Wall clock time and date at job start Wed Apr 15 2020 11:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76195 * 103.00055 * 2 1 4 4 C 1.38789 * 120.09757 * 0.25589 * 3 2 1 5 5 C 1.38205 * 119.97413 * 180.23262 * 4 3 2 6 6 C 1.38267 * 120.16941 * 359.78930 * 5 4 3 7 7 C 1.38311 * 120.18636 * 359.97438 * 6 5 4 8 8 C 1.38484 * 120.02301 * 359.97438 * 7 6 5 9 9 O 1.36002 * 120.07878 * 180.02562 * 8 7 6 10 10 C 1.42903 * 117.00183 * 354.22383 * 9 8 7 11 11 H 1.09004 * 110.88363 * 327.50707 * 10 9 8 12 12 C 1.55163 * 111.00323 * 203.63019 * 10 9 8 13 13 C 1.54322 * 102.94081 * 206.38185 * 12 10 9 14 14 N 1.47020 * 107.27279 * 22.19430 * 13 12 10 15 15 C 1.36936 * 125.65024 * 181.02150 * 14 13 12 16 16 H 1.08003 * 119.99785 * 189.67337 * 15 14 13 17 17 C 1.38809 * 119.99921 * 9.68052 * 15 14 13 18 18 N 1.31616 * 119.99855 * 213.88824 * 17 15 14 19 19 Si 1.86799 * 120.00029 * 34.15879 * 17 15 14 20 20 H 1.48495 * 109.47195 * 275.13414 * 19 17 15 21 21 H 1.48501 * 109.47104 * 35.13479 * 19 17 15 22 22 H 1.48503 * 109.47089 * 155.13566 * 19 17 15 23 23 C 1.47430 * 108.70413 * 1.28392 * 14 13 12 24 24 H 1.09006 * 109.47465 * 59.99424 * 1 2 3 25 25 H 1.08996 * 109.47540 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46996 * 300.00020 * 1 2 3 27 27 H 1.07998 * 120.01270 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.91419 * 179.76375 * 5 4 3 29 29 H 1.07995 * 119.90835 * 180.02562 * 6 5 4 30 30 H 1.08001 * 119.98335 * 179.97438 * 7 6 5 31 31 H 1.09003 * 110.71657 * 88.01896 * 12 10 9 32 32 H 1.08999 * 110.72099 * 324.74474 * 12 10 9 33 33 H 1.08997 * 109.88070 * 262.77406 * 13 12 10 34 34 H 1.08998 * 110.00825 * 141.68274 * 13 12 10 35 35 H 0.97005 * 120.00104 * 5.38067 * 18 17 15 36 36 H 1.09001 * 110.36278 * 94.47972 * 23 14 13 37 37 H 1.08996 * 110.36802 * 216.81114 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1969 2.6651 0.0054 5 6 1.5107 4.0110 0.0005 6 6 2.8326 4.4163 -0.0053 7 6 3.8480 3.4772 -0.0058 8 6 3.5425 2.1264 0.0002 9 8 4.5400 1.2020 0.0003 10 6 5.8765 1.6896 -0.1340 11 1 5.9030 2.5845 -0.7558 12 6 6.8150 0.5913 -0.7000 13 6 8.1977 1.0018 -0.1513 14 7 7.9656 1.8466 1.0293 15 6 8.9380 2.4325 1.7951 16 1 8.6769 2.9053 2.7304 17 6 10.2590 2.4189 1.3691 18 7 11.2335 2.3348 2.2498 19 14 10.6539 2.5276 -0.4534 20 1 10.5920 1.1713 -1.0550 21 1 9.6656 3.4113 -1.1222 22 1 12.0182 3.0864 -0.6318 23 6 6.5128 1.9535 1.2559 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 0.1635 2.3513 0.0091 28 1 0.7213 4.7481 0.0008 29 1 3.0730 5.4692 -0.0087 30 1 4.8794 3.7974 -0.0107 31 1 6.8126 0.6061 -1.7899 32 1 6.5280 -0.3915 -0.3260 33 1 8.7447 1.5642 -0.9080 34 1 8.7644 0.1151 0.1330 35 1 11.0287 2.2038 3.1889 36 1 6.1848 1.2024 1.9746 37 1 6.2560 2.9530 1.6066 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225667800.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:53 Heat of formation + Delta-G solvation = 5.324894 kcal Electronic energy + Delta-G solvation = -19389.967920 eV Core-core repulsion = 16452.188782 eV Total energy + Delta-G solvation = -2937.779139 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -41.34878 -39.38532 -37.78684 -34.64833 -32.40071 -31.77691 -30.68354 -29.83445 -29.44199 -26.04377 -24.15911 -23.51118 -22.50506 -21.68822 -19.72127 -19.57748 -18.07768 -17.34583 -16.96438 -16.49487 -16.21289 -15.68387 -15.64617 -15.33768 -15.07407 -14.85643 -14.53316 -14.21001 -14.10499 -13.70857 -13.34932 -13.16070 -13.09504 -13.03354 -12.80279 -12.45351 -12.14080 -11.86115 -11.73087 -11.60430 -11.25576 -11.06043 -10.74360 -10.54550 -9.50416 -9.23898 -8.75966 -8.25440 -5.44768 0.16270 0.37826 0.60108 1.41126 1.51398 1.58635 1.71849 2.02428 2.52659 2.66488 2.88987 3.38087 3.47641 3.69863 3.76264 3.88284 4.00585 4.14165 4.25144 4.27920 4.30258 4.33776 4.38932 4.57243 4.63125 4.75897 4.80464 4.82608 4.87782 4.90248 5.09009 5.15512 5.31155 5.49108 5.51945 5.76895 6.04061 6.32602 6.73972 7.39746 8.05871 8.73973 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.028876 B = 0.004362 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.415146 B = 6417.857906 C = 6852.663875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.150 6.150 3 C -0.134 4.134 4 C -0.098 4.098 5 C -0.136 4.136 6 C -0.086 4.086 7 C -0.206 4.206 8 C 0.123 3.877 9 O -0.303 6.303 10 C 0.079 3.921 11 H 0.095 0.905 12 C -0.110 4.110 13 C 0.117 3.883 14 N -0.623 5.623 15 C -0.340 4.340 16 H 0.045 0.955 17 C -0.057 4.057 18 N -0.935 5.935 19 Si 1.086 2.914 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.300 1.300 23 C 0.119 3.881 24 H 0.096 0.904 25 H 0.123 0.877 26 H 0.093 0.907 27 H 0.157 0.843 28 H 0.160 0.840 29 H 0.149 0.851 30 H 0.127 0.873 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.253 0.747 36 H 0.025 0.975 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.343 -0.373 -9.378 27.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.091 5.909 3 C -0.247 4.247 4 C -0.122 4.122 5 C -0.156 4.156 6 C -0.107 4.107 7 C -0.227 4.227 8 C 0.073 3.927 9 O -0.216 6.216 10 C 0.022 3.978 11 H 0.113 0.887 12 C -0.147 4.147 13 C -0.007 4.007 14 N -0.352 5.352 15 C -0.468 4.468 16 H 0.062 0.938 17 C -0.254 4.254 18 N -0.575 5.575 19 Si 0.912 3.088 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.228 1.228 23 C -0.007 4.007 24 H 0.115 0.885 25 H 0.141 0.859 26 H 0.112 0.888 27 H 0.174 0.826 28 H 0.178 0.822 29 H 0.167 0.833 30 H 0.145 0.855 31 H 0.128 0.872 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -23.431 -1.513 -10.363 25.665 hybrid contribution -1.254 1.297 1.889 2.613 sum -24.685 -0.216 -8.474 26.100 Atomic orbital electron populations 1.23793 0.91719 1.08436 1.06581 1.85980 1.09398 1.02652 1.92905 1.21184 0.93191 0.98381 1.11901 1.21364 0.98325 0.92734 0.99742 1.21356 0.96895 0.95664 1.01649 1.21344 0.92406 1.00114 0.96812 1.21441 1.01386 0.91819 1.08020 1.18744 0.87407 0.88721 0.97863 1.86127 1.14322 1.33829 1.87352 1.23627 0.78938 0.98535 0.96686 0.88742 1.22635 0.91303 0.98670 1.02126 1.21745 0.96592 0.93767 0.88639 1.44702 1.01149 1.56833 1.32488 1.19814 0.88591 1.37227 1.01139 0.93750 1.26961 0.90698 0.98418 1.09320 1.71008 1.33971 1.49128 1.03434 0.83552 0.74626 0.78144 0.72448 1.19000 1.20048 1.22840 1.22080 0.84169 0.98774 0.95681 0.88481 0.85877 0.88778 0.82573 0.82230 0.83321 0.85491 0.87155 0.89315 0.95049 0.94784 0.93837 0.95696 0.93856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.15 113.37 1.04 -0.64 16 2 S -0.15 -3.60 22.05 -56.49 -1.25 -4.85 16 3 C -0.13 -3.47 6.12 22.68 0.14 -3.33 16 4 C -0.10 -1.88 9.36 22.39 0.21 -1.67 16 5 C -0.14 -2.38 10.04 22.27 0.22 -2.15 16 6 C -0.09 -1.82 10.04 22.29 0.22 -1.60 16 7 C -0.21 -5.69 8.94 22.35 0.20 -5.49 16 8 C 0.12 3.73 6.68 22.60 0.15 3.88 16 9 O -0.30 -10.28 9.32 -93.57 -0.87 -11.15 16 10 C 0.08 2.76 2.81 32.07 0.09 2.85 16 11 H 0.09 3.09 6.26 -2.39 -0.01 3.07 16 12 C -0.11 -3.67 6.68 31.78 0.21 -3.45 16 13 C 0.12 5.04 5.17 86.73 0.45 5.49 16 14 N -0.62 -31.50 3.28 -691.55 -2.27 -33.76 16 15 C -0.34 -20.25 10.34 84.03 0.87 -19.38 16 16 H 0.04 2.85 8.06 -2.91 -0.02 2.83 16 17 C -0.06 -3.43 5.36 84.86 0.45 -2.98 16 18 N -0.93 -59.96 13.70 21.65 0.30 -59.67 16 19 Si 1.09 52.80 25.04 68.60 1.72 54.52 16 20 H -0.26 -11.64 6.66 99.48 0.66 -10.98 16 21 H -0.27 -12.42 7.10 99.48 0.71 -11.71 16 22 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 23 C 0.12 5.10 6.86 86.93 0.60 5.69 16 24 H 0.10 0.91 7.76 -2.39 -0.02 0.89 16 25 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.09 0.95 7.74 -2.39 -0.02 0.93 16 27 H 0.16 1.96 5.88 -2.91 -0.02 1.95 16 28 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 30 H 0.13 3.69 5.65 -2.91 -0.02 3.67 16 31 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 33 H 0.03 1.36 3.92 -2.39 -0.01 1.35 16 34 H 0.03 1.54 8.14 -2.39 -0.02 1.53 16 35 H 0.25 16.33 8.73 -92.70 -0.81 15.52 16 36 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.04 1.86 7.80 -2.39 -0.02 1.84 16 Total: -1.00 -72.35 310.42 3.47 -68.88 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.98 Total: 8.80 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 4.85 Total: -22.77 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -1.97 Total: -93.43 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -0.87 Total: -11.15 kcal Atomic # 14 Polarization: 52.80 SS G_CDS: 1.72 Total: 54.52 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.25 Total: -4.85 kcal Total: -72.35 3.47 -68.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225667800.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.209 kcal (2) G-P(sol) polarization free energy of solvation -72.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds