Wall clock time and date at job start Wed Apr 15 2020 11:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76200 * 102.99798 * 2 1 4 4 C 1.39037 * 120.05286 * 0.02562 * 3 2 1 5 5 C 1.38089 * 120.03140 * 180.02562 * 4 3 2 6 6 C 1.38234 * 120.13442 * 0.25277 * 5 4 3 7 7 C 1.38797 * 120.10152 * 359.44559 * 6 5 4 8 8 O 1.35898 * 120.01568 * 180.25931 * 7 6 5 9 9 C 1.42894 * 116.99861 * 185.98387 * 8 7 6 10 10 H 1.08994 * 110.88924 * 32.40932 * 9 8 7 11 11 C 1.55157 * 111.00284 * 156.29245 * 9 8 7 12 12 C 1.54324 * 102.94526 * 153.57445 * 11 9 8 13 13 N 1.47026 * 107.26747 * 337.80831 * 12 11 9 14 14 C 1.36935 * 125.64566 * 178.89303 * 13 12 11 15 15 H 1.07999 * 119.99935 * 180.02562 * 14 13 12 16 16 C 1.38812 * 120.00006 * 0.02562 * 14 13 12 17 17 N 1.31620 * 120.00456 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 120.00058 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47174 * 89.99556 * 18 16 14 20 20 H 1.48493 * 109.47218 * 210.00153 * 18 16 14 21 21 H 1.48505 * 109.46783 * 329.99598 * 18 16 14 22 22 C 1.47419 * 108.70237 * 358.93767 * 13 12 11 23 23 C 1.38594 * 119.96863 * 0.57714 * 7 6 5 24 24 H 1.08994 * 109.47051 * 60.00361 * 1 2 3 25 25 H 1.09002 * 109.46526 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47052 * 299.99345 * 1 2 3 27 27 H 1.07996 * 119.98442 * 359.97062 * 4 3 2 28 28 H 1.07993 * 119.93492 * 179.97438 * 5 4 3 29 29 H 1.07997 * 119.95025 * 179.72525 * 6 5 4 30 30 H 1.09001 * 110.72277 * 271.93729 * 11 9 8 31 31 H 1.09002 * 110.72179 * 35.20706 * 11 9 8 32 32 H 1.09002 * 109.88163 * 97.21688 * 12 11 9 33 33 H 1.08999 * 109.88673 * 218.23291 * 12 11 9 34 34 H 0.96992 * 120.00388 * 180.02562 * 17 16 14 35 35 H 1.09005 * 110.36776 * 265.28718 * 22 13 12 36 36 H 1.09004 * 110.36603 * 142.96988 * 22 13 12 37 37 H 1.07997 * 120.06912 * 179.68040 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1943 2.6660 0.0005 5 6 1.5054 4.0114 0.0000 6 6 2.8265 4.4182 -0.0063 7 6 3.8452 3.4755 -0.0006 8 8 5.1434 3.8774 -0.0015 9 6 6.1377 2.8590 -0.1281 10 1 5.7749 2.0360 -0.7438 11 6 7.4589 3.4394 -0.6981 12 6 8.5283 2.4762 -0.1411 13 7 7.9533 1.8240 1.0444 14 6 8.5761 0.8805 1.8171 15 1 8.0663 0.4597 2.6712 16 6 9.8626 0.4648 1.5026 17 7 10.4838 0.9772 0.4614 18 14 10.7125 -0.8218 2.5571 19 1 10.4122 -2.1751 2.0248 20 1 12.1796 -0.5936 2.5300 21 1 10.2214 -0.7194 3.9548 22 6 6.5948 2.3533 1.2629 23 6 3.5379 2.1241 -0.0005 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 0.1614 2.3509 0.0005 28 1 0.7150 4.7473 0.0000 29 1 3.0664 5.4712 -0.0112 30 1 7.4510 3.4184 -1.7878 31 1 7.6245 4.4528 -0.3321 32 1 8.7789 1.7265 -0.8917 33 1 9.4219 3.0351 0.1371 34 1 11.3826 0.6865 0.2415 35 1 6.6187 3.1766 1.9769 36 1 5.9321 1.5631 1.6159 37 1 4.3293 1.3892 -0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226238406.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:09 Heat of formation + Delta-G solvation = 0.456075 kcal Electronic energy + Delta-G solvation = -19196.189299 eV Core-core repulsion = 16258.199032 eV Total energy + Delta-G solvation = -2937.990267 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.30823 -39.23585 -37.66193 -34.35049 -32.15475 -31.61636 -30.96176 -29.58946 -28.99834 -26.56281 -24.15750 -23.54189 -22.13279 -21.59749 -19.76464 -19.04015 -17.64087 -17.22990 -16.73447 -16.68801 -16.31760 -15.71583 -15.49381 -15.24110 -14.70670 -14.63101 -14.40552 -14.09116 -13.98895 -13.62940 -13.44693 -13.17894 -12.93766 -12.75025 -12.66819 -12.29957 -12.16261 -12.05806 -11.93136 -11.64462 -11.56133 -11.13068 -10.75943 -10.62160 -9.37915 -8.99909 -8.44660 -7.90230 -5.28084 0.17434 0.38393 0.52953 1.44936 1.47276 1.49177 1.56011 2.07514 2.48119 2.67338 3.28722 3.57640 3.63294 3.82059 3.89318 3.97190 4.07219 4.16078 4.28139 4.28711 4.37189 4.50285 4.55826 4.67977 4.72096 4.78981 4.84997 4.91352 4.95636 5.18898 5.31751 5.37990 5.40253 5.54791 5.66519 5.75355 6.11377 6.39813 7.03349 7.67425 8.31412 9.20224 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.020332 B = 0.004391 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.828432 B = 6375.005279 C = 7431.917507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.169 6.169 3 C -0.053 4.053 4 C -0.173 4.173 5 C -0.053 4.053 6 C -0.164 4.164 7 C 0.130 3.870 8 O -0.307 6.307 9 C 0.084 3.916 10 H 0.082 0.918 11 C -0.122 4.122 12 C 0.186 3.814 13 N -0.623 5.623 14 C -0.251 4.251 15 H 0.081 0.919 16 C -0.060 4.060 17 N -0.949 5.949 18 Si 0.982 3.018 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.270 1.270 22 C 0.121 3.879 23 C -0.211 4.211 24 H 0.099 0.901 25 H 0.124 0.876 26 H 0.097 0.903 27 H 0.154 0.846 28 H 0.171 0.829 29 H 0.148 0.852 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.022 0.978 33 H 0.019 0.981 34 H 0.250 0.750 35 H 0.027 0.973 36 H 0.041 0.959 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.705 4.297 -3.118 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.073 5.927 3 C -0.166 4.166 4 C -0.196 4.196 5 C -0.073 4.073 6 C -0.185 4.185 7 C 0.083 3.917 8 O -0.220 6.220 9 C 0.027 3.973 10 H 0.100 0.900 11 C -0.160 4.160 12 C 0.061 3.939 13 N -0.351 5.351 14 C -0.379 4.379 15 H 0.099 0.901 16 C -0.253 4.253 17 N -0.597 5.597 18 Si 0.809 3.191 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.195 1.195 22 C -0.005 4.005 23 C -0.235 4.235 24 H 0.118 0.882 25 H 0.142 0.858 26 H 0.116 0.884 27 H 0.171 0.829 28 H 0.189 0.811 29 H 0.166 0.834 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.059 0.941 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.796 3.313 -3.090 22.262 hybrid contribution 0.449 0.007 0.501 0.673 sum -21.347 3.320 -2.589 21.758 Atomic orbital electron populations 1.23784 0.90466 1.08593 1.06949 1.85966 1.11085 1.03358 1.92278 1.21611 0.95684 0.97224 1.02065 1.21422 0.98801 0.93016 1.06392 1.21267 0.95521 0.95829 0.94669 1.20807 0.91130 0.99582 1.07003 1.19276 0.84267 0.92618 0.95520 1.86074 1.12749 1.35707 1.87478 1.23463 0.87164 0.89765 0.96939 0.90039 1.22871 0.91812 0.99992 1.01313 1.20954 0.92717 0.92336 0.87860 1.44609 1.12646 1.46469 1.31364 1.19435 0.97354 1.14047 1.07106 0.90141 1.25675 0.97620 1.02318 0.99687 1.70149 1.13476 1.46695 1.29400 0.85035 0.77245 0.78408 0.78366 1.21026 1.21633 1.19457 1.21969 0.86795 0.96423 0.95327 1.20891 0.96360 0.95249 1.11018 0.88237 0.85757 0.88398 0.82866 0.81116 0.83428 0.88751 0.89975 0.95934 0.96298 0.94054 0.95525 0.94109 0.86745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 9.15 113.37 1.04 -0.54 16 2 S -0.17 -4.04 22.56 -56.49 -1.27 -5.31 16 3 C -0.05 -1.39 6.11 22.61 0.14 -1.26 16 4 C -0.17 -3.37 9.36 22.43 0.21 -3.16 16 5 C -0.05 -0.96 10.03 22.23 0.22 -0.73 16 6 C -0.16 -3.87 9.98 22.40 0.22 -3.65 16 7 C 0.13 4.01 6.68 22.49 0.15 4.16 16 8 O -0.31 -10.68 9.95 -92.40 -0.92 -11.60 16 9 C 0.08 3.22 2.81 31.98 0.09 3.31 16 10 H 0.08 3.13 6.24 -2.39 -0.01 3.11 16 11 C -0.12 -4.74 6.69 31.78 0.21 -4.52 16 12 C 0.19 9.47 5.37 86.73 0.47 9.94 16 13 N -0.62 -33.68 3.39 -691.99 -2.35 -36.03 16 14 C -0.25 -14.59 10.28 84.03 0.86 -13.73 16 15 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 16 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 17 N -0.95 -57.57 10.31 21.65 0.22 -57.35 16 18 Si 0.98 46.45 29.55 68.60 2.03 48.48 16 19 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 C 0.12 5.44 6.85 86.85 0.60 6.04 16 23 C -0.21 -6.68 8.68 22.50 0.20 -6.48 16 24 H 0.10 0.93 7.75 -2.39 -0.02 0.92 16 25 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.10 0.96 7.75 -2.39 -0.02 0.94 16 27 H 0.15 1.97 5.87 -2.91 -0.02 1.95 16 28 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 29 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 30 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 31 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 32 H 0.02 1.25 7.38 -2.39 -0.02 1.24 16 33 H 0.02 1.06 7.51 -2.39 -0.02 1.04 16 34 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 35 H 0.03 1.22 8.14 -2.38 -0.02 1.21 16 36 H 0.04 1.83 7.79 -2.38 -0.02 1.81 16 37 H 0.11 4.10 5.64 -2.91 -0.02 4.08 16 Total: -1.00 -69.46 315.31 3.64 -65.81 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 1.06 Total: 9.62 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 4.87 Total: -13.62 kcal Atomic # 7 Polarization: -91.25 SS G_CDS: -2.13 Total: -93.37 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.92 Total: -11.60 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Atomic # 16 Polarization: -4.04 SS G_CDS: -1.27 Total: -5.31 kcal Total: -69.46 3.64 -65.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226238406.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.271 kcal (2) G-P(sol) polarization free energy of solvation -69.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds