Wall clock time and date at job start Wed Apr 15 2020 11:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76199 * 102.99738 * 2 1 4 4 C 1.38996 * 120.08329 * 0.02562 * 3 2 1 5 5 C 1.38063 * 119.92146 * 179.97438 * 4 3 2 6 6 C 1.38332 * 120.07857 * 0.02562 * 5 4 3 7 7 C 1.38285 * 120.15821 * 359.74535 * 6 5 4 8 8 C 1.38101 * 120.07984 * 0.50655 * 7 6 5 9 9 C 1.50704 * 120.03780 * 179.77232 * 8 7 6 10 10 N 1.46903 * 109.47018 * 259.72403 * 9 8 7 11 11 C 1.47957 * 111.00079 * 170.00106 * 10 9 8 12 12 C 1.53937 * 86.18208 * 222.41605 * 11 10 9 13 13 O 1.42896 * 113.73148 * 269.25755 * 12 11 10 14 14 C 1.50694 * 113.73443 * 138.07827 * 12 11 10 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.47958 * 111.00224 * 70.63784 * 10 9 8 23 23 H 1.09000 * 109.46748 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47170 * 300.00043 * 1 2 3 25 25 H 1.09003 * 109.46718 * 59.99998 * 1 2 3 26 26 H 1.07994 * 120.03962 * 359.95959 * 4 3 2 27 27 H 1.07994 * 119.96339 * 179.97438 * 5 4 3 28 28 H 1.07996 * 119.91844 * 180.02562 * 6 5 4 29 29 H 1.08001 * 119.95452 * 180.25342 * 7 6 5 30 30 H 1.08997 * 109.47128 * 139.72447 * 9 8 7 31 31 H 1.08999 * 109.47288 * 19.71705 * 9 8 7 32 32 H 1.08999 * 113.76060 * 108.09601 * 11 10 9 33 33 H 1.09001 * 113.85944 * 336.74419 * 11 10 9 34 34 H 0.96709 * 114.00030 * 178.09403 * 13 12 11 35 35 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 36 36 H 1.09003 * 113.76031 * 23.26533 * 22 10 9 37 37 H 1.08999 * 113.76380 * 251.90073 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1951 2.6662 0.0005 5 6 1.5094 4.0106 0.0011 6 6 2.8329 4.4132 0.0005 7 6 3.8455 3.4715 0.0048 8 6 3.5386 2.1250 -0.0010 9 6 4.6429 1.0995 -0.0015 10 7 4.8375 0.5902 -1.3657 11 6 6.0621 -0.2355 -1.4537 12 6 6.3301 0.4876 -2.7859 13 8 5.7747 -0.1765 -3.9227 14 6 7.7710 0.8826 -2.9824 15 1 8.5028 0.6517 -2.2225 16 6 8.1553 1.5390 -4.1325 17 7 7.2643 1.8198 -5.0583 18 14 9.9413 2.0293 -4.3758 19 1 10.0923 2.7161 -5.6838 20 1 10.3560 2.9462 -3.2839 21 1 10.7954 0.8147 -4.3534 22 6 5.4465 1.6213 -2.2348 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.1617 2.3527 0.0003 27 1 0.7212 4.7488 0.0011 28 1 3.0758 5.4655 0.0014 29 1 4.8776 3.7894 0.0085 30 1 4.3738 0.2754 0.6590 31 1 5.5665 1.5599 0.3495 32 1 5.8656 -1.3019 -1.5646 33 1 6.7978 -0.0171 -0.6797 34 1 5.9157 0.2894 -4.7583 35 1 7.5345 2.2819 -5.8672 36 1 6.0011 2.3844 -1.6886 37 1 4.7582 2.0385 -2.9698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459990135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:56 Heat of formation + Delta-G solvation = -6.138976 kcal Electronic energy + Delta-G solvation = -19620.278196 eV Core-core repulsion = 16682.001947 eV Total energy + Delta-G solvation = -2938.276250 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.04466 -39.70453 -36.29332 -34.10650 -33.27095 -32.20023 -29.67536 -29.54207 -27.41533 -26.81832 -24.30216 -23.69045 -22.03654 -20.44584 -19.24066 -18.41247 -17.17776 -16.99564 -16.83971 -16.50863 -15.89258 -15.64763 -15.50909 -14.92202 -14.71322 -14.62115 -14.06747 -13.92796 -13.63547 -13.52973 -13.30607 -13.27838 -12.89301 -12.72407 -12.54562 -12.28060 -12.16232 -11.98559 -11.89672 -11.21655 -10.91424 -10.64333 -10.61321 -10.13389 -9.78591 -9.51426 -8.25540 -8.22965 -6.41570 0.28618 0.38630 0.69558 1.42747 1.44433 1.52524 1.63695 2.37691 2.70356 2.97618 3.26761 3.73136 3.84817 4.04493 4.17023 4.23415 4.28784 4.29466 4.31102 4.42788 4.49385 4.53215 4.59855 4.69169 4.83320 4.88224 4.91168 5.05809 5.14633 5.31516 5.40959 5.43205 5.52257 5.63810 5.75754 5.99161 6.00370 6.32652 6.63422 7.31335 7.55270 8.81419 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.023868 B = 0.004985 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.837309 B = 5615.415538 C = 6216.808189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.139 6.139 3 C -0.080 4.080 4 C -0.144 4.144 5 C -0.103 4.103 6 C -0.130 4.130 7 C -0.110 4.110 8 C -0.078 4.078 9 C 0.059 3.941 10 N -0.462 5.462 11 C 0.016 3.984 12 C 0.220 3.780 13 O -0.585 6.585 14 C -0.561 4.561 15 H 0.065 0.935 16 C 0.028 3.972 17 N -0.919 5.919 18 Si 0.967 3.033 19 H -0.280 1.280 20 H -0.269 1.269 21 H -0.272 1.272 22 C 0.010 3.990 23 H 0.121 0.879 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.145 0.855 27 H 0.156 0.844 28 H 0.147 0.853 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.382 0.618 35 H 0.274 0.726 36 H 0.057 0.943 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.004 3.795 11.245 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.104 5.896 3 C -0.194 4.194 4 C -0.168 4.168 5 C -0.123 4.123 6 C -0.150 4.150 7 C -0.131 4.131 8 C -0.084 4.084 9 C -0.069 4.069 10 N -0.185 5.185 11 C -0.113 4.113 12 C 0.179 3.821 13 O -0.396 6.396 14 C -0.599 4.599 15 H 0.083 0.917 16 C -0.172 4.172 17 N -0.560 5.560 18 Si 0.792 3.208 19 H -0.206 1.206 20 H -0.194 1.194 21 H -0.197 1.197 22 C -0.120 4.120 23 H 0.139 0.861 24 H 0.115 0.885 25 H 0.105 0.895 26 H 0.162 0.838 27 H 0.173 0.827 28 H 0.165 0.835 29 H 0.141 0.859 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.235 0.765 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.227 2.057 11.370 16.823 hybrid contribution 1.112 2.087 -0.521 2.421 sum -11.115 4.144 10.849 16.075 Atomic orbital electron populations 1.23791 0.92972 1.08162 1.06175 1.86037 1.08276 1.03379 1.91890 1.21753 0.96038 0.97263 1.04302 1.21449 0.98571 0.93409 1.03349 1.21396 0.97096 0.95515 0.98252 1.21440 0.92734 1.00292 1.00534 1.21213 1.00307 0.92044 0.99502 1.19470 0.92682 0.94545 1.01679 1.21553 0.95759 0.96527 0.93044 1.68597 1.31122 1.11881 1.06873 1.24086 0.91050 0.98928 0.97189 1.20105 0.90118 0.88178 0.83717 1.86030 1.80790 1.53192 1.19581 1.21889 0.94841 1.38160 1.04975 0.91729 1.25811 1.02122 0.94203 0.95046 1.69436 1.35591 1.41737 1.09276 0.85473 0.79317 0.78456 0.77556 1.20558 1.19363 1.19733 1.24314 0.96036 0.95774 0.95851 0.86053 0.88523 0.89487 0.83774 0.82660 0.83500 0.85935 0.89880 0.93474 0.90757 0.90415 0.76466 0.91669 0.92519 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.15 113.37 1.04 -1.56 16 2 S -0.14 -4.08 20.99 -56.49 -1.19 -5.27 16 3 C -0.08 -2.48 6.11 22.62 0.14 -2.34 16 4 C -0.14 -3.58 9.36 22.41 0.21 -3.37 16 5 C -0.10 -2.29 10.04 22.25 0.22 -2.07 16 6 C -0.13 -3.20 10.04 22.30 0.22 -2.97 16 7 C -0.11 -3.36 9.48 22.25 0.21 -3.15 16 8 C -0.08 -2.63 4.98 -19.72 -0.10 -2.73 16 9 C 0.06 2.17 4.31 85.56 0.37 2.54 16 10 N -0.46 -20.15 6.25 -915.44 -5.72 -25.87 16 11 C 0.02 0.72 7.36 86.41 0.64 1.36 16 12 C 0.22 11.54 1.44 -10.89 -0.02 11.52 16 13 O -0.58 -33.36 13.48 -148.98 -2.01 -35.37 16 14 C -0.56 -30.45 8.62 25.60 0.22 -30.23 16 15 H 0.06 3.40 7.81 -2.91 -0.02 3.38 16 16 C 0.03 1.49 5.40 84.66 0.46 1.94 16 17 N -0.92 -50.50 11.09 21.45 0.24 -50.27 16 18 Si 0.97 41.91 29.54 68.60 2.03 43.94 16 19 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 C 0.01 0.48 6.71 86.41 0.58 1.06 16 23 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.10 1.40 7.75 -2.39 -0.02 1.38 16 25 H 0.09 1.51 7.75 -2.39 -0.02 1.49 16 26 H 0.14 2.75 5.88 -2.91 -0.02 2.73 16 27 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 28 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 29 H 0.12 3.63 8.03 -2.91 -0.02 3.61 16 30 H 0.08 2.92 7.25 -2.39 -0.02 2.90 16 31 H 0.05 1.68 7.55 -2.39 -0.02 1.66 16 32 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 33 H 0.08 3.23 7.75 -2.39 -0.02 3.22 16 34 H 0.38 22.21 6.46 -74.05 -0.48 21.73 16 35 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 36 H 0.06 2.69 7.73 -2.39 -0.02 2.67 16 37 H 0.04 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -62.98 318.51 -1.87 -64.84 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: 0.59 Total: 38.00 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: 4.19 Total: -30.00 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -5.49 Total: -76.14 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -2.01 Total: -35.37 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: -4.08 SS G_CDS: -1.19 Total: -5.27 kcal Total: -62.98 -1.87 -64.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459990135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.706 kcal (2) G-P(sol) polarization free energy of solvation -62.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds