Wall clock time and date at job start Wed Apr 15 2020 11:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 116.99822 * 2 1 4 4 O 1.20823 * 120.00044 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00138 * 179.97438 * 3 2 1 6 6 C 1.50694 * 109.47098 * 180.02562 * 5 3 2 7 7 N 1.33317 * 126.55010 * 89.98075 * 6 5 3 8 8 N 1.28997 * 107.35334 * 179.97438 * 7 6 5 9 9 N 1.28782 * 108.73005 * 0.02562 * 8 7 6 10 10 C 1.46494 * 125.45600 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47305 * 90.01771 * 10 9 8 12 12 H 1.09000 * 109.46986 * 55.00346 * 11 10 9 13 13 C 1.47206 * 109.47021 * 295.00530 * 11 10 9 14 14 N 8.79830 * 135.50341 * 3.81473 * 2 1 3 15 15 C 1.52997 * 109.47415 * 175.00464 * 11 10 9 16 16 C 1.50702 * 109.47345 * 185.00243 * 15 11 10 17 17 H 1.08004 * 119.99515 * 359.97438 * 16 15 11 18 18 C 1.37877 * 119.99986 * 179.97438 * 16 15 11 19 19 N 1.31518 * 120.00031 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99746 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47233 * 90.00115 * 20 18 16 22 22 H 1.48500 * 109.46846 * 210.00038 * 20 18 16 23 23 H 1.48505 * 109.47120 * 329.99702 * 20 18 16 24 24 N 1.28887 * 109.09683 * 0.22486 * 9 8 7 25 25 H 1.09003 * 109.46741 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47374 * 299.99773 * 1 2 3 27 27 H 1.08999 * 109.46829 * 60.00305 * 1 2 3 28 28 H 1.09000 * 109.46669 * 60.00142 * 5 3 2 29 29 H 1.09001 * 109.47014 * 300.00000 * 5 3 2 30 30 H 1.09006 * 109.46799 * 330.02556 * 10 9 8 31 31 H 1.09000 * 109.47509 * 210.02043 * 10 9 8 32 32 H 1.09001 * 109.46992 * 305.00579 * 15 11 10 33 33 H 1.08998 * 109.47097 * 64.99767 * 15 11 10 34 34 H 0.96993 * 119.99693 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 3.9935 2.7201 0.0011 7 7 4.2178 3.4813 1.0723 8 7 4.5640 4.6494 0.6486 9 7 4.5617 4.6396 -0.6392 10 6 4.8986 5.7774 -1.4982 11 6 6.3991 5.7643 -1.7970 12 1 6.6761 4.8005 -2.2240 13 6 7.1497 5.9824 -0.5496 14 7 7.7278 6.1528 0.4103 15 6 6.7306 6.8775 -2.7929 16 6 8.1839 6.7877 -3.1814 17 1 8.8087 6.0142 -2.7596 18 6 8.7158 7.6929 -4.0750 19 7 7.9548 8.6344 -4.5889 20 14 10.5171 7.5811 -4.5570 21 1 10.6579 6.7020 -5.7455 22 1 11.0278 8.9373 -4.8811 23 1 11.2975 7.0152 -3.4274 24 7 4.2106 3.4700 -1.0513 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.9564 0.7807 -0.8892 29 1 3.9557 0.7810 0.8908 30 1 4.6374 6.7059 -0.9904 31 1 4.3414 5.7050 -2.4323 32 1 6.1094 6.7666 -3.6817 33 1 6.5366 7.8463 -2.3328 34 1 8.3289 9.2709 -5.2179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326709024.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:52 Heat of formation + Delta-G solvation = 60.880248 kcal Electronic energy + Delta-G solvation = -20571.463904 eV Core-core repulsion = 17122.093363 eV Total energy + Delta-G solvation = -3449.370541 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -44.28930 -40.69649 -37.42958 -36.83396 -35.11527 -33.83841 -33.60686 -32.20368 -30.48610 -28.10960 -27.37528 -25.03363 -23.30024 -22.49644 -22.10317 -21.17296 -18.14166 -17.84859 -17.46737 -16.86260 -16.74293 -16.59036 -16.19243 -14.79094 -14.67803 -14.24312 -14.07962 -13.84615 -13.62553 -13.37506 -12.82097 -12.68878 -12.39625 -12.32407 -12.12466 -11.86409 -11.65346 -11.29806 -11.13064 -11.06835 -10.94602 -10.92442 -10.84735 -10.68389 -10.57282 -10.19023 -9.79005 -9.44116 -8.59527 -6.24148 -4.28651 1.30567 1.83077 1.89618 2.02897 2.63859 3.21541 3.29143 3.33101 3.36122 3.45821 3.68919 4.16046 4.29316 4.39751 4.48024 4.79129 4.82528 4.87496 4.90768 4.97500 5.14684 5.20100 5.23455 5.34312 5.56042 5.76290 5.91043 6.02861 6.03728 6.29631 7.15873 7.24778 7.40730 7.69565 8.02125 8.19329 8.42545 8.74502 9.38113 10.86556 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033015 B = 0.003232 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.889426 B = 8661.828861 C = 8911.999521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.468 3.532 4 O -0.495 6.495 5 C -0.009 4.009 6 C 0.160 3.840 7 N -0.278 5.278 8 N -0.050 5.050 9 N -0.127 5.127 10 C 0.129 3.871 11 C -0.002 4.002 12 H 0.115 0.885 13 C 0.224 3.776 14 N -0.441 5.441 15 C 0.035 3.965 16 C -0.531 4.531 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.889 5.889 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.273 1.273 24 N -0.287 5.287 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.125 0.875 31 H 0.138 0.862 32 H 0.047 0.953 33 H 0.034 0.966 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.448 -15.691 4.375 21.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.309 3.691 4 O -0.381 6.381 5 C -0.050 4.050 6 C -0.122 4.122 7 N -0.149 5.149 8 N -0.043 5.043 9 N -0.040 5.040 10 C 0.010 3.990 11 C -0.026 4.026 12 H 0.132 0.868 13 C -0.094 4.094 14 N -0.117 5.117 15 C -0.003 4.003 16 C -0.569 4.569 17 H 0.076 0.924 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.198 1.198 24 N -0.138 5.138 25 H 0.121 0.879 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.143 0.857 31 H 0.155 0.845 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.638 -14.343 5.941 20.018 hybrid contribution 0.480 -0.320 -0.983 1.139 sum -12.158 -14.663 4.959 19.683 Atomic orbital electron populations 1.23299 0.75820 1.03811 1.02789 1.86468 1.23776 1.32797 1.84315 1.23268 0.91385 0.81650 0.72837 1.90730 1.66931 1.36340 1.44113 1.19290 0.88687 0.88290 1.08694 1.24428 1.04069 0.98237 0.85493 1.75784 1.16063 0.96997 1.26072 1.79047 1.14938 1.16094 0.94226 1.50405 1.39170 1.09366 1.05064 1.22813 0.97724 0.83727 0.94775 1.19639 0.87552 1.06342 0.89043 0.86767 1.28722 0.94012 0.93019 0.93612 1.80942 1.09044 1.09052 1.12627 1.19215 0.98447 0.90714 0.91959 1.21013 0.94329 1.15056 1.26513 0.92356 1.24929 0.98182 0.94915 0.95715 1.69917 1.35947 1.16621 1.30165 0.86537 0.84725 0.77563 0.78984 1.20323 1.21002 1.19821 1.74598 1.18147 0.93432 1.27594 0.87867 0.91764 0.91732 0.84445 0.84355 0.85712 0.84452 0.93509 0.94760 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.13 10.57 -39.25 -0.41 -3.54 16 3 C 0.47 5.08 7.95 36.01 0.29 5.36 16 4 O -0.50 -7.29 15.78 -18.75 -0.30 -7.58 16 5 C -0.01 -0.08 6.44 -29.04 -0.19 -0.27 16 6 C 0.16 2.27 6.86 -156.63 -1.07 1.19 16 7 N -0.28 -4.63 12.50 32.44 0.41 -4.23 16 8 N -0.05 -0.88 12.93 60.35 0.78 -0.10 16 9 N -0.13 -1.99 3.77 -10.67 -0.04 -2.03 16 10 C 0.13 1.76 5.97 -4.04 -0.02 1.73 16 11 C 0.00 -0.04 2.42 -93.40 -0.23 -0.27 16 12 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 13 C 0.22 4.47 13.38 -20.84 -0.28 4.20 16 14 N -0.44 -9.70 18.52 42.05 0.78 -8.92 16 15 C 0.04 0.74 4.42 -27.88 -0.12 0.61 16 16 C -0.53 -13.30 8.60 -34.44 -0.30 -13.60 16 17 H 0.06 1.47 7.59 -52.48 -0.40 1.07 16 18 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -24.13 13.29 55.43 0.74 -23.39 16 20 Si 0.89 20.52 29.54 -169.99 -5.02 15.49 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 N -0.29 -4.30 12.13 32.46 0.39 -3.91 16 25 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 27 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 28 H 0.14 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.14 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.14 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 319.71 15.07 4.82 4.82 Total: -1.00 -33.87 319.71 -2.57 -36.44 By element: Atomic # 1 Polarization: -1.19 SS G_CDS: -3.76 Total: -4.95 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.95 Total: 1.89 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 3.05 Total: -42.57 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -0.71 Total: -11.12 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.87 -2.57 -36.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326709024.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.320 kcal (2) G-P(sol) polarization free energy of solvation -33.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds