Wall clock time and date at job start Wed Apr 15 2020 11:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.76205 * 103.00033 * 2 1 4 4 C 1.39042 * 120.04624 * 0.02645 * 3 2 1 5 5 C 1.38094 * 120.02386 * 179.97438 * 4 3 2 6 6 C 1.38231 * 120.13496 * 359.78525 * 5 4 3 7 7 C 1.38782 * 120.10748 * 0.46484 * 6 5 4 8 8 O 1.35894 * 120.01992 * 179.79065 * 7 6 5 9 9 C 1.42902 * 117.00327 * 185.45863 * 8 7 6 10 10 C 1.53515 * 114.17202 * 156.75703 * 9 8 7 11 11 N 1.47481 * 87.92931 * 87.62273 * 10 9 8 12 12 C 1.46907 * 110.99933 * 138.70817 * 11 10 9 13 13 C 1.50696 * 109.47098 * 170.00144 * 12 11 10 14 14 H 1.08003 * 120.00144 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99662 * 180.27621 * 13 12 11 16 16 N 1.31513 * 120.00160 * 359.71438 * 15 13 12 17 17 Si 1.86804 * 120.00020 * 179.72033 * 15 13 12 18 18 H 1.48501 * 109.47359 * 89.99335 * 17 15 13 19 19 H 1.48494 * 109.47197 * 209.99471 * 17 15 13 20 20 H 1.48498 * 109.47063 * 329.99760 * 17 15 13 21 21 C 1.47476 * 87.84036 * 27.00959 * 11 10 9 22 22 C 1.38602 * 119.96637 * 359.51618 * 7 6 5 23 23 H 1.08992 * 109.47720 * 59.99799 * 1 2 3 24 24 H 1.09007 * 109.46996 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47516 * 299.99393 * 1 2 3 26 26 H 1.07992 * 119.98638 * 359.97400 * 4 3 2 27 27 H 1.08003 * 119.92980 * 180.02562 * 5 4 3 28 28 H 1.08004 * 119.94726 * 180.23895 * 6 5 4 29 29 H 1.09003 * 113.25536 * 23.80186 * 9 8 7 30 30 H 1.08994 * 113.47417 * 332.85679 * 10 9 8 31 31 H 1.08999 * 113.47759 * 202.38543 * 10 9 8 32 32 H 1.08990 * 109.47152 * 49.99146 * 12 11 10 33 33 H 1.09005 * 109.46410 * 289.99462 * 12 11 10 34 34 H 0.97005 * 119.99595 * 180.02562 * 16 15 13 35 35 H 1.09003 * 113.47621 * 87.75500 * 21 11 10 36 36 H 1.08996 * 113.47917 * 218.22213 * 21 11 10 37 37 H 1.08001 * 120.06510 * 180.23231 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1942 2.6660 0.0006 5 6 1.5054 4.0114 0.0011 6 6 2.8265 4.4181 0.0056 7 6 3.8451 3.4756 -0.0002 8 8 5.1433 3.8775 -0.0001 9 6 6.1377 2.8591 -0.1273 10 6 7.4822 3.3584 -0.6747 11 7 7.8698 3.6724 0.7131 12 6 9.2671 3.2965 0.9674 13 6 9.7012 3.8490 2.3005 14 1 9.0087 4.4225 2.8989 15 6 10.9845 3.6277 2.7535 16 7 11.8279 2.9298 2.0247 17 14 11.5252 4.3192 4.4024 18 1 11.2428 3.3280 5.4716 19 1 12.9818 4.6057 4.3654 20 1 10.7809 5.5735 4.6813 21 6 6.9479 2.6085 1.1523 22 6 3.5377 2.1241 -0.0003 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 0.1613 2.3508 0.0006 27 1 0.7149 4.7473 0.0019 28 1 3.0664 5.4712 0.0099 29 1 5.7678 1.9542 -0.6094 30 1 7.3921 4.2393 -1.3103 31 1 8.0862 2.5716 -1.1268 32 1 9.9019 3.7042 0.1809 33 1 9.3546 2.2101 0.9785 34 1 12.7307 2.7738 2.3437 35 1 7.4092 1.6215 1.1878 36 1 6.4050 2.8537 2.0650 37 1 4.3292 1.3892 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226238910.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:37 Heat of formation + Delta-G solvation = 13.353901 kcal Electronic energy + Delta-G solvation = -18690.072051 eV Core-core repulsion = 15752.641076 eV Total energy + Delta-G solvation = -2937.430975 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.75137 -40.10119 -37.82089 -35.03752 -32.22184 -31.56885 -30.92505 -29.42045 -27.41784 -26.89461 -24.51724 -23.66212 -23.11322 -20.85900 -19.61352 -18.57237 -17.56209 -17.24044 -17.19012 -16.53741 -16.43133 -15.89649 -15.62512 -15.21694 -15.09366 -14.61085 -14.57738 -14.41297 -13.92006 -13.71437 -13.42514 -13.29360 -13.10439 -12.80245 -12.62869 -12.46149 -12.33099 -12.09703 -11.60391 -11.53275 -11.29551 -11.13683 -10.64577 -10.61908 -9.64669 -9.36705 -8.42043 -8.25540 -6.35662 0.17122 0.37601 0.53631 1.37877 1.39463 1.48251 1.51694 2.01808 2.37614 2.65380 3.06391 3.27257 3.29147 3.68926 3.91918 3.97616 4.14957 4.24602 4.29495 4.31587 4.39166 4.44331 4.51565 4.57114 4.63694 4.71433 4.82865 4.87168 4.89531 5.01189 5.16459 5.29414 5.40747 5.54588 5.73936 5.74225 6.04077 6.38481 6.44859 6.77894 7.33835 8.85517 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.027859 B = 0.003237 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.815097 B = 8648.818011 C = 8894.309993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.155 6.155 3 C -0.054 4.054 4 C -0.174 4.174 5 C -0.055 4.055 6 C -0.170 4.170 7 C 0.130 3.870 8 O -0.294 6.294 9 C 0.069 3.931 10 C 0.000 4.000 11 N -0.484 5.484 12 C 0.171 3.829 13 C -0.529 4.529 14 H 0.053 0.947 15 C 0.003 3.997 16 N -0.932 5.932 17 Si 0.970 3.030 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.269 1.269 21 C -0.008 4.008 22 C -0.208 4.208 23 H 0.097 0.903 24 H 0.125 0.875 25 H 0.095 0.905 26 H 0.153 0.847 27 H 0.166 0.834 28 H 0.139 0.861 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.005 0.995 33 H -0.012 1.012 34 H 0.266 0.734 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.909 -4.375 -6.349 27.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.088 5.912 3 C -0.166 4.166 4 C -0.198 4.198 5 C -0.074 4.074 6 C -0.191 4.191 7 C 0.083 3.917 8 O -0.208 6.208 9 C 0.012 3.988 10 C -0.129 4.129 11 N -0.206 5.206 12 C 0.044 3.956 13 C -0.567 4.567 14 H 0.072 0.928 15 C -0.195 4.195 16 N -0.572 5.572 17 Si 0.794 3.206 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.193 1.193 21 C -0.138 4.138 22 C -0.232 4.232 23 H 0.116 0.884 24 H 0.143 0.857 25 H 0.114 0.886 26 H 0.170 0.830 27 H 0.184 0.816 28 H 0.156 0.844 29 H 0.133 0.867 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.023 0.977 33 H 0.005 0.995 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -25.026 -4.632 -6.066 26.164 hybrid contribution 0.536 0.310 0.497 0.794 sum -24.490 -4.322 -5.569 25.484 Atomic orbital electron populations 1.23797 0.90906 1.08606 1.06863 1.85739 1.10673 1.02580 1.92247 1.21640 0.95708 0.97488 1.01801 1.21414 0.99007 0.92926 1.06438 1.21221 0.95308 0.96053 0.94818 1.20773 0.91476 0.99544 1.07300 1.19285 0.83984 0.92964 0.95475 1.86159 1.12595 1.35028 1.86974 1.23463 0.87068 0.91120 0.97189 1.24075 0.93000 1.01797 0.94010 1.69001 1.05883 1.39080 1.06683 1.19983 0.85935 0.93362 0.96303 1.21399 0.97503 1.33650 1.04174 0.92832 1.25906 0.96425 0.95486 1.01681 1.70060 1.06449 1.41027 1.39680 0.85377 0.77421 0.78896 0.78910 1.19575 1.20229 1.19337 1.24262 0.95050 0.95584 0.98876 1.20891 0.96524 0.94903 1.10859 0.88379 0.85671 0.88594 0.82992 0.81629 0.84351 0.86672 0.89057 0.89139 0.97666 0.99464 0.92479 0.90225 0.90865 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 9.15 113.37 1.04 -0.19 16 2 S -0.15 -2.93 22.56 -56.49 -1.27 -4.20 16 3 C -0.05 -1.20 6.11 22.61 0.14 -1.06 16 4 C -0.17 -3.07 9.36 22.43 0.21 -2.86 16 5 C -0.05 -0.95 10.03 22.23 0.22 -0.73 16 6 C -0.17 -4.01 9.98 22.40 0.22 -3.79 16 7 C 0.13 3.72 6.68 22.49 0.15 3.87 16 8 O -0.29 -9.96 10.18 -92.35 -0.94 -10.90 16 9 C 0.07 2.23 4.07 30.94 0.13 2.35 16 10 C 0.00 0.01 7.52 83.58 0.63 0.63 16 11 N -0.48 -22.40 6.32 -932.89 -5.89 -28.29 16 12 C 0.17 9.40 4.57 85.55 0.39 9.79 16 13 C -0.53 -31.61 9.39 25.60 0.24 -31.37 16 14 H 0.05 3.23 7.81 -2.91 -0.02 3.21 16 15 C 0.00 0.19 5.46 84.65 0.46 0.65 16 16 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 17 Si 0.97 45.66 29.54 68.60 2.03 47.69 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 21 C -0.01 -0.32 7.55 83.58 0.63 0.31 16 22 C -0.21 -5.51 8.77 22.50 0.20 -5.31 16 23 H 0.10 0.68 7.75 -2.39 -0.02 0.66 16 24 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.10 0.72 7.75 -2.39 -0.02 0.70 16 26 H 0.15 1.70 5.87 -2.91 -0.02 1.69 16 27 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 28 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 29 H 0.12 3.08 5.90 -2.39 -0.01 3.07 16 30 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 31 H 0.09 3.06 7.91 -2.39 -0.02 3.04 16 32 H 0.01 0.31 8.08 -2.39 -0.02 0.29 16 33 H -0.01 -0.70 7.30 -2.38 -0.02 -0.72 16 34 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 35 H 0.08 3.05 7.42 -2.39 -0.02 3.03 16 36 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.13 3.45 5.88 -2.91 -0.02 3.44 16 Total: -1.00 -70.67 322.37 -0.07 -70.74 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.06 Total: 9.20 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: 4.66 Total: -27.70 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -5.61 Total: -84.82 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -0.94 Total: -10.90 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Atomic # 16 Polarization: -2.93 SS G_CDS: -1.27 Total: -4.20 kcal Total: -70.67 -0.07 -70.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226238910.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.093 kcal (2) G-P(sol) polarization free energy of solvation -70.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds