Wall clock time and date at job start Wed Apr 15 2020 11:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81395 * 103.00068 * 2 1 4 4 C 1.53002 * 109.47373 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.47700 * 179.97438 * 4 3 2 6 6 O 1.21300 * 119.99528 * 4.76616 * 5 4 3 7 7 N 1.34767 * 120.00254 * 184.76685 * 5 4 3 8 8 C 1.37101 * 120.00523 * 5.02165 * 7 5 4 9 9 H 1.08005 * 119.99575 * 38.30976 * 8 7 5 10 10 C 1.38943 * 120.00213 * 218.31489 * 8 7 5 11 11 N 1.31402 * 120.00322 * 20.05838 * 10 8 7 12 12 Si 1.86803 * 119.99819 * 200.05941 * 10 8 7 13 13 H 1.48505 * 109.47226 * 60.00105 * 12 10 8 14 14 H 1.48500 * 109.47030 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47211 * 299.99937 * 12 10 8 16 16 C 1.46505 * 120.00073 * 185.02076 * 7 5 4 17 17 C 1.50700 * 109.47061 * 270.00235 * 16 7 5 18 18 C 1.38238 * 120.00053 * 89.99955 * 17 16 7 19 19 C 1.38236 * 119.99811 * 179.97438 * 18 17 16 20 20 C 1.38238 * 120.00143 * 359.97134 * 19 18 17 21 21 C 1.38229 * 119.99883 * 0.28318 * 20 19 18 22 22 C 1.38233 * 120.00005 * 359.51048 * 21 20 19 23 23 H 1.09000 * 109.47157 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47206 * 299.99818 * 1 2 3 25 25 H 1.09001 * 109.46698 * 60.00157 * 1 2 3 26 26 H 1.09004 * 109.47149 * 60.00079 * 3 2 1 27 27 H 1.08999 * 109.47077 * 299.99669 * 3 2 1 28 28 H 1.09000 * 109.46922 * 59.99581 * 4 3 2 29 29 H 1.09001 * 109.47250 * 300.00675 * 4 3 2 30 30 H 0.96996 * 120.00407 * 174.97624 * 11 10 8 31 31 H 1.08997 * 109.47158 * 150.00400 * 16 7 5 32 32 H 1.08999 * 109.47101 * 29.99724 * 16 7 5 33 33 H 1.07998 * 120.00037 * 359.97371 * 18 17 16 34 34 H 1.08002 * 119.99689 * 180.02562 * 19 18 17 35 35 H 1.07998 * 119.99682 * 179.97438 * 20 19 18 36 36 H 1.08000 * 120.00060 * 179.72192 * 21 20 19 37 37 H 1.08006 * 120.00299 * 180.27604 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 6 4.0814 3.4082 0.0000 6 8 3.1978 4.2347 0.0864 7 7 5.3663 3.8031 -0.0966 8 6 6.3554 2.8752 -0.2976 9 1 6.1814 2.0337 -0.9518 10 6 7.5815 3.0175 0.3402 11 7 7.6823 3.7757 1.4087 12 14 9.0869 2.1309 -0.3212 13 1 9.3524 2.5768 -1.7126 14 1 10.2609 2.4446 0.5323 15 1 8.8438 0.6660 -0.3087 16 6 5.7063 5.2239 0.0133 17 6 5.6727 5.8556 -1.3545 18 6 4.4997 6.4107 -1.8309 19 6 4.4691 6.9906 -3.0854 20 6 5.6117 7.0161 -3.8632 21 6 6.7832 6.4564 -3.3889 22 6 6.8149 5.8802 -2.1328 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8031 2.2371 0.8900 27 1 1.8032 2.2370 -0.8900 28 1 4.1616 1.4702 -0.8891 29 1 4.1609 1.4703 0.8908 30 1 8.5197 3.8178 1.8964 31 1 6.7054 5.3268 0.4365 32 1 4.9843 5.7212 0.6609 33 1 3.6073 6.3912 -1.2231 34 1 3.5528 7.4247 -3.4574 35 1 5.5876 7.4688 -4.8434 36 1 7.6747 6.4722 -3.9984 37 1 7.7315 5.4468 -1.7603 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144053228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:51 Heat of formation + Delta-G solvation = -16.342276 kcal Electronic energy + Delta-G solvation = -19487.676575 eV Core-core repulsion = 16548.957877 eV Total energy + Delta-G solvation = -2938.718698 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.11405 -38.00940 -34.97164 -32.31627 -31.81627 -30.59301 -30.26974 -28.86943 -26.08156 -24.98000 -23.05493 -21.90498 -20.60358 -19.10060 -17.02452 -16.49698 -15.92650 -15.49633 -15.06558 -14.63554 -14.55146 -14.37718 -14.23600 -13.57540 -13.54344 -13.12156 -12.93843 -12.80355 -12.10404 -12.07720 -11.89895 -11.49337 -11.38962 -11.28096 -10.96725 -10.79426 -10.65673 -10.48309 -10.33303 -10.15897 -9.74718 -9.22973 -8.61520 -8.32007 -8.06376 -7.58501 -7.48500 -6.46265 -4.15955 1.86636 1.97151 2.00904 2.82756 3.08090 3.16826 3.19254 3.83194 4.04015 4.34183 4.88398 4.93261 5.18906 5.19325 5.42837 5.47236 5.48209 5.51474 5.58888 5.72398 5.88180 5.99910 6.11028 6.18412 6.29142 6.41726 6.50347 6.59803 6.62572 6.76477 7.04406 7.06255 7.13696 7.38888 7.46571 7.63296 7.85535 8.28643 8.99725 9.40651 9.84718 10.56300 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.012431 B = 0.006448 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.982331 B = 4341.578458 C = 5914.746837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.280 6.280 3 C -0.056 4.056 4 C -0.102 4.102 5 C 0.479 3.521 6 O -0.606 6.606 7 N -0.429 5.429 8 C -0.340 4.340 9 H 0.089 0.911 10 C 0.049 3.951 11 N -0.859 5.859 12 Si 0.910 3.090 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.270 1.270 16 C 0.146 3.854 17 C -0.077 4.077 18 C -0.103 4.103 19 C -0.133 4.133 20 C -0.135 4.135 21 C -0.133 4.133 22 C -0.097 4.097 23 H 0.096 0.904 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.273 0.727 31 H 0.114 0.886 32 H 0.063 0.937 33 H 0.125 0.875 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.905 -0.366 -4.805 6.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.054 6.054 3 C -0.204 4.204 4 C -0.143 4.143 5 C 0.266 3.734 6 O -0.493 6.493 7 N -0.146 5.146 8 C -0.468 4.468 9 H 0.107 0.893 10 C -0.158 4.158 11 N -0.495 5.495 12 Si 0.737 3.263 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.195 1.195 16 C 0.023 3.977 17 C -0.079 4.079 18 C -0.121 4.121 19 C -0.151 4.151 20 C -0.153 4.153 21 C -0.151 4.151 22 C -0.115 4.115 23 H 0.115 0.885 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.481 -0.734 -4.626 6.482 hybrid contribution 0.079 0.454 -0.363 0.586 sum -4.402 -0.280 -4.989 6.659 Atomic orbital electron populations 1.23309 0.94844 1.05874 1.04750 1.86790 1.06680 1.13817 1.98129 1.23157 1.00396 0.91237 1.05622 1.21056 0.92045 0.96318 1.04865 1.20246 0.83406 0.89654 0.80071 1.90503 1.47607 1.54728 1.56422 1.43323 1.04675 1.04725 1.61847 1.19380 0.92563 1.07102 1.27774 0.89335 1.25365 0.99622 0.96693 0.94092 1.69810 1.27432 1.38091 1.14208 0.86251 0.80772 0.80077 0.79249 1.19570 1.20785 1.19527 1.20441 1.04314 0.82009 0.90962 1.20613 0.92863 0.96064 0.98315 1.21281 0.98128 0.97070 0.95671 1.21048 0.97787 1.01158 0.95142 1.20963 0.93516 1.01467 0.99369 1.21045 0.97722 0.99944 0.96353 1.21118 0.98632 0.97896 0.93897 0.88534 0.90689 0.90753 0.89703 0.90064 0.89472 0.88683 0.91671 0.86878 0.91849 0.85730 0.87047 0.87155 0.86956 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 10.76 101.05 1.09 -0.25 16 2 S -0.28 -4.31 22.38 -107.50 -2.41 -6.71 16 3 C -0.06 -0.97 5.24 37.16 0.19 -0.77 16 4 C -0.10 -2.03 4.60 -27.88 -0.13 -2.16 16 5 C 0.48 11.21 7.61 -10.99 -0.08 11.13 16 6 O -0.61 -14.97 14.81 5.54 0.08 -14.88 16 7 N -0.43 -10.38 2.50 -116.10 -0.29 -10.67 16 8 C -0.34 -8.30 8.57 -14.93 -0.13 -8.42 16 9 H 0.09 2.11 6.99 -52.48 -0.37 1.74 16 10 C 0.05 1.18 4.98 -17.47 -0.09 1.09 16 11 N -0.86 -21.66 11.43 55.49 0.63 -21.03 16 12 Si 0.91 18.84 29.60 -169.99 -5.03 13.81 16 13 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 14 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 15 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 16 C 0.15 3.40 5.09 -5.19 -0.03 3.38 16 17 C -0.08 -1.63 5.46 -104.62 -0.57 -2.20 16 18 C -0.10 -2.03 9.57 -39.58 -0.38 -2.41 16 19 C -0.13 -2.27 10.05 -39.58 -0.40 -2.66 16 20 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 21 C -0.13 -2.25 10.05 -39.59 -0.40 -2.65 16 22 C -0.10 -1.90 9.70 -39.58 -0.38 -2.29 16 23 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 26 H 0.08 1.51 8.05 -51.92 -0.42 1.09 16 27 H 0.08 1.42 8.14 -51.92 -0.42 1.00 16 28 H 0.09 1.71 7.32 -51.93 -0.38 1.33 16 29 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 30 H 0.27 6.53 8.32 -40.82 -0.34 6.19 16 31 H 0.11 2.78 5.47 -51.93 -0.28 2.49 16 32 H 0.06 1.51 7.44 -51.93 -0.39 1.13 16 33 H 0.12 2.55 7.38 -52.49 -0.39 2.17 16 34 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 LS Contribution 327.67 15.07 4.94 4.94 Total: -1.00 -26.95 327.67 -8.94 -35.88 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -5.16 Total: 9.44 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -1.70 Total: -10.77 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: 0.34 Total: -31.70 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.08 Total: -14.88 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Atomic # 16 Polarization: -4.31 SS G_CDS: -2.41 Total: -6.71 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.95 -8.94 -35.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144053228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.541 kcal (2) G-P(sol) polarization free energy of solvation -26.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds