Wall clock time and date at job start Wed Apr 15 2020 11:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 116.99962 * 2 1 4 4 O 1.20819 * 120.00184 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99787 * 180.02562 * 3 2 1 6 6 C 1.50699 * 109.46967 * 179.97438 * 5 3 2 7 7 N 1.33312 * 126.54968 * 89.97948 * 6 5 3 8 8 N 1.28997 * 107.35484 * 179.97438 * 7 6 5 9 9 N 1.28787 * 108.72606 * 359.97438 * 8 7 6 10 10 C 1.46494 * 125.44859 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.46777 * 90.02517 * 10 9 8 12 12 H 1.08995 * 109.47448 * 304.99480 * 11 10 9 13 13 C 1.47197 * 109.47200 * 64.99954 * 11 10 9 14 14 N 7.35985 * 138.77961 * 318.72383 * 2 1 3 15 15 C 1.53002 * 109.46893 * 184.99600 * 11 10 9 16 16 C 1.50706 * 109.47153 * 174.99718 * 15 11 10 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 11 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 11 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.28882 * 109.10177 * 0.22791 * 9 8 7 25 25 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47022 * 300.00305 * 1 2 3 27 27 H 1.08998 * 109.47000 * 59.99760 * 1 2 3 28 28 H 1.08996 * 109.47203 * 59.99717 * 5 3 2 29 29 H 1.08999 * 109.47074 * 300.00086 * 5 3 2 30 30 H 1.08997 * 109.47647 * 330.02719 * 10 9 8 31 31 H 1.09001 * 109.47420 * 210.02239 * 10 9 8 32 32 H 1.09004 * 109.47178 * 55.00508 * 15 11 10 33 33 H 1.08993 * 109.47411 * 295.00191 * 15 11 10 34 34 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 3.9936 2.7199 -0.0011 7 7 4.2188 3.4816 1.0696 8 7 4.5647 4.6496 0.6451 9 7 4.5625 4.6388 -0.6428 10 6 4.8992 5.7761 -1.5025 11 6 6.3997 5.7629 -1.8012 12 1 6.9566 5.7466 -0.8644 13 6 6.7324 4.5660 -2.5908 14 7 6.9880 3.6448 -3.1994 15 6 6.7728 7.0170 -2.5944 16 6 8.2673 7.0662 -2.7826 17 1 8.8887 6.2814 -2.3774 18 6 8.8412 8.1132 -3.4721 19 7 8.0840 9.0662 -3.9702 20 14 10.6935 8.1739 -3.7060 21 1 11.0551 9.3880 -4.4809 22 1 11.3588 8.2172 -2.3790 23 1 11.1391 6.9647 -4.4439 24 7 4.2116 3.4689 -1.0541 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.9557 0.7808 -0.8908 29 1 3.9564 0.7805 0.8891 30 1 4.6379 6.7049 -0.9955 31 1 4.3422 5.7029 -2.4366 32 1 6.4460 7.9024 -2.0492 33 1 6.2846 6.9894 -3.5685 34 1 7.1221 9.0346 -3.8490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326709023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:49 Heat of formation + Delta-G solvation = 57.740179 kcal Electronic energy + Delta-G solvation = -20656.270897 eV Core-core repulsion = 17206.764192 eV Total energy + Delta-G solvation = -3449.506705 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.35009 -40.72109 -37.55359 -36.86704 -35.18961 -34.07017 -33.69603 -32.27789 -30.47492 -28.02293 -27.29245 -24.72110 -23.36631 -22.54158 -22.39262 -21.21064 -18.17749 -18.06442 -17.47175 -17.02111 -16.86125 -16.59270 -16.47203 -14.90531 -14.39162 -14.22690 -13.89670 -13.78432 -13.74676 -13.68107 -13.03533 -12.64673 -12.46770 -12.40530 -12.14517 -11.86217 -11.81539 -11.58294 -11.15148 -11.13917 -10.96219 -10.94404 -10.82778 -10.64773 -10.42481 -10.20199 -10.04229 -8.87085 -8.54930 -6.57622 -4.31192 1.24623 1.77789 1.87066 1.96007 2.60087 3.25847 3.34429 3.36948 3.38418 3.56156 3.64434 4.09003 4.31798 4.38924 4.45438 4.73841 4.77373 4.82630 4.85907 4.91236 5.11293 5.18208 5.20890 5.30535 5.52260 5.66995 5.74876 5.93562 6.00514 6.20359 6.80482 6.94334 7.38188 7.80352 8.07411 8.21276 8.35988 8.63253 9.39590 10.83221 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.041764 B = 0.003209 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.267624 B = 8723.597979 C = 8875.241880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.469 3.531 4 O -0.495 6.495 5 C -0.011 4.011 6 C 0.163 3.837 7 N -0.276 5.276 8 N -0.052 5.052 9 N -0.128 5.128 10 C 0.130 3.870 11 C 0.004 3.996 12 H 0.116 0.884 13 C 0.228 3.772 14 N -0.441 5.441 15 C 0.022 3.978 16 C -0.610 4.610 17 H 0.052 0.948 18 C 0.025 3.975 19 N -0.903 5.903 20 Si 1.066 2.934 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.287 1.287 24 N -0.285 5.285 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.122 0.878 32 H 0.038 0.962 33 H 0.024 0.976 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.738 -13.685 8.403 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.310 3.690 4 O -0.382 6.382 5 C -0.051 4.051 6 C -0.120 4.120 7 N -0.147 5.147 8 N -0.045 5.045 9 N -0.041 5.041 10 C 0.010 3.990 11 C -0.020 4.020 12 H 0.134 0.866 13 C -0.090 4.090 14 N -0.116 5.116 15 C -0.017 4.017 16 C -0.648 4.648 17 H 0.071 0.929 18 C -0.181 4.181 19 N -0.538 5.538 20 Si 0.894 3.106 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.214 1.214 24 N -0.136 5.136 25 H 0.122 0.878 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.140 0.860 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.196 -13.254 7.037 18.723 hybrid contribution -1.631 -0.885 0.643 1.964 sum -12.828 -14.139 7.680 20.578 Atomic orbital electron populations 1.23303 0.75786 1.03843 1.02785 1.86470 1.23803 1.32756 1.84286 1.23240 0.91334 0.81667 0.72805 1.90724 1.66927 1.36332 1.44179 1.19298 0.88767 0.88322 1.08711 1.24413 1.03944 0.98246 0.85398 1.75760 1.16071 0.96936 1.25961 1.78969 1.15299 1.16140 0.94060 1.50338 1.39412 1.09284 1.05059 1.22786 0.97613 0.84176 0.94470 1.19468 0.91809 0.91215 0.99468 0.86589 1.28602 0.93314 0.93361 0.93751 1.80912 1.08347 1.12652 1.09737 1.19319 0.98995 0.88722 0.94644 1.21858 0.90774 1.11562 1.40642 0.92923 1.25806 1.07103 0.92271 0.92880 1.70828 1.07129 1.33419 1.42461 0.83562 0.73958 0.76360 0.76739 1.20527 1.21115 1.21383 1.74681 1.17796 0.93432 1.27641 0.87828 0.91729 0.91757 0.84585 0.84246 0.84325 0.85982 0.94409 0.95737 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.31 10.57 -39.24 -0.41 -3.72 16 3 C 0.47 5.34 7.95 36.01 0.29 5.63 16 4 O -0.50 -7.46 15.78 -18.74 -0.30 -7.76 16 5 C -0.01 -0.11 6.44 -29.03 -0.19 -0.29 16 6 C 0.16 2.37 6.86 -156.62 -1.07 1.30 16 7 N -0.28 -4.41 12.50 32.45 0.41 -4.01 16 8 N -0.05 -0.84 13.25 60.35 0.80 -0.04 16 9 N -0.13 -1.99 3.76 -10.67 -0.04 -2.03 16 10 C 0.13 1.75 5.97 -4.04 -0.02 1.72 16 11 C 0.00 0.06 2.42 -93.40 -0.23 -0.16 16 12 H 0.12 1.93 8.14 -51.93 -0.42 1.51 16 13 C 0.23 4.50 13.39 -20.85 -0.28 4.22 16 14 N -0.44 -9.46 18.52 42.05 0.78 -8.68 16 15 C 0.02 0.45 3.74 -27.88 -0.10 0.35 16 16 C -0.61 -15.50 8.60 -34.44 -0.30 -15.79 16 17 H 0.05 1.36 7.59 -52.49 -0.40 0.96 16 18 C 0.02 0.66 5.46 -17.82 -0.10 0.56 16 19 N -0.90 -25.29 13.65 55.43 0.76 -24.53 16 20 Si 1.07 24.05 29.90 -169.99 -5.08 18.97 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 N -0.28 -4.57 11.82 32.47 0.38 -4.18 16 25 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 27 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 28 H 0.14 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.14 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.14 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.04 0.76 8.01 -51.93 -0.42 0.34 16 33 H 0.02 0.53 8.00 -51.93 -0.42 0.12 16 34 H 0.27 7.29 7.22 -40.82 -0.29 7.00 16 LS Contribution 318.41 15.07 4.80 4.80 Total: -1.00 -34.17 318.41 -2.55 -36.72 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: -3.70 Total: -4.38 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -0.94 Total: -1.15 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 3.08 Total: -43.48 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -0.71 Total: -11.49 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -5.08 Total: 18.97 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.17 -2.55 -36.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326709023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.462 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds