Wall clock time and date at job start Wed Apr 15 2020 11:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76199 * 102.99738 * 2 1 4 4 C 1.38996 * 120.08329 * 0.02562 * 3 2 1 5 5 C 1.38063 * 119.92146 * 179.97438 * 4 3 2 6 6 C 1.38332 * 120.07857 * 0.02562 * 5 4 3 7 7 C 1.38285 * 120.15821 * 359.74535 * 6 5 4 8 8 C 1.38101 * 120.07984 * 0.50655 * 7 6 5 9 9 C 1.50704 * 120.03780 * 179.77232 * 8 7 6 10 10 N 1.46903 * 109.47018 * 259.72403 * 9 8 7 11 11 C 1.47957 * 111.00079 * 170.00106 * 10 9 8 12 12 C 1.53937 * 86.18208 * 222.41605 * 11 10 9 13 13 O 1.42896 * 113.73148 * 269.25755 * 12 11 10 14 14 C 1.50694 * 113.73443 * 138.07827 * 12 11 10 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.47958 * 111.00224 * 70.63784 * 10 9 8 23 23 H 1.09000 * 109.46748 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47170 * 300.00043 * 1 2 3 25 25 H 1.09003 * 109.46718 * 59.99998 * 1 2 3 26 26 H 1.07994 * 120.03962 * 359.95959 * 4 3 2 27 27 H 1.07994 * 119.96339 * 179.97438 * 5 4 3 28 28 H 1.07996 * 119.91844 * 180.02562 * 6 5 4 29 29 H 1.08001 * 119.95452 * 180.25342 * 7 6 5 30 30 H 1.08997 * 109.47128 * 139.72447 * 9 8 7 31 31 H 1.08999 * 109.47288 * 19.71705 * 9 8 7 32 32 H 1.08999 * 113.76060 * 108.09601 * 11 10 9 33 33 H 1.09001 * 113.85944 * 336.74419 * 11 10 9 34 34 H 0.96709 * 114.00030 * 178.09403 * 13 12 11 35 35 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 36 36 H 1.09003 * 113.76031 * 23.26533 * 22 10 9 37 37 H 1.08999 * 113.76380 * 251.90073 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1951 2.6662 0.0005 5 6 1.5094 4.0106 0.0011 6 6 2.8329 4.4132 0.0005 7 6 3.8455 3.4715 0.0048 8 6 3.5386 2.1250 -0.0010 9 6 4.6429 1.0995 -0.0015 10 7 4.8375 0.5902 -1.3657 11 6 6.0621 -0.2355 -1.4537 12 6 6.3301 0.4876 -2.7859 13 8 5.7747 -0.1765 -3.9227 14 6 7.7710 0.8826 -2.9824 15 1 8.5028 0.6517 -2.2225 16 6 8.1553 1.5390 -4.1325 17 7 7.2643 1.8198 -5.0583 18 14 9.9413 2.0293 -4.3758 19 1 10.0923 2.7161 -5.6838 20 1 10.3560 2.9462 -3.2839 21 1 10.7954 0.8147 -4.3534 22 6 5.4465 1.6213 -2.2348 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.1617 2.3527 0.0003 27 1 0.7212 4.7488 0.0011 28 1 3.0758 5.4655 0.0014 29 1 4.8776 3.7894 0.0085 30 1 4.3738 0.2754 0.6590 31 1 5.5665 1.5599 0.3495 32 1 5.8656 -1.3019 -1.5646 33 1 6.7978 -0.0171 -0.6797 34 1 5.9157 0.2894 -4.7583 35 1 7.5345 2.2819 -5.8672 36 1 6.0011 2.3844 -1.6886 37 1 4.7582 2.0385 -2.9698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001459990135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:57 Heat of formation + Delta-G solvation = 13.644012 kcal Electronic energy + Delta-G solvation = -19619.420341 eV Core-core repulsion = 16682.001947 eV Total energy + Delta-G solvation = -2937.418395 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.50555 -38.30909 -34.39445 -32.09676 -31.82949 -31.14256 -28.78002 -27.92100 -25.64358 -24.97702 -22.81950 -22.49798 -20.71569 -18.52436 -17.43182 -17.11668 -15.90159 -15.41153 -15.08162 -14.91329 -14.51063 -14.12951 -13.99306 -13.72809 -13.70496 -13.33571 -12.59943 -12.48742 -12.32043 -12.08943 -11.90414 -11.42410 -11.29523 -11.13358 -10.91263 -10.70536 -10.58215 -10.34044 -10.00459 -9.80573 -9.53794 -9.32762 -8.70449 -8.54711 -8.13459 -7.72921 -7.11214 -6.22222 -4.32221 1.38779 1.49704 1.72589 2.63100 3.22521 3.28066 3.30456 3.82860 4.28099 4.86413 4.93919 4.97957 5.02971 5.04987 5.06130 5.20979 5.43415 5.54291 5.64673 5.72764 5.81133 5.98999 6.04410 6.13625 6.18432 6.36946 6.40374 6.47563 6.59100 6.72789 6.76653 7.04818 7.11644 7.27378 7.41090 7.80249 8.02724 8.06897 8.69105 9.37577 9.71844 10.83336 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.023868 B = 0.004985 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.837309 B = 5615.415538 C = 6216.808189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 S -0.076 6.076 3 C -0.069 4.069 4 C -0.140 4.140 5 C -0.109 4.109 6 C -0.127 4.127 7 C -0.094 4.094 8 C -0.048 4.048 9 C 0.053 3.947 10 N -0.462 5.462 11 C 0.008 3.992 12 C 0.246 3.754 13 O -0.571 6.571 14 C -0.537 4.537 15 H 0.064 0.936 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.902 3.098 19 H -0.285 1.285 20 H -0.276 1.276 21 H -0.274 1.274 22 C -0.009 4.009 23 H 0.104 0.896 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.388 0.612 35 H 0.271 0.729 36 H 0.056 0.944 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.007 2.597 10.348 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.329 4.329 2 S 0.167 5.833 3 C -0.183 4.183 4 C -0.165 4.165 5 C -0.129 4.129 6 C -0.148 4.148 7 C -0.115 4.115 8 C -0.054 4.054 9 C -0.076 4.076 10 N -0.184 5.184 11 C -0.121 4.121 12 C 0.204 3.796 13 O -0.383 6.383 14 C -0.576 4.576 15 H 0.082 0.918 16 C -0.130 4.130 17 N -0.538 5.538 18 Si 0.729 3.271 19 H -0.210 1.210 20 H -0.201 1.201 21 H -0.200 1.200 22 C -0.138 4.138 23 H 0.122 0.878 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.137 0.863 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.243 0.757 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.223 0.864 10.453 15.361 hybrid contribution 0.924 2.453 -0.269 2.636 sum -10.298 3.317 10.184 14.858 Atomic orbital electron populations 1.23742 0.97579 1.06604 1.05016 1.85934 1.03072 1.02603 1.91673 1.21620 0.95886 0.96857 1.03891 1.21068 0.97822 0.93275 1.04293 1.20937 0.96480 0.95122 1.00331 1.21089 0.92760 0.99348 1.01588 1.21067 0.99563 0.91999 0.98834 1.19471 0.92450 0.94318 0.99136 1.21622 0.94914 0.95797 0.95229 1.68703 1.32056 1.12839 1.04817 1.24156 0.90216 0.99096 0.98592 1.19721 0.90029 0.86565 0.83289 1.86046 1.80420 1.52599 1.19197 1.21629 0.94139 1.37444 1.04356 0.91793 1.25046 0.98105 0.94432 0.95444 1.69350 1.33895 1.41579 1.08987 0.86493 0.84332 0.78782 0.77454 1.21043 1.20123 1.19969 1.24662 0.97071 0.96089 0.95996 0.87781 0.90447 0.90048 0.86277 0.86234 0.86100 0.85727 0.90366 0.93607 0.90585 0.91859 0.75729 0.91887 0.92537 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.15 101.05 0.92 -0.73 16 2 S -0.08 -1.14 20.99 -107.50 -2.26 -3.40 16 3 C -0.07 -1.10 6.11 -39.04 -0.24 -1.34 16 4 C -0.14 -1.92 9.36 -39.36 -0.37 -2.29 16 5 C -0.11 -1.38 10.04 -39.61 -0.40 -1.78 16 6 C -0.13 -1.71 10.04 -39.53 -0.40 -2.10 16 7 C -0.09 -1.46 9.48 -39.61 -0.38 -1.84 16 8 C -0.05 -0.81 4.98 -104.41 -0.52 -1.33 16 9 C 0.05 0.96 4.31 -4.97 -0.02 0.93 16 10 N -0.46 -9.88 6.25 -239.69 -1.50 -11.38 16 11 C 0.01 0.18 7.36 -2.77 -0.02 0.16 16 12 C 0.25 6.31 1.44 -90.84 -0.13 6.18 16 13 O -0.57 -15.81 13.48 -35.23 -0.47 -16.29 16 14 C -0.54 -14.44 8.62 -34.44 -0.30 -14.74 16 15 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 16 C 0.07 1.90 5.40 -17.82 -0.10 1.81 16 17 N -0.90 -24.34 11.09 55.43 0.61 -23.73 16 18 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 C -0.01 -0.21 6.71 -2.77 -0.02 -0.23 16 23 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 24 H 0.08 0.69 7.75 -51.92 -0.40 0.28 16 25 H 0.08 0.82 7.75 -51.92 -0.40 0.41 16 26 H 0.12 1.34 5.88 -52.49 -0.31 1.04 16 27 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.12 1.84 8.03 -52.49 -0.42 1.41 16 30 H 0.08 1.35 7.25 -51.93 -0.38 0.98 16 31 H 0.05 0.80 7.55 -51.93 -0.39 0.41 16 32 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.06 1.31 7.75 -51.93 -0.40 0.91 16 34 H 0.39 10.90 6.46 45.56 0.29 11.19 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.06 1.31 7.73 -51.93 -0.40 0.91 16 37 H 0.07 1.76 8.14 -51.93 -0.42 1.33 16 LS Contribution 318.51 15.07 4.80 4.80 Total: -1.00 -28.99 318.51 -10.27 -39.26 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -4.47 Total: 12.57 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -1.96 Total: -17.30 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: -0.88 Total: -35.11 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.47 Total: -16.29 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.26 Total: -3.40 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.99 -10.27 -39.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459990135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.900 kcal (2) G-P(sol) polarization free energy of solvation -28.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds