12 -5.14 9.69 22.25 0.22 -4.93 16 11 C -0.08 -3.43 5.07 -19.84 -0.10 -3.53 16 12 C 0.06 3.09 5.10 29.10 0.15 3.24 16 13 C -0.53 -30.38 9.09 25.60 0.23 -30.15 16 14 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 15 C 0.00 0.08 5.46 84.65 0.46 0.54 16 16 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 17 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 18 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 21 C -0.11 -4.33 9.69 22.25 0.22 -4.12 16 22 C -0.13 -3.74 9.96 22.39 0.22 -3.51 16 23 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.08 1.42 8.10 -2.39 -0.02 1.41 16 27 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 28 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.43 4.86 8.82 -92.71 -0.82 4.04 16 31 H 0.12 4.46 6.42 -2.91 -0.02 4.44 16 32 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 33 H 0.00 -0.09 8.08 -2.39 -0.02 -0.11 16 34 H 0.01 0.39 8.08 -2.39 -0.02 0.37 16 35 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 37 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -73.08 332.33 3.89 -69.19 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.25 Total: 11.69 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: 4.26 Total: -33.05 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -1.34 Total: -71.39 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.04 Total: -17.71 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: -4.09 SS G_CDS: -1.26 Total: -5.36 kcal Total: -73.08 3.89 -69.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928403011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.970 kcal (2) G-P(sol) polarization free energy of solvation -73.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds