Wall clock time and date at job start Wed Apr 15 2020 11:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81400 * 103.00265 * 2 1 4 4 C 1.52991 * 109.46927 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46962 * 180.02562 * 4 3 2 6 6 C 1.34779 * 120.00328 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99419 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00080 * 180.02562 * 6 5 4 9 9 H 1.09001 * 109.47295 * 299.99387 * 8 6 5 10 10 C 1.50696 * 109.47530 * 59.99483 * 8 6 5 11 11 H 1.07997 * 120.00260 * 235.33651 * 10 8 6 12 12 C 1.37879 * 119.99977 * 55.33425 * 10 8 6 13 13 N 1.31516 * 119.99735 * 1.97120 * 12 10 8 14 14 Si 1.86800 * 120.00111 * 181.96775 * 12 10 8 15 15 H 1.48500 * 109.47037 * 60.00267 * 14 12 10 16 16 H 1.48499 * 109.46987 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47204 * 299.99860 * 14 12 10 18 18 C 1.50707 * 109.46942 * 179.97438 * 8 6 5 19 19 C 1.38230 * 120.00383 * 47.22241 * 18 8 6 20 20 C 1.38230 * 120.00043 * 180.02562 * 19 18 8 21 21 C 1.38229 * 120.00376 * 359.95097 * 20 19 18 22 22 C 1.38236 * 119.99772 * 359.97438 * 21 20 19 23 23 C 1.38235 * 120.00185 * 0.06932 * 22 21 20 24 24 H 1.08996 * 109.47063 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46713 * 299.99899 * 1 2 3 26 26 H 1.09001 * 109.46791 * 59.99526 * 1 2 3 27 27 H 1.09003 * 109.46896 * 59.99551 * 3 2 1 28 28 H 1.09001 * 109.46692 * 300.00238 * 3 2 1 29 29 H 1.09006 * 109.47405 * 60.00523 * 4 3 2 30 30 H 1.09001 * 109.47667 * 299.99688 * 4 3 2 31 31 H 0.97004 * 120.00070 * 0.02562 * 5 4 3 32 32 H 0.97003 * 120.00319 * 179.97438 * 13 12 10 33 33 H 1.08002 * 119.99547 * 359.97438 * 19 18 8 34 34 H 1.08001 * 119.99875 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.00421 * 179.72884 * 21 20 19 36 36 H 1.07996 * 120.00326 * 179.97438 * 22 21 20 37 37 H 1.08001 * 120.00212 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 3.7424 1.9398 0.0006 5 7 4.0720 3.3673 0.0013 6 6 5.3609 3.7613 0.0014 7 8 6.2478 2.9341 0.0014 8 6 5.6999 5.2296 0.0026 9 1 5.2809 5.7000 -0.8870 10 6 5.1209 5.8779 1.2336 11 1 4.4634 6.7293 1.1371 12 6 5.4304 5.3842 2.4832 13 7 6.2615 4.3719 2.6028 14 14 4.6695 6.1530 4.0061 15 1 3.1907 6.0393 3.9317 16 1 5.1596 5.4446 5.2157 17 1 5.0527 7.5856 4.0815 18 6 7.1974 5.3994 0.0031 19 6 7.9760 4.6702 -0.8759 20 6 9.3496 4.8256 -0.8750 21 6 9.9445 5.7110 0.0042 22 6 9.1657 6.4414 0.8822 23 6 7.7922 6.2854 0.8819 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8032 2.2371 0.8900 28 1 1.8032 2.2371 -0.8900 29 1 4.1617 1.4701 -0.8892 30 1 4.1610 1.4703 0.8909 31 1 3.3626 4.0289 0.0016 32 1 6.4796 4.0247 3.4819 33 1 7.5112 3.9784 -1.5628 34 1 9.9579 4.2555 -1.5615 35 1 11.0180 5.8292 0.0079 36 1 9.6304 7.1329 1.5694 37 1 7.1838 6.8558 1.5682 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001587214802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:02 Heat of formation + Delta-G solvation = -17.441087 kcal Electronic energy + Delta-G solvation = -19546.073570 eV Core-core repulsion = 16607.307225 eV Total energy + Delta-G solvation = -2938.766346 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.95117 -37.45589 -34.44276 -33.59871 -30.84038 -30.06412 -29.64579 -29.01668 -27.12800 -24.06038 -22.61493 -21.23411 -20.47907 -19.25440 -16.90178 -16.13516 -15.85851 -15.35635 -15.12150 -15.01209 -14.78422 -13.99635 -13.77345 -13.65145 -13.55440 -13.13618 -12.67548 -12.32975 -12.25048 -12.13423 -11.91369 -11.61114 -11.32474 -11.17716 -10.95802 -10.78996 -10.43412 -10.07664 -10.03532 -9.65943 -9.37794 -8.71499 -8.31073 -8.03651 -7.72546 -7.66719 -7.37806 -6.13658 -4.30676 1.55348 2.51787 2.57720 2.63941 3.19161 3.27146 3.28366 4.13753 4.28435 4.47024 4.95307 4.98141 5.02750 5.03219 5.06443 5.13928 5.51316 5.55255 5.88072 5.99480 6.07574 6.12809 6.23652 6.41726 6.58552 6.70053 6.82173 6.91617 7.15494 7.23801 7.46873 7.57957 7.66374 7.68618 7.80672 8.18350 8.29003 8.58933 8.79216 9.35958 9.68442 10.86669 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.017547 B = 0.005402 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.319489 B = 5182.160128 C = 6397.387597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.253 6.253 3 C -0.095 4.095 4 C 0.145 3.855 5 N -0.735 5.735 6 C 0.551 3.449 7 O -0.545 6.545 8 C 0.058 3.942 9 H 0.057 0.943 10 C -0.542 4.542 11 H 0.066 0.934 12 C 0.074 3.926 13 N -0.841 5.841 14 Si 0.887 3.113 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.014 4.014 19 C -0.100 4.100 20 C -0.144 4.144 21 C -0.145 4.145 22 C -0.148 4.148 23 C -0.065 4.065 24 H 0.099 0.901 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.396 0.604 32 H 0.266 0.734 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.525 -1.971 -5.040 9.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.028 6.028 3 C -0.244 4.244 4 C 0.019 3.981 5 N -0.390 5.390 6 C 0.340 3.660 7 O -0.421 6.421 8 C 0.036 3.964 9 H 0.075 0.925 10 C -0.580 4.580 11 H 0.084 0.916 12 C -0.134 4.134 13 N -0.473 5.473 14 Si 0.714 3.286 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.015 4.015 19 C -0.119 4.119 20 C -0.163 4.163 21 C -0.163 4.163 22 C -0.166 4.166 23 C -0.083 4.083 24 H 0.118 0.882 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.229 0.771 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.083 -3.603 -4.890 8.597 hybrid contribution -1.580 1.468 1.263 2.499 sum -7.663 -2.136 -3.628 8.743 Atomic orbital electron populations 1.23373 0.94541 1.06321 1.04881 1.86953 1.06748 1.11052 1.98087 1.23598 1.01078 0.94372 1.05359 1.20649 0.90005 0.84913 1.02521 1.45801 1.08905 1.05284 1.78994 1.21059 0.80589 0.92251 0.72106 1.90548 1.46830 1.55372 1.49310 1.17872 0.90657 0.89729 0.98116 0.92506 1.20649 1.31631 1.16549 0.89177 0.91564 1.25062 0.94414 0.94845 0.99080 1.70061 1.30550 1.22478 1.24213 0.86728 0.79655 0.79604 0.82573 1.20177 1.21271 1.19940 1.19809 0.95804 0.93274 0.92648 1.20975 0.93288 0.98081 0.99511 1.20820 0.95058 0.99989 1.00390 1.20771 0.98150 0.99111 0.98258 1.20989 0.94744 1.01123 0.99785 1.21148 0.93043 0.97486 0.96615 0.88180 0.90511 0.90566 0.89445 0.89663 0.91881 0.91484 0.77099 0.92383 0.87502 0.88097 0.88217 0.88059 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 10.76 101.05 1.09 0.00 16 2 S -0.25 -3.28 22.38 -107.50 -2.41 -5.69 16 3 C -0.10 -1.27 6.05 37.15 0.22 -1.04 16 4 C 0.14 2.52 5.68 -4.04 -0.02 2.50 16 5 N -0.74 -14.27 5.46 -60.30 -0.33 -14.60 16 6 C 0.55 12.95 5.45 -10.99 -0.06 12.89 16 7 O -0.54 -14.59 13.95 5.55 0.08 -14.51 16 8 C 0.06 1.34 2.78 -94.08 -0.26 1.08 16 9 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 10 C -0.54 -13.03 7.12 -34.44 -0.25 -13.27 16 11 H 0.07 1.53 7.81 -52.49 -0.41 1.12 16 12 C 0.07 1.86 3.99 -17.82 -0.07 1.79 16 13 N -0.84 -22.93 10.89 55.43 0.60 -22.33 16 14 Si 0.89 19.67 29.54 -169.99 -5.02 14.65 16 15 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 18 C -0.01 -0.34 4.52 -104.62 -0.47 -0.82 16 19 C -0.10 -2.29 8.21 -39.59 -0.33 -2.62 16 20 C -0.14 -2.99 10.05 -39.59 -0.40 -3.39 16 21 C -0.14 -2.89 10.05 -39.59 -0.40 -3.29 16 22 C -0.15 -3.12 10.05 -39.58 -0.40 -3.52 16 23 C -0.07 -1.52 8.20 -39.58 -0.32 -1.85 16 24 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.08 0.64 8.14 -51.92 -0.42 0.21 16 26 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.09 1.14 8.14 -51.92 -0.42 0.71 16 28 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.40 6.80 8.36 -40.82 -0.34 6.46 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.11 2.42 7.01 -52.49 -0.37 2.05 16 34 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 36 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.13 3.08 6.02 -52.49 -0.32 2.77 16 LS Contribution 323.26 15.07 4.87 4.87 Total: -1.00 -29.66 323.26 -9.09 -38.74 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -5.22 Total: 10.40 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -1.66 Total: -11.54 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.27 Total: -36.92 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.08 Total: -14.51 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 16 Polarization: -3.28 SS G_CDS: -2.41 Total: -5.69 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.66 -9.09 -38.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587214802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.303 kcal (2) G-P(sol) polarization free energy of solvation -29.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds