Wall clock time and date at job start Wed Apr 15 2020 11:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76200 * 102.99798 * 2 1 4 4 C 1.39037 * 120.05286 * 0.02562 * 3 2 1 5 5 C 1.38089 * 120.03140 * 180.02562 * 4 3 2 6 6 C 1.38234 * 120.13442 * 0.25277 * 5 4 3 7 7 C 1.38797 * 120.10152 * 359.44559 * 6 5 4 8 8 O 1.35898 * 120.01568 * 180.25931 * 7 6 5 9 9 C 1.42894 * 116.99861 * 185.98387 * 8 7 6 10 10 H 1.08994 * 110.88924 * 32.40932 * 9 8 7 11 11 C 1.55157 * 111.00284 * 156.29245 * 9 8 7 12 12 C 1.54324 * 102.94526 * 153.57445 * 11 9 8 13 13 N 1.47026 * 107.26747 * 337.80831 * 12 11 9 14 14 C 1.36935 * 125.64566 * 178.89303 * 13 12 11 15 15 H 1.07999 * 119.99935 * 180.02562 * 14 13 12 16 16 C 1.38812 * 120.00006 * 0.02562 * 14 13 12 17 17 N 1.31620 * 120.00456 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 120.00058 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47174 * 89.99556 * 18 16 14 20 20 H 1.48493 * 109.47218 * 210.00153 * 18 16 14 21 21 H 1.48505 * 109.46783 * 329.99598 * 18 16 14 22 22 C 1.47419 * 108.70237 * 358.93767 * 13 12 11 23 23 C 1.38594 * 119.96863 * 0.57714 * 7 6 5 24 24 H 1.08994 * 109.47051 * 60.00361 * 1 2 3 25 25 H 1.09002 * 109.46526 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47052 * 299.99345 * 1 2 3 27 27 H 1.07996 * 119.98442 * 359.97062 * 4 3 2 28 28 H 1.07993 * 119.93492 * 179.97438 * 5 4 3 29 29 H 1.07997 * 119.95025 * 179.72525 * 6 5 4 30 30 H 1.09001 * 110.72277 * 271.93729 * 11 9 8 31 31 H 1.09002 * 110.72179 * 35.20706 * 11 9 8 32 32 H 1.09002 * 109.88163 * 97.21688 * 12 11 9 33 33 H 1.08999 * 109.88673 * 218.23291 * 12 11 9 34 34 H 0.96992 * 120.00388 * 180.02562 * 17 16 14 35 35 H 1.09005 * 110.36776 * 265.28718 * 22 13 12 36 36 H 1.09004 * 110.36603 * 142.96988 * 22 13 12 37 37 H 1.07997 * 120.06912 * 179.68040 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1943 2.6660 0.0005 5 6 1.5054 4.0114 0.0000 6 6 2.8265 4.4182 -0.0063 7 6 3.8452 3.4755 -0.0006 8 8 5.1434 3.8774 -0.0015 9 6 6.1377 2.8590 -0.1281 10 1 5.7749 2.0360 -0.7438 11 6 7.4589 3.4394 -0.6981 12 6 8.5283 2.4762 -0.1411 13 7 7.9533 1.8240 1.0444 14 6 8.5761 0.8805 1.8171 15 1 8.0663 0.4597 2.6712 16 6 9.8626 0.4648 1.5026 17 7 10.4838 0.9772 0.4614 18 14 10.7125 -0.8218 2.5571 19 1 10.4122 -2.1751 2.0248 20 1 12.1796 -0.5936 2.5300 21 1 10.2214 -0.7194 3.9548 22 6 6.5948 2.3533 1.2629 23 6 3.5379 2.1241 -0.0005 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 0.1614 2.3509 0.0005 28 1 0.7150 4.7473 0.0000 29 1 3.0664 5.4712 -0.0112 30 1 7.4510 3.4184 -1.7878 31 1 7.6245 4.4528 -0.3321 32 1 8.7789 1.7265 -0.8917 33 1 9.4219 3.0351 0.1371 34 1 11.3826 0.6865 0.2415 35 1 6.6187 3.1766 1.9769 36 1 5.9321 1.5631 1.6159 37 1 4.3293 1.3892 -0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226238406.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:10 Heat of formation + Delta-G solvation = 17.723458 kcal Electronic energy + Delta-G solvation = -19195.440529 eV Core-core repulsion = 16258.199032 eV Total energy + Delta-G solvation = -2937.241497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.06649 -37.85854 -36.09905 -32.36347 -31.11406 -30.45453 -29.32719 -28.65797 -27.33785 -24.58658 -23.04480 -22.36697 -20.27832 -20.06408 -18.58302 -17.06322 -16.49198 -16.15449 -15.42989 -14.98874 -14.67679 -14.50121 -14.11196 -13.91997 -13.82400 -13.64381 -12.91626 -12.69360 -12.50372 -12.38324 -11.98305 -11.74263 -11.68382 -11.17277 -10.96412 -10.80770 -10.34807 -10.32127 -10.25000 -10.08073 -9.89009 -9.73089 -9.61170 -8.63226 -8.23116 -7.48436 -6.88980 -5.74202 -3.08829 1.18124 1.39388 1.40848 2.28775 3.39126 3.41136 3.45911 3.48232 3.68756 4.48983 4.81236 4.81668 4.82124 4.96741 5.09443 5.22877 5.29075 5.37812 5.41787 5.51026 5.55252 5.62341 5.71191 5.74779 6.15106 6.17400 6.30622 6.33406 6.37067 6.42242 6.57018 6.63480 6.79592 7.51156 7.54243 7.66113 7.79176 8.20780 9.17917 9.77497 10.41849 11.37654 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.020332 B = 0.004391 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.828432 B = 6375.005279 C = 7431.917507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.112 6.112 3 C -0.045 4.045 4 C -0.181 4.181 5 C -0.064 4.064 6 C -0.163 4.163 7 C 0.161 3.839 8 O -0.302 6.302 9 C 0.063 3.937 10 H 0.082 0.918 11 C -0.136 4.136 12 C 0.178 3.822 13 N -0.602 5.602 14 C -0.230 4.230 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.121 3.879 23 C -0.189 4.189 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.083 0.917 27 H 0.121 0.879 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.253 0.747 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.568 3.658 -3.218 20.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.130 5.870 3 C -0.158 4.158 4 C -0.205 4.205 5 C -0.084 4.084 6 C -0.184 4.184 7 C 0.113 3.887 8 O -0.214 6.214 9 C 0.006 3.994 10 H 0.100 0.900 11 C -0.174 4.174 12 C 0.054 3.946 13 N -0.330 5.330 14 C -0.358 4.358 15 H 0.097 0.903 16 C -0.203 4.203 17 N -0.570 5.570 18 Si 0.744 3.256 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.206 1.206 22 C -0.006 4.006 23 C -0.213 4.213 24 H 0.102 0.898 25 H 0.125 0.875 26 H 0.102 0.898 27 H 0.139 0.861 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.618 2.665 -3.195 19.077 hybrid contribution -0.330 0.207 0.516 0.646 sum -18.947 2.873 -2.679 19.350 Atomic orbital electron populations 1.23669 0.95284 1.06924 1.05574 1.85761 1.05735 1.03192 1.92292 1.21467 0.95924 0.96373 1.01987 1.20963 0.97843 0.93156 1.08563 1.20768 0.95478 0.95151 0.97032 1.20468 0.90914 0.99222 1.07793 1.18952 0.84737 0.91855 0.93201 1.86121 1.11949 1.36696 1.86651 1.23927 0.86737 0.89446 0.99308 0.90045 1.23045 0.93387 1.01032 0.99946 1.21204 0.91952 0.92610 0.88861 1.44332 1.10962 1.46533 1.31152 1.19068 0.96745 1.13409 1.06601 0.90280 1.24810 0.96985 1.00158 0.98299 1.69939 1.13508 1.45536 1.28000 0.86086 0.78771 0.81130 0.79597 1.21503 1.21597 1.20617 1.21914 0.88588 0.96783 0.93333 1.20982 0.95735 0.95561 1.09068 0.89805 0.87519 0.89765 0.86081 0.85337 0.85069 0.91348 0.91081 0.93052 0.93186 0.93631 0.95171 0.93894 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.15 101.05 0.92 -0.20 16 2 S -0.11 -1.38 22.56 -107.50 -2.43 -3.81 16 3 C -0.04 -0.61 6.11 -39.06 -0.24 -0.85 16 4 C -0.18 -2.09 9.36 -39.34 -0.37 -2.46 16 5 C -0.06 -0.71 10.03 -39.64 -0.40 -1.11 16 6 C -0.16 -2.13 9.98 -39.38 -0.39 -2.52 16 7 C 0.16 2.53 6.68 -39.24 -0.26 2.27 16 8 O -0.30 -5.28 9.95 -19.42 -0.19 -5.48 16 9 C 0.06 1.18 2.81 -24.58 -0.07 1.11 16 10 H 0.08 1.51 6.24 -51.93 -0.32 1.18 16 11 C -0.14 -2.62 6.69 -24.90 -0.17 -2.79 16 12 C 0.18 4.35 5.37 -3.06 -0.02 4.33 16 13 N -0.60 -15.66 3.39 -170.07 -0.58 -16.24 16 14 C -0.23 -6.49 10.28 -15.06 -0.15 -6.65 16 15 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 16 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 17 N -0.92 -27.04 10.31 55.49 0.57 -26.47 16 18 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.12 2.63 6.85 -2.53 -0.02 2.61 16 23 C -0.19 -2.97 8.68 -39.22 -0.34 -3.31 16 24 H 0.08 0.57 7.75 -51.93 -0.40 0.16 16 25 H 0.11 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.08 0.58 7.75 -51.93 -0.40 0.18 16 27 H 0.12 1.09 5.87 -52.49 -0.31 0.78 16 28 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 29 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.05 1.36 7.38 -51.93 -0.38 0.98 16 33 H 0.05 1.34 7.51 -51.93 -0.39 0.95 16 34 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.04 0.92 7.79 -51.93 -0.40 0.51 16 37 H 0.14 2.34 5.64 -52.49 -0.30 2.05 16 LS Contribution 315.31 15.07 4.75 4.75 Total: -1.00 -30.72 315.31 -9.48 -40.21 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.99 Total: -0.29 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -1.60 Total: -9.84 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -0.01 Total: -42.71 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.19 Total: -5.48 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: -1.38 SS G_CDS: -2.43 Total: -3.81 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.72 -9.48 -40.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226238406.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.930 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds