Wall clock time and date at job start Wed Apr 15 2020 11:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 117.00240 * 2 1 4 4 O 1.20828 * 119.99559 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99998 * 179.97438 * 3 2 1 6 6 H 1.08999 * 110.59720 * 303.00590 * 5 3 2 7 7 C 1.54940 * 110.66819 * 66.19235 * 5 3 2 8 8 C 1.54587 * 102.92326 * 155.84651 * 7 5 3 9 9 F 1.39900 * 110.30952 * 96.95624 * 8 7 5 10 10 F 1.39898 * 110.31378 * 219.12662 * 8 7 5 11 11 C 1.53993 * 105.14218 * 338.04312 * 8 7 5 12 12 N 1.47908 * 107.05641 * 358.77457 * 11 8 7 13 13 C 1.46899 * 111.00017 * 145.84281 * 12 11 8 14 14 C 1.52997 * 109.47254 * 52.60365 * 13 12 11 15 15 H 1.08998 * 109.47533 * 59.99633 * 14 13 12 16 16 O 1.42905 * 109.47264 * 299.99921 * 14 13 12 17 17 C 1.50697 * 109.47466 * 179.97438 * 14 13 12 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 14 13 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 14 22 22 H 1.48499 * 109.46616 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47104 * 119.99966 * 21 19 17 24 24 H 1.48489 * 109.47200 * 240.00246 * 21 19 17 25 25 H 1.08998 * 109.47645 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47228 * 300.00723 * 1 2 3 27 27 H 1.09005 * 109.47197 * 60.00196 * 1 2 3 28 28 H 1.09000 * 110.72435 * 274.21219 * 7 5 3 29 29 H 1.09006 * 110.72271 * 37.31264 * 7 5 3 30 30 H 1.09000 * 109.92230 * 239.41965 * 11 8 7 31 31 H 1.09003 * 109.91930 * 118.12616 * 11 8 7 32 32 H 1.09002 * 109.47043 * 172.60436 * 13 12 11 33 33 H 1.09001 * 109.47354 * 292.60498 * 13 12 11 34 34 H 0.96696 * 114.00036 * 299.99911 * 16 14 13 35 35 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9780 0.7399 0.8565 7 6 4.1436 0.7187 -1.3254 8 6 5.5171 1.4208 -1.4259 9 9 6.5275 0.5826 -0.9424 10 9 5.7802 1.7859 -2.7505 11 6 5.3937 2.6746 -0.5404 12 7 4.0171 2.6900 0.0004 13 6 3.9910 3.2510 1.3578 14 6 4.6897 4.6121 1.3608 15 1 4.1731 5.2872 0.6786 16 8 6.0452 4.4526 0.9373 17 6 4.6624 5.1878 2.7531 18 1 4.1939 4.6378 3.5558 19 6 5.2364 6.4164 3.0026 20 7 5.8073 7.0860 2.0251 21 14 5.2019 7.1304 4.7284 22 1 4.5054 6.1877 5.6401 23 1 6.5926 7.3422 5.2043 24 1 4.4810 8.4285 4.7127 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 4.2664 -0.3629 -1.2691 29 1 3.5063 0.9898 -2.1672 30 1 5.5681 3.5697 -1.1375 31 1 6.1132 2.6244 0.2769 32 1 2.9571 3.3726 1.6809 33 1 4.5078 2.5759 2.0400 34 1 6.5662 3.8633 1.4996 35 1 6.2115 7.9502 2.2007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335008694.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:54 Heat of formation + Delta-G solvation = -237.055904 kcal Electronic energy + Delta-G solvation = -23084.820669 eV Core-core repulsion = 19139.548709 eV Total energy + Delta-G solvation = -3945.271960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.111 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.97465 -48.08912 -41.73988 -39.88220 -37.58463 -37.14745 -34.32125 -32.91033 -30.90063 -29.58904 -28.37536 -26.48958 -24.43211 -23.08568 -22.06271 -21.57209 -19.21683 -19.14336 -18.33450 -18.10727 -17.66117 -17.15382 -16.90653 -16.68132 -16.40600 -16.04843 -15.55237 -15.32466 -14.93962 -14.78087 -14.47533 -14.40709 -14.23226 -13.77479 -13.61001 -13.40337 -13.24933 -12.95070 -12.93117 -12.85669 -12.63880 -12.44642 -12.09268 -11.79425 -11.77453 -11.44643 -11.08008 -10.73636 -10.04504 -9.60552 -8.15459 -6.41213 1.07763 1.39451 1.41258 1.47468 1.52950 2.35178 2.45676 2.78049 2.91406 3.06791 3.11352 3.43324 3.79151 3.87096 3.93783 4.12311 4.28673 4.33755 4.34494 4.35033 4.50076 4.60494 4.72790 4.77493 4.84668 5.06036 5.28139 5.48436 5.60595 5.62480 5.83655 6.07430 6.70191 6.72562 7.30037 7.47850 8.89181 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016923 B = 0.005871 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.157841 B = 4768.089925 C = 6031.991992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.475 3.525 4 O -0.515 6.515 5 C 0.067 3.933 6 H 0.120 0.880 7 C -0.132 4.132 8 C 0.274 3.726 9 F -0.192 7.192 10 F -0.198 7.198 11 C 0.023 3.977 12 N -0.507 5.507 13 C 0.042 3.958 14 C 0.236 3.764 15 H 0.021 0.979 16 O -0.567 6.567 17 C -0.585 4.585 18 H 0.060 0.940 19 C 0.028 3.972 20 N -0.897 5.897 21 Si 0.960 3.040 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.282 1.282 25 H 0.139 0.861 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.144 0.856 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.355 0.645 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.219 -17.848 -4.256 19.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.317 3.683 4 O -0.402 6.402 5 C -0.042 4.042 6 H 0.138 0.862 7 C -0.170 4.170 8 C 0.237 3.763 9 F -0.173 7.173 10 F -0.179 7.179 11 C -0.105 4.105 12 N -0.232 5.232 13 C -0.086 4.086 14 C 0.178 3.822 15 H 0.039 0.961 16 O -0.373 6.373 17 C -0.624 4.624 18 H 0.079 0.921 19 C -0.175 4.175 20 N -0.534 5.534 21 Si 0.785 3.215 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.208 1.208 25 H 0.157 0.843 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.162 0.838 29 H 0.131 0.869 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.202 0.798 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.892 -16.668 -5.117 18.404 hybrid contribution 0.522 0.288 1.618 1.724 sum -5.370 -16.380 -3.499 17.589 Atomic orbital electron populations 1.23580 0.74526 1.05913 1.02434 1.86467 1.25049 1.31755 1.83882 1.23278 0.91227 0.81599 0.72209 1.90711 1.67132 1.37591 1.44735 1.22423 0.88814 0.91658 1.01353 0.86231 1.23426 0.92546 1.03733 0.97273 1.21955 0.86551 0.90073 0.77699 1.93026 1.63646 1.72915 1.87716 1.93007 1.95126 1.92344 1.37400 1.24004 0.91239 0.95943 0.99341 1.64490 1.20247 1.14665 1.23831 1.22883 1.01282 0.97819 0.86598 1.19101 0.79776 0.89826 0.93481 0.96140 1.86655 1.24878 1.71069 1.54656 1.21964 1.39543 1.04919 0.95926 0.92142 1.25865 0.93855 0.96935 1.00810 1.70220 1.36036 1.13677 1.33446 0.85500 0.77921 0.78244 0.79838 1.18735 1.20295 1.20802 0.84336 0.92403 0.92011 0.83753 0.86945 0.88883 0.88665 0.91386 0.93225 0.79841 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.36 -7.72 10.56 -51.39 -0.54 -8.26 16 3 C 0.48 13.42 7.20 71.23 0.51 13.93 16 4 O -0.51 -18.84 15.58 21.96 0.34 -18.50 16 5 C 0.07 1.76 2.83 44.52 0.13 1.88 16 6 H 0.12 2.64 7.85 -2.39 -0.02 2.62 16 7 C -0.13 -2.82 6.08 31.80 0.19 -2.63 16 8 C 0.27 7.41 2.64 31.47 0.08 7.49 16 9 F -0.19 -5.06 17.08 44.97 0.77 -4.29 16 10 F -0.20 -5.87 17.08 44.97 0.77 -5.10 16 11 C 0.02 0.76 4.56 86.44 0.39 1.15 16 12 N -0.51 -17.76 4.68 -862.56 -4.04 -21.80 16 13 C 0.04 1.68 4.59 86.30 0.40 2.07 16 14 C 0.24 11.82 2.94 29.85 0.09 11.91 16 15 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 16 O -0.57 -27.18 9.25 -148.98 -1.38 -28.56 16 17 C -0.59 -31.57 8.76 25.60 0.22 -31.35 16 18 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 19 C 0.03 1.56 5.40 84.65 0.46 2.02 16 20 N -0.90 -53.17 12.84 21.45 0.28 -52.90 16 21 Si 0.96 42.98 29.54 68.60 2.03 45.00 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 27 H 0.06 1.03 8.13 -2.38 -0.02 1.02 16 28 H 0.14 2.08 8.12 -2.39 -0.02 2.06 16 29 H 0.11 2.37 8.03 -2.38 -0.02 2.35 16 30 H 0.09 3.63 7.56 -2.39 -0.02 3.62 16 31 H 0.10 3.15 5.35 -2.39 -0.01 3.13 16 32 H 0.07 2.92 7.58 -2.39 -0.02 2.90 16 33 H 0.05 1.78 7.89 -2.39 -0.02 1.76 16 34 H 0.36 14.77 8.06 -74.06 -0.60 14.18 16 35 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -68.49 302.51 2.42 -66.07 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.53 Total: 20.20 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 3.67 Total: 8.13 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -3.76 Total: -74.70 kcal Atomic # 8 Polarization: -53.74 SS G_CDS: -1.58 Total: -55.32 kcal Atomic # 9 Polarization: -10.92 SS G_CDS: 1.54 Total: -9.39 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -68.49 2.42 -66.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335008694.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.984 kcal (2) G-P(sol) polarization free energy of solvation -68.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds