Wall clock time and date at job start Wed Apr 15 2020 11:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 116.99822 * 2 1 4 4 O 1.20823 * 120.00044 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00138 * 179.97438 * 3 2 1 6 6 C 1.50694 * 109.47098 * 180.02562 * 5 3 2 7 7 N 1.33317 * 126.55010 * 89.98075 * 6 5 3 8 8 N 1.28997 * 107.35334 * 179.97438 * 7 6 5 9 9 N 1.28782 * 108.73005 * 0.02562 * 8 7 6 10 10 C 1.46494 * 125.45600 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47305 * 90.01771 * 10 9 8 12 12 H 1.09000 * 109.46986 * 55.00346 * 11 10 9 13 13 C 1.47206 * 109.47021 * 295.00530 * 11 10 9 14 14 N 8.79830 * 135.50341 * 3.81473 * 2 1 3 15 15 C 1.52997 * 109.47415 * 175.00464 * 11 10 9 16 16 C 1.50702 * 109.47345 * 185.00243 * 15 11 10 17 17 H 1.08004 * 119.99515 * 359.97438 * 16 15 11 18 18 C 1.37877 * 119.99986 * 179.97438 * 16 15 11 19 19 N 1.31518 * 120.00031 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99746 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47233 * 90.00115 * 20 18 16 22 22 H 1.48500 * 109.46846 * 210.00038 * 20 18 16 23 23 H 1.48505 * 109.47120 * 329.99702 * 20 18 16 24 24 N 1.28887 * 109.09683 * 0.22486 * 9 8 7 25 25 H 1.09003 * 109.46741 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47374 * 299.99773 * 1 2 3 27 27 H 1.08999 * 109.46829 * 60.00305 * 1 2 3 28 28 H 1.09000 * 109.46669 * 60.00142 * 5 3 2 29 29 H 1.09001 * 109.47014 * 300.00000 * 5 3 2 30 30 H 1.09006 * 109.46799 * 330.02556 * 10 9 8 31 31 H 1.09000 * 109.47509 * 210.02043 * 10 9 8 32 32 H 1.09001 * 109.46992 * 305.00579 * 15 11 10 33 33 H 1.08998 * 109.47097 * 64.99767 * 15 11 10 34 34 H 0.96993 * 119.99693 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 3.9935 2.7201 0.0011 7 7 4.2178 3.4813 1.0723 8 7 4.5640 4.6494 0.6486 9 7 4.5617 4.6396 -0.6392 10 6 4.8986 5.7774 -1.4982 11 6 6.3991 5.7643 -1.7970 12 1 6.6761 4.8005 -2.2240 13 6 7.1497 5.9824 -0.5496 14 7 7.7278 6.1528 0.4103 15 6 6.7306 6.8775 -2.7929 16 6 8.1839 6.7877 -3.1814 17 1 8.8087 6.0142 -2.7596 18 6 8.7158 7.6929 -4.0750 19 7 7.9548 8.6344 -4.5889 20 14 10.5171 7.5811 -4.5570 21 1 10.6579 6.7020 -5.7455 22 1 11.0278 8.9373 -4.8811 23 1 11.2975 7.0152 -3.4274 24 7 4.2106 3.4700 -1.0513 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.9564 0.7807 -0.8892 29 1 3.9557 0.7810 0.8908 30 1 4.6374 6.7059 -0.9904 31 1 4.3414 5.7050 -2.4323 32 1 6.1094 6.7666 -3.6817 33 1 6.5366 7.8463 -2.3328 34 1 8.3289 9.2709 -5.2179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326709024.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:50 Heat of formation + Delta-G solvation = 38.047445 kcal Electronic energy + Delta-G solvation = -20572.454009 eV Core-core repulsion = 17122.093363 eV Total energy + Delta-G solvation = -3450.360646 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.44576 -41.49864 -38.86713 -37.65854 -36.50488 -35.44918 -34.74397 -33.78376 -31.53339 -29.36938 -28.20660 -26.57904 -24.36033 -23.86177 -23.62437 -22.01667 -19.26914 -19.01373 -18.58484 -18.26779 -17.69410 -17.61187 -17.46684 -16.55395 -15.70292 -15.48273 -15.09730 -15.03671 -14.58190 -14.50728 -14.37884 -14.04908 -13.71996 -13.47979 -13.27589 -13.07221 -12.96288 -12.82777 -12.68789 -12.57060 -12.22314 -12.10589 -12.04542 -11.85555 -11.81540 -11.62543 -11.39517 -11.07691 -10.55974 -8.22230 -6.29616 0.11580 0.81170 0.93197 1.09827 1.40142 1.43535 1.51108 1.80096 1.83215 1.85589 2.40669 2.75297 2.92810 3.15476 3.22831 3.59224 3.74411 3.92756 4.15095 4.24787 4.33739 4.35149 4.42295 4.46358 4.59189 4.66463 4.72577 4.76502 5.10923 5.31236 5.41358 5.53417 5.74438 6.13936 6.60583 6.63409 6.82163 7.25151 7.39127 8.88275 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033015 B = 0.003232 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.889426 B = 8661.828861 C = 8911.999521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.473 3.527 4 O -0.541 6.541 5 C -0.010 4.010 6 C 0.163 3.837 7 N -0.300 5.300 8 N -0.078 5.078 9 N -0.127 5.127 10 C 0.131 3.869 11 C 0.011 3.989 12 H 0.127 0.873 13 C 0.235 3.765 14 N -0.481 5.481 15 C 0.042 3.958 16 C -0.541 4.541 17 H 0.051 0.949 18 C 0.018 3.982 19 N -0.917 5.917 20 Si 0.944 3.056 21 H -0.267 1.267 22 H -0.285 1.285 23 H -0.279 1.279 24 N -0.292 5.292 25 H 0.137 0.863 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.172 0.828 29 H 0.169 0.831 30 H 0.137 0.863 31 H 0.171 0.829 32 H 0.056 0.944 33 H 0.018 0.982 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.928 -17.572 3.790 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.267 6.267 3 C 0.316 3.684 4 O -0.431 6.431 5 C -0.049 4.049 6 C -0.120 4.120 7 N -0.171 5.171 8 N -0.071 5.071 9 N -0.040 5.040 10 C 0.012 3.988 11 C -0.012 4.012 12 H 0.145 0.855 13 C -0.082 4.082 14 N -0.158 5.158 15 C 0.003 3.997 16 C -0.579 4.579 17 H 0.070 0.930 18 C -0.182 4.182 19 N -0.557 5.557 20 Si 0.771 3.229 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.205 1.205 24 N -0.143 5.143 25 H 0.155 0.845 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.190 0.810 29 H 0.186 0.814 30 H 0.155 0.845 31 H 0.189 0.811 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.116 -16.257 5.361 21.565 hybrid contribution 0.578 0.179 -0.787 0.992 sum -12.539 -16.078 4.574 20.896 Atomic orbital electron populations 1.23576 0.74520 1.05926 1.02387 1.86470 1.25028 1.31539 1.83635 1.23546 0.91918 0.81479 0.71449 1.90721 1.68005 1.37845 1.46547 1.19657 0.87702 0.85765 1.11803 1.25272 1.02502 0.99758 0.84472 1.75753 1.16805 0.97266 1.27229 1.79016 1.16083 1.16863 0.95150 1.50488 1.38961 1.09851 1.04719 1.22913 0.95448 0.84028 0.96374 1.19541 0.89552 1.05350 0.86776 0.85512 1.29327 0.93227 0.91904 0.93765 1.80939 1.10482 1.10295 1.14071 1.19021 0.96417 0.91275 0.93006 1.21424 0.96424 1.14321 1.25764 0.93033 1.25588 1.01319 0.95034 0.96217 1.69989 1.37224 1.17407 1.31061 0.85754 0.80990 0.77488 0.78696 1.19180 1.21048 1.20454 1.74604 1.18427 0.93323 1.27930 0.84486 0.92272 0.92131 0.81041 0.81396 0.84457 0.81125 0.92599 0.96316 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.35 -5.35 10.57 -51.38 -0.54 -5.90 16 3 C 0.47 9.41 7.95 71.24 0.57 9.97 16 4 O -0.54 -15.54 15.78 21.97 0.35 -15.20 16 5 C -0.01 -0.15 6.44 29.10 0.19 0.04 16 6 C 0.16 4.32 6.86 138.55 0.95 5.27 16 7 N -0.30 -9.73 12.50 -51.27 -0.64 -10.37 16 8 N -0.08 -2.68 12.93 37.02 0.48 -2.21 16 9 N -0.13 -3.77 3.77 -187.68 -0.71 -4.47 16 10 C 0.13 3.32 5.97 86.38 0.52 3.83 16 11 C 0.01 0.36 2.42 -12.60 -0.03 0.33 16 12 H 0.13 3.84 8.14 -2.39 -0.02 3.83 16 13 C 0.23 9.25 13.38 89.47 1.20 10.44 16 14 N -0.48 -21.20 18.52 19.98 0.37 -20.83 16 15 C 0.04 1.70 4.42 29.85 0.13 1.83 16 16 C -0.54 -26.74 8.60 25.60 0.22 -26.52 16 17 H 0.05 2.56 7.59 -2.91 -0.02 2.54 16 18 C 0.02 0.95 5.46 84.65 0.46 1.41 16 19 N -0.92 -49.55 13.29 21.45 0.28 -49.26 16 20 Si 0.94 41.72 29.54 68.60 2.03 43.74 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 24 N -0.29 -8.20 12.13 -51.20 -0.62 -8.82 16 25 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 27 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 28 H 0.17 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.17 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.14 3.14 8.14 -2.38 -0.02 3.12 16 31 H 0.17 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -73.24 319.71 7.53 -65.72 By element: Atomic # 1 Polarization: -1.65 SS G_CDS: 1.13 Total: -0.51 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 5.40 Total: 8.11 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -0.84 Total: -95.96 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.20 Total: -21.09 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -73.24 7.53 -65.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326709024.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.764 kcal (2) G-P(sol) polarization free energy of solvation -73.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds