Wall clock time and date at job start Wed Apr 15 2020 11:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.76205 * 103.00033 * 2 1 4 4 C 1.39042 * 120.04624 * 0.02645 * 3 2 1 5 5 C 1.38094 * 120.02386 * 179.97438 * 4 3 2 6 6 C 1.38231 * 120.13496 * 359.78525 * 5 4 3 7 7 C 1.38782 * 120.10748 * 0.46484 * 6 5 4 8 8 O 1.35894 * 120.01992 * 179.79065 * 7 6 5 9 9 C 1.42902 * 117.00327 * 185.45863 * 8 7 6 10 10 C 1.53515 * 114.17202 * 156.75703 * 9 8 7 11 11 N 1.47481 * 87.92931 * 87.62273 * 10 9 8 12 12 C 1.46907 * 110.99933 * 138.70817 * 11 10 9 13 13 C 1.50696 * 109.47098 * 170.00144 * 12 11 10 14 14 H 1.08003 * 120.00144 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99662 * 180.27621 * 13 12 11 16 16 N 1.31513 * 120.00160 * 359.71438 * 15 13 12 17 17 Si 1.86804 * 120.00020 * 179.72033 * 15 13 12 18 18 H 1.48501 * 109.47359 * 89.99335 * 17 15 13 19 19 H 1.48494 * 109.47197 * 209.99471 * 17 15 13 20 20 H 1.48498 * 109.47063 * 329.99760 * 17 15 13 21 21 C 1.47476 * 87.84036 * 27.00959 * 11 10 9 22 22 C 1.38602 * 119.96637 * 359.51618 * 7 6 5 23 23 H 1.08992 * 109.47720 * 59.99799 * 1 2 3 24 24 H 1.09007 * 109.46996 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47516 * 299.99393 * 1 2 3 26 26 H 1.07992 * 119.98638 * 359.97400 * 4 3 2 27 27 H 1.08003 * 119.92980 * 180.02562 * 5 4 3 28 28 H 1.08004 * 119.94726 * 180.23895 * 6 5 4 29 29 H 1.09003 * 113.25536 * 23.80186 * 9 8 7 30 30 H 1.08994 * 113.47417 * 332.85679 * 10 9 8 31 31 H 1.08999 * 113.47759 * 202.38543 * 10 9 8 32 32 H 1.08990 * 109.47152 * 49.99146 * 12 11 10 33 33 H 1.09005 * 109.46410 * 289.99462 * 12 11 10 34 34 H 0.97005 * 119.99595 * 180.02562 * 16 15 13 35 35 H 1.09003 * 113.47621 * 87.75500 * 21 11 10 36 36 H 1.08996 * 113.47917 * 218.22213 * 21 11 10 37 37 H 1.08001 * 120.06510 * 180.23231 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1942 2.6660 0.0006 5 6 1.5054 4.0114 0.0011 6 6 2.8265 4.4181 0.0056 7 6 3.8451 3.4756 -0.0002 8 8 5.1433 3.8775 -0.0001 9 6 6.1377 2.8591 -0.1273 10 6 7.4822 3.3584 -0.6747 11 7 7.8698 3.6724 0.7131 12 6 9.2671 3.2965 0.9674 13 6 9.7012 3.8490 2.3005 14 1 9.0087 4.4225 2.8989 15 6 10.9845 3.6277 2.7535 16 7 11.8279 2.9298 2.0247 17 14 11.5252 4.3192 4.4024 18 1 11.2428 3.3280 5.4716 19 1 12.9818 4.6057 4.3654 20 1 10.7809 5.5735 4.6813 21 6 6.9479 2.6085 1.1523 22 6 3.5377 2.1241 -0.0003 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 0.1613 2.3508 0.0006 27 1 0.7149 4.7473 0.0019 28 1 3.0664 5.4712 0.0099 29 1 5.7678 1.9542 -0.6094 30 1 7.3921 4.2393 -1.3103 31 1 8.0862 2.5716 -1.1268 32 1 9.9019 3.7042 0.1809 33 1 9.3546 2.2101 0.9785 34 1 12.7307 2.7738 2.3437 35 1 7.4092 1.6215 1.1878 36 1 6.4050 2.8537 2.0650 37 1 4.3292 1.3892 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226238910.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:37 Heat of formation + Delta-G solvation = 34.439453 kcal Electronic energy + Delta-G solvation = -18689.157713 eV Core-core repulsion = 15752.641076 eV Total energy + Delta-G solvation = -2936.516637 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.47455 -38.87808 -36.62685 -32.87440 -31.27996 -30.56499 -29.39687 -28.64058 -25.64285 -25.29106 -23.26712 -22.61933 -21.46041 -19.58828 -18.51246 -16.60849 -16.40140 -16.21491 -15.74932 -15.36563 -14.82155 -14.57716 -14.41323 -14.13165 -14.00492 -13.63975 -13.38568 -13.08904 -12.77713 -12.52007 -12.02724 -11.88967 -11.74808 -11.59938 -11.04208 -10.94206 -10.57146 -10.40917 -10.33797 -10.15042 -9.77729 -9.64812 -9.26622 -8.44134 -8.35253 -7.87209 -7.60773 -6.03837 -4.04785 1.07212 1.26259 1.29312 2.14883 3.18721 3.32798 3.38542 3.44354 3.57207 4.42874 4.64276 4.71056 4.71496 4.72291 4.78048 4.82839 5.01736 5.16248 5.28169 5.31506 5.32849 5.44007 5.59953 5.77281 5.86405 6.01557 6.07175 6.14264 6.23185 6.26313 6.30287 6.58954 6.64090 7.12945 7.53816 7.63601 7.84997 8.08757 8.44654 9.03002 9.59472 11.07313 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.027859 B = 0.003237 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.815097 B = 8648.818011 C = 8894.309993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.118 6.118 3 C -0.045 4.045 4 C -0.180 4.180 5 C -0.062 4.062 6 C -0.159 4.159 7 C 0.159 3.841 8 O -0.272 6.272 9 C 0.042 3.958 10 C 0.001 3.999 11 N -0.456 5.456 12 C 0.156 3.844 13 C -0.504 4.504 14 H 0.064 0.936 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.899 3.101 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.005 4.005 22 C -0.193 4.193 23 H 0.084 0.916 24 H 0.107 0.893 25 H 0.084 0.916 26 H 0.122 0.878 27 H 0.130 0.870 28 H 0.134 0.866 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.031 0.969 33 H 0.004 0.996 34 H 0.261 0.739 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.243 -4.317 -6.618 24.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.124 5.876 3 C -0.158 4.158 4 C -0.204 4.204 5 C -0.082 4.082 6 C -0.179 4.179 7 C 0.111 3.889 8 O -0.184 6.184 9 C -0.015 4.015 10 C -0.129 4.129 11 N -0.179 5.179 12 C 0.029 3.971 13 C -0.542 4.542 14 H 0.082 0.918 15 C -0.147 4.147 16 N -0.541 5.541 17 Si 0.727 3.273 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.135 4.135 22 C -0.217 4.217 23 H 0.103 0.897 24 H 0.125 0.875 25 H 0.103 0.897 26 H 0.140 0.860 27 H 0.148 0.852 28 H 0.152 0.848 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.022 0.978 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.334 -4.567 -6.325 23.657 hybrid contribution -0.112 0.332 0.621 0.713 sum -22.446 -4.235 -5.704 23.543 Atomic orbital electron populations 1.23667 0.94907 1.06991 1.05712 1.85592 1.06233 1.03307 1.92425 1.21435 0.95907 0.96304 1.02123 1.20984 0.97903 0.93170 1.08362 1.20806 0.95519 0.95189 0.96683 1.20502 0.90823 0.99487 1.07135 1.19005 0.84734 0.91922 0.93262 1.86211 1.11391 1.34628 1.86175 1.23765 0.87617 0.90322 0.99791 1.24004 0.91795 1.00985 0.96070 1.69098 1.07975 1.37486 1.03315 1.20313 0.83710 0.94911 0.98116 1.21098 0.97026 1.33162 1.02951 0.91811 1.25006 0.96545 0.95420 0.97763 1.69955 1.06010 1.40258 1.37862 0.86466 0.77635 0.79499 0.83678 1.20695 1.21228 1.19705 1.24245 0.95204 0.96432 0.97584 1.20860 0.95597 0.95373 1.09906 0.89727 0.87472 0.89673 0.86008 0.85173 0.84798 0.89573 0.89637 0.90350 0.95129 0.97810 0.92908 0.90507 0.89913 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.15 101.05 0.92 0.02 16 2 S -0.12 -1.21 22.56 -107.50 -2.43 -3.64 16 3 C -0.04 -0.54 6.11 -39.06 -0.24 -0.78 16 4 C -0.18 -1.87 9.36 -39.34 -0.37 -2.24 16 5 C -0.06 -0.64 10.03 -39.64 -0.40 -1.03 16 6 C -0.16 -1.97 9.98 -39.38 -0.39 -2.36 16 7 C 0.16 2.30 6.68 -39.25 -0.26 2.04 16 8 O -0.27 -4.56 10.18 -19.41 -0.20 -4.75 16 9 C 0.04 0.68 4.07 -26.20 -0.11 0.57 16 10 C 0.00 0.01 7.52 -7.54 -0.06 -0.04 16 11 N -0.46 -10.21 6.32 -246.10 -1.55 -11.76 16 12 C 0.16 4.10 4.57 -4.97 -0.02 4.08 16 13 C -0.50 -14.63 9.39 -34.44 -0.32 -14.95 16 14 H 0.06 1.87 7.81 -52.48 -0.41 1.46 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 17 Si 0.90 22.10 29.54 -169.99 -5.02 17.07 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.01 -0.10 7.55 -7.54 -0.06 -0.15 16 22 C -0.19 -2.60 8.77 -39.22 -0.34 -2.95 16 23 H 0.08 0.46 7.75 -51.93 -0.40 0.06 16 24 H 0.11 0.51 8.14 -51.92 -0.42 0.08 16 25 H 0.08 0.49 7.75 -51.92 -0.40 0.08 16 26 H 0.12 0.96 5.87 -52.49 -0.31 0.65 16 27 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 28 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 29 H 0.09 1.17 5.90 -51.93 -0.31 0.86 16 30 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.08 1.31 7.91 -51.93 -0.41 0.90 16 32 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 33 H 0.00 0.11 7.30 -51.93 -0.38 -0.27 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.08 1.42 7.42 -51.93 -0.39 1.04 16 36 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 37 H 0.14 1.79 5.88 -52.49 -0.31 1.48 16 LS Contribution 322.37 15.07 4.86 4.86 Total: -1.00 -31.96 322.37 -10.33 -42.29 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -4.98 Total: -1.43 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -1.74 Total: -16.35 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.82 Total: -38.05 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.20 Total: -4.75 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: -1.21 SS G_CDS: -2.43 Total: -3.64 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.96 -10.33 -42.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226238910.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.732 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds