Wall clock time and date at job start Wed Apr 15 2020 11:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81395 * 103.00068 * 2 1 4 4 C 1.53002 * 109.47373 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.47700 * 179.97438 * 4 3 2 6 6 O 1.21300 * 119.99528 * 4.76616 * 5 4 3 7 7 N 1.34767 * 120.00254 * 184.76685 * 5 4 3 8 8 C 1.37101 * 120.00523 * 5.02165 * 7 5 4 9 9 H 1.08005 * 119.99575 * 38.30976 * 8 7 5 10 10 C 1.38943 * 120.00213 * 218.31489 * 8 7 5 11 11 N 1.31402 * 120.00322 * 20.05838 * 10 8 7 12 12 Si 1.86803 * 119.99819 * 200.05941 * 10 8 7 13 13 H 1.48505 * 109.47226 * 60.00105 * 12 10 8 14 14 H 1.48500 * 109.47030 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47211 * 299.99937 * 12 10 8 16 16 C 1.46505 * 120.00073 * 185.02076 * 7 5 4 17 17 C 1.50700 * 109.47061 * 270.00235 * 16 7 5 18 18 C 1.38238 * 120.00053 * 89.99955 * 17 16 7 19 19 C 1.38236 * 119.99811 * 179.97438 * 18 17 16 20 20 C 1.38238 * 120.00143 * 359.97134 * 19 18 17 21 21 C 1.38229 * 119.99883 * 0.28318 * 20 19 18 22 22 C 1.38233 * 120.00005 * 359.51048 * 21 20 19 23 23 H 1.09000 * 109.47157 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47206 * 299.99818 * 1 2 3 25 25 H 1.09001 * 109.46698 * 60.00157 * 1 2 3 26 26 H 1.09004 * 109.47149 * 60.00079 * 3 2 1 27 27 H 1.08999 * 109.47077 * 299.99669 * 3 2 1 28 28 H 1.09000 * 109.46922 * 59.99581 * 4 3 2 29 29 H 1.09001 * 109.47250 * 300.00675 * 4 3 2 30 30 H 0.96996 * 120.00407 * 174.97624 * 11 10 8 31 31 H 1.08997 * 109.47158 * 150.00400 * 16 7 5 32 32 H 1.08999 * 109.47101 * 29.99724 * 16 7 5 33 33 H 1.07998 * 120.00037 * 359.97371 * 18 17 16 34 34 H 1.08002 * 119.99689 * 180.02562 * 19 18 17 35 35 H 1.07998 * 119.99682 * 179.97438 * 20 19 18 36 36 H 1.08000 * 120.00060 * 179.72192 * 21 20 19 37 37 H 1.08006 * 120.00299 * 180.27604 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 6 4.0814 3.4082 0.0000 6 8 3.1978 4.2347 0.0864 7 7 5.3663 3.8031 -0.0966 8 6 6.3554 2.8752 -0.2976 9 1 6.1814 2.0337 -0.9518 10 6 7.5815 3.0175 0.3402 11 7 7.6823 3.7757 1.4087 12 14 9.0869 2.1309 -0.3212 13 1 9.3524 2.5768 -1.7126 14 1 10.2609 2.4446 0.5323 15 1 8.8438 0.6660 -0.3087 16 6 5.7063 5.2239 0.0133 17 6 5.6727 5.8556 -1.3545 18 6 4.4997 6.4107 -1.8309 19 6 4.4691 6.9906 -3.0854 20 6 5.6117 7.0161 -3.8632 21 6 6.7832 6.4564 -3.3889 22 6 6.8149 5.8802 -2.1328 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8031 2.2371 0.8900 27 1 1.8032 2.2370 -0.8900 28 1 4.1616 1.4702 -0.8891 29 1 4.1609 1.4703 0.8908 30 1 8.5197 3.8178 1.8964 31 1 6.7054 5.3268 0.4365 32 1 4.9843 5.7212 0.6609 33 1 3.6073 6.3912 -1.2231 34 1 3.5528 7.4247 -3.4574 35 1 5.5876 7.4688 -4.8434 36 1 7.6747 6.4722 -3.9984 37 1 7.7315 5.4468 -1.7603 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144053228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:49 Heat of formation + Delta-G solvation = -28.453559 kcal Electronic energy + Delta-G solvation = -19488.201760 eV Core-core repulsion = 16548.957877 eV Total energy + Delta-G solvation = -2939.243883 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.82419 -39.58765 -36.80451 -33.94155 -33.62932 -32.17893 -31.69354 -29.79872 -27.76685 -26.79954 -24.64553 -23.33843 -22.11714 -20.94936 -18.77982 -18.13736 -17.39673 -17.01236 -16.67406 -16.34700 -16.16144 -15.92631 -15.71919 -14.95164 -14.83380 -14.42245 -14.21056 -14.17649 -13.69420 -13.61686 -13.34772 -13.19148 -13.07197 -12.75917 -12.66615 -12.43288 -12.27496 -12.12565 -11.89155 -11.73862 -11.06559 -10.97426 -10.44142 -9.74728 -9.56436 -9.47210 -8.71067 -8.32441 -6.08588 0.49692 0.57499 0.69504 1.41719 1.47785 1.55570 1.65954 1.99971 2.30551 2.81144 3.05174 3.25324 3.95012 3.98312 4.04518 4.14169 4.23146 4.33707 4.35350 4.37048 4.38197 4.53056 4.69363 4.74546 4.82929 4.87411 4.90594 4.99239 5.15259 5.22230 5.28820 5.48885 5.64621 5.65710 5.89362 6.01244 6.21315 6.39197 7.10778 7.54152 7.98415 8.70792 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.012431 B = 0.006448 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.982331 B = 4341.578458 C = 5914.746837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.301 6.301 3 C -0.046 4.046 4 C -0.090 4.090 5 C 0.463 3.537 6 O -0.626 6.626 7 N -0.438 5.438 8 C -0.354 4.354 9 H 0.092 0.908 10 C 0.014 3.986 11 N -0.890 5.890 12 Si 0.973 3.027 13 H -0.265 1.265 14 H -0.282 1.282 15 H -0.264 1.264 16 C 0.152 3.848 17 C -0.100 4.100 18 C -0.121 4.121 19 C -0.129 4.129 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.114 4.114 23 H 0.120 0.880 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.275 0.725 31 H 0.096 0.904 32 H 0.040 0.960 33 H 0.106 0.894 34 H 0.142 0.858 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.077 -0.793 -7.208 8.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.076 6.076 3 C -0.194 4.194 4 C -0.131 4.131 5 C 0.252 3.748 6 O -0.514 6.514 7 N -0.155 5.155 8 C -0.482 4.482 9 H 0.110 0.890 10 C -0.190 4.190 11 N -0.526 5.526 12 Si 0.796 3.204 13 H -0.190 1.190 14 H -0.207 1.207 15 H -0.189 1.189 16 C 0.029 3.971 17 C -0.101 4.101 18 C -0.140 4.140 19 C -0.146 4.146 20 C -0.141 4.141 21 C -0.145 4.145 22 C -0.133 4.133 23 H 0.139 0.861 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.059 0.941 33 H 0.124 0.876 34 H 0.160 0.840 35 H 0.172 0.828 36 H 0.163 0.837 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.658 -1.161 -7.032 8.514 hybrid contribution 0.049 0.623 0.375 0.729 sum -4.609 -0.538 -6.656 8.114 Atomic orbital electron populations 1.23437 0.90740 1.07736 1.05764 1.86814 1.11151 1.11418 1.98192 1.22917 0.98332 0.93157 1.05038 1.20936 0.94052 0.93636 1.04496 1.20891 0.83086 0.91141 0.79680 1.90471 1.48011 1.55664 1.57289 1.43549 1.05093 1.05110 1.61711 1.19605 0.93031 1.07444 1.28096 0.89027 1.26097 1.01757 0.97265 0.93850 1.69917 1.28079 1.39356 1.15293 0.85297 0.77291 0.79135 0.78663 1.18968 1.20674 1.18880 1.20246 1.02329 0.82055 0.92491 1.20425 0.94369 0.97821 0.97528 1.21213 0.96977 0.98599 0.97194 1.21390 0.99684 0.99850 0.93710 1.21440 0.92208 0.99764 1.00648 1.21407 0.99537 0.98380 0.95137 1.21112 0.97572 0.99252 0.95361 0.86141 0.89805 0.89673 0.90512 0.90352 0.89202 0.89399 0.91562 0.88608 0.94100 0.87629 0.84039 0.82812 0.83739 0.87491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.18 10.76 113.37 1.22 -0.96 16 2 S -0.30 -8.96 22.38 -56.49 -1.26 -10.23 16 3 C -0.05 -1.61 5.24 71.98 0.38 -1.23 16 4 C -0.09 -3.71 4.60 29.85 0.14 -3.57 16 5 C 0.46 22.65 7.61 87.66 0.67 23.31 16 6 O -0.63 -32.38 14.81 -3.09 -0.05 -32.43 16 7 N -0.44 -22.15 2.50 -639.60 -1.60 -23.75 16 8 C -0.35 -17.72 8.57 84.04 0.72 -17.00 16 9 H 0.09 4.43 6.99 -2.91 -0.02 4.41 16 10 C 0.01 0.70 4.98 84.93 0.42 1.12 16 11 N -0.89 -46.33 11.43 21.66 0.25 -46.08 16 12 Si 0.97 38.68 29.60 68.60 2.03 40.72 16 13 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 14 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 15 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 16 C 0.15 7.53 5.09 85.63 0.44 7.97 16 17 C -0.10 -4.37 5.46 -19.86 -0.11 -4.48 16 18 C -0.12 -4.85 9.57 22.27 0.21 -4.64 16 19 C -0.13 -4.08 10.05 22.27 0.22 -3.85 16 20 C -0.12 -3.44 10.05 22.27 0.22 -3.22 16 21 C -0.13 -3.96 10.05 22.27 0.22 -3.73 16 22 C -0.11 -4.49 9.70 22.27 0.22 -4.27 16 23 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.08 2.78 8.05 -2.39 -0.02 2.76 16 27 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.09 3.59 7.32 -2.39 -0.02 3.57 16 29 H 0.09 3.70 8.14 -2.39 -0.02 3.68 16 30 H 0.27 13.50 8.32 -92.71 -0.77 12.73 16 31 H 0.10 5.02 5.47 -2.39 -0.01 5.01 16 32 H 0.04 2.12 7.44 -2.39 -0.02 2.10 16 33 H 0.11 4.55 7.38 -2.91 -0.02 4.53 16 34 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 35 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 36 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 37 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -60.14 327.67 5.39 -54.74 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 1.05 Total: 31.59 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: 4.97 Total: -14.56 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -1.35 Total: -69.83 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.05 Total: -32.43 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.72 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.26 Total: -10.23 kcal Total: -60.14 5.39 -54.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144053228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.291 kcal (2) G-P(sol) polarization free energy of solvation -60.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds