Wall clock time and date at job start Wed Apr 15 2020 11:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76195 * 103.00055 * 2 1 4 4 C 1.38789 * 120.09757 * 0.25589 * 3 2 1 5 5 C 1.38205 * 119.97413 * 180.23262 * 4 3 2 6 6 C 1.38267 * 120.16941 * 359.78930 * 5 4 3 7 7 C 1.38311 * 120.18636 * 359.97438 * 6 5 4 8 8 C 1.38484 * 120.02301 * 359.97438 * 7 6 5 9 9 O 1.36002 * 120.07878 * 180.02562 * 8 7 6 10 10 C 1.42903 * 117.00183 * 354.22383 * 9 8 7 11 11 H 1.09004 * 110.88363 * 327.50707 * 10 9 8 12 12 C 1.55163 * 111.00323 * 203.63019 * 10 9 8 13 13 C 1.54322 * 102.94081 * 206.38185 * 12 10 9 14 14 N 1.47020 * 107.27279 * 22.19430 * 13 12 10 15 15 C 1.36936 * 125.65024 * 181.02150 * 14 13 12 16 16 H 1.08003 * 119.99785 * 189.67337 * 15 14 13 17 17 C 1.38809 * 119.99921 * 9.68052 * 15 14 13 18 18 N 1.31616 * 119.99855 * 213.88824 * 17 15 14 19 19 Si 1.86799 * 120.00029 * 34.15879 * 17 15 14 20 20 H 1.48495 * 109.47195 * 275.13414 * 19 17 15 21 21 H 1.48501 * 109.47104 * 35.13479 * 19 17 15 22 22 H 1.48503 * 109.47089 * 155.13566 * 19 17 15 23 23 C 1.47430 * 108.70413 * 1.28392 * 14 13 12 24 24 H 1.09006 * 109.47465 * 59.99424 * 1 2 3 25 25 H 1.08996 * 109.47540 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46996 * 300.00020 * 1 2 3 27 27 H 1.07998 * 120.01270 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.91419 * 179.76375 * 5 4 3 29 29 H 1.07995 * 119.90835 * 180.02562 * 6 5 4 30 30 H 1.08001 * 119.98335 * 179.97438 * 7 6 5 31 31 H 1.09003 * 110.71657 * 88.01896 * 12 10 9 32 32 H 1.08999 * 110.72099 * 324.74474 * 12 10 9 33 33 H 1.08997 * 109.88070 * 262.77406 * 13 12 10 34 34 H 1.08998 * 110.00825 * 141.68274 * 13 12 10 35 35 H 0.97005 * 120.00104 * 5.38067 * 18 17 15 36 36 H 1.09001 * 110.36278 * 94.47972 * 23 14 13 37 37 H 1.08996 * 110.36802 * 216.81114 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1969 2.6651 0.0054 5 6 1.5107 4.0110 0.0005 6 6 2.8326 4.4163 -0.0053 7 6 3.8480 3.4772 -0.0058 8 6 3.5425 2.1264 0.0002 9 8 4.5400 1.2020 0.0003 10 6 5.8765 1.6896 -0.1340 11 1 5.9030 2.5845 -0.7558 12 6 6.8150 0.5913 -0.7000 13 6 8.1977 1.0018 -0.1513 14 7 7.9656 1.8466 1.0293 15 6 8.9380 2.4325 1.7951 16 1 8.6769 2.9053 2.7304 17 6 10.2590 2.4189 1.3691 18 7 11.2335 2.3348 2.2498 19 14 10.6539 2.5276 -0.4534 20 1 10.5920 1.1713 -1.0550 21 1 9.6656 3.4113 -1.1222 22 1 12.0182 3.0864 -0.6318 23 6 6.5128 1.9535 1.2559 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 0.1635 2.3513 0.0091 28 1 0.7213 4.7481 0.0008 29 1 3.0730 5.4692 -0.0087 30 1 4.8794 3.7974 -0.0107 31 1 6.8126 0.6061 -1.7899 32 1 6.5280 -0.3915 -0.3260 33 1 8.7447 1.5642 -0.9080 34 1 8.7644 0.1151 0.1330 35 1 11.0287 2.2038 3.1889 36 1 6.1848 1.2024 1.9746 37 1 6.2560 2.9530 1.6066 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225667800.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:56 Heat of formation + Delta-G solvation = 25.078650 kcal Electronic energy + Delta-G solvation = -19389.111333 eV Core-core repulsion = 16452.188782 eV Total energy + Delta-G solvation = -2936.922552 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.17886 -38.06033 -36.35766 -32.56586 -31.46692 -30.29469 -29.29273 -29.04265 -27.97282 -24.17592 -23.10076 -22.37696 -20.72224 -20.21727 -18.59141 -17.54716 -16.98941 -15.90033 -15.67033 -15.42588 -14.76015 -14.46590 -14.32406 -13.99688 -13.89913 -13.52143 -13.29146 -12.78675 -12.66500 -12.62231 -12.35011 -11.96947 -11.70775 -11.32333 -11.20341 -11.05305 -10.54147 -10.38877 -10.27288 -10.13917 -9.81972 -9.70772 -9.26363 -8.48361 -8.38063 -7.29330 -7.15020 -6.42892 -3.19517 1.09936 1.35335 1.44960 2.37911 3.24922 3.42766 3.52169 3.61451 3.69738 4.61666 4.69220 4.82348 4.83135 4.85476 4.89739 5.00468 5.11368 5.15970 5.25815 5.31082 5.38356 5.42703 5.49719 5.67448 5.76940 5.92170 6.06299 6.15754 6.22062 6.37076 6.41388 6.49190 6.53141 6.70160 6.74773 7.49698 7.67981 8.30647 8.96903 9.54437 10.20797 11.05417 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.028876 B = 0.004362 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.415146 B = 6417.857906 C = 6852.663875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 S -0.090 6.090 3 C -0.127 4.127 4 C -0.099 4.099 5 C -0.147 4.147 6 C -0.082 4.082 7 C -0.191 4.191 8 C 0.160 3.840 9 O -0.294 6.294 10 C 0.061 3.939 11 H 0.084 0.916 12 C -0.121 4.121 13 C 0.125 3.875 14 N -0.603 5.603 15 C -0.341 4.341 16 H 0.078 0.922 17 C -0.005 4.005 18 N -0.901 5.901 19 Si 1.040 2.960 20 H -0.290 1.290 21 H -0.293 1.293 22 H -0.296 1.296 23 C 0.120 3.880 24 H 0.080 0.920 25 H 0.106 0.894 26 H 0.081 0.919 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.139 0.861 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.029 0.971 34 H 0.046 0.954 35 H 0.267 0.733 36 H 0.038 0.962 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.154 -0.712 -7.022 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 S 0.151 5.849 3 C -0.240 4.240 4 C -0.123 4.123 5 C -0.166 4.166 6 C -0.102 4.102 7 C -0.212 4.212 8 C 0.108 3.892 9 O -0.206 6.206 10 C 0.004 3.996 11 H 0.102 0.898 12 C -0.159 4.159 13 C 0.000 4.000 14 N -0.332 5.332 15 C -0.468 4.468 16 H 0.096 0.904 17 C -0.208 4.208 18 N -0.539 5.539 19 Si 0.872 3.128 20 H -0.218 1.218 21 H -0.220 1.220 22 H -0.223 1.223 23 C -0.007 4.007 24 H 0.099 0.901 25 H 0.124 0.876 26 H 0.100 0.900 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.157 0.843 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.187 -1.841 -8.000 21.792 hybrid contribution -2.028 1.372 1.024 2.654 sum -22.214 -0.469 -6.975 23.288 Atomic orbital electron populations 1.23707 0.96490 1.06834 1.05247 1.85832 1.04038 1.02221 1.92807 1.20973 0.93345 0.97684 1.11961 1.20925 0.97444 0.92841 1.01136 1.20897 0.96549 0.95108 1.04096 1.21009 0.92269 0.99385 0.97544 1.21391 1.01129 0.91642 1.07006 1.18419 0.87045 0.88428 0.95289 1.86153 1.14709 1.33231 1.86556 1.24007 0.78166 0.98006 0.99411 0.89801 1.22673 0.94298 0.98671 1.00227 1.21584 0.93805 0.94849 0.89712 1.44687 1.00186 1.56517 1.31831 1.19947 0.87239 1.37831 1.01741 0.90383 1.25722 0.90639 0.98584 1.05860 1.70899 1.33170 1.46037 1.03839 0.84162 0.74759 0.76553 0.77336 1.21804 1.22028 1.22348 1.22070 0.85821 0.99430 0.93351 0.90071 0.87579 0.90017 0.85579 0.85817 0.85546 0.84337 0.90649 0.89937 0.95385 0.93557 0.92356 0.94416 0.93425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.15 101.05 0.92 -0.27 16 2 S -0.09 -1.14 22.05 -107.50 -2.37 -3.51 16 3 C -0.13 -1.75 6.12 -38.96 -0.24 -1.99 16 4 C -0.10 -1.12 9.36 -39.39 -0.37 -1.49 16 5 C -0.15 -1.56 10.04 -39.58 -0.40 -1.96 16 6 C -0.08 -0.96 10.04 -39.54 -0.40 -1.36 16 7 C -0.19 -2.72 8.94 -39.46 -0.35 -3.08 16 8 C 0.16 2.48 6.68 -39.07 -0.26 2.22 16 9 O -0.29 -5.04 9.32 -19.75 -0.18 -5.23 16 10 C 0.06 1.08 2.81 -24.46 -0.07 1.02 16 11 H 0.08 1.42 6.26 -51.93 -0.32 1.09 16 12 C -0.12 -2.13 6.68 -24.89 -0.17 -2.30 16 13 C 0.13 2.77 5.17 -3.07 -0.02 2.75 16 14 N -0.60 -15.03 3.28 -169.94 -0.56 -15.59 16 15 C -0.34 -9.81 10.34 -15.06 -0.16 -9.97 16 16 H 0.08 2.36 8.06 -52.48 -0.42 1.93 16 17 C -0.01 -0.16 5.36 -17.43 -0.09 -0.25 16 18 N -0.90 -27.94 13.70 55.49 0.76 -27.18 16 19 Si 1.04 26.18 25.04 -169.99 -4.26 21.92 16 20 H -0.29 -6.86 6.66 56.52 0.38 -6.48 16 21 H -0.29 -7.07 7.10 56.52 0.40 -6.67 16 22 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 23 C 0.12 2.51 6.86 -2.41 -0.02 2.50 16 24 H 0.08 0.55 7.76 -51.92 -0.40 0.15 16 25 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.57 7.74 -51.92 -0.40 0.17 16 27 H 0.13 1.09 5.88 -52.49 -0.31 0.78 16 28 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 29 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.14 2.01 5.65 -52.49 -0.30 1.72 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.03 0.64 3.92 -51.93 -0.20 0.44 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.27 8.17 8.73 -40.82 -0.36 7.82 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.98 7.80 -51.93 -0.40 0.58 16 LS Contribution 310.42 15.07 4.68 4.68 Total: -1.00 -31.98 310.42 -8.44 -40.42 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.90 Total: -1.32 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -1.61 Total: -14.18 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.20 Total: -42.77 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.18 Total: -5.23 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -4.26 Total: 21.92 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.37 Total: -3.51 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.98 -8.44 -40.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225667800.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.494 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds