Wall clock time and date at job start Wed Apr 15 2020 11:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81400 * 103.00265 * 2 1 4 4 C 1.52991 * 109.46927 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46962 * 180.02562 * 4 3 2 6 6 C 1.34779 * 120.00328 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99419 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00080 * 180.02562 * 6 5 4 9 9 H 1.09001 * 109.47295 * 299.99387 * 8 6 5 10 10 C 1.50696 * 109.47530 * 59.99483 * 8 6 5 11 11 H 1.07997 * 120.00260 * 235.33651 * 10 8 6 12 12 C 1.37879 * 119.99977 * 55.33425 * 10 8 6 13 13 N 1.31516 * 119.99735 * 1.97120 * 12 10 8 14 14 Si 1.86800 * 120.00111 * 181.96775 * 12 10 8 15 15 H 1.48500 * 109.47037 * 60.00267 * 14 12 10 16 16 H 1.48499 * 109.46987 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47204 * 299.99860 * 14 12 10 18 18 C 1.50707 * 109.46942 * 179.97438 * 8 6 5 19 19 C 1.38230 * 120.00383 * 47.22241 * 18 8 6 20 20 C 1.38230 * 120.00043 * 180.02562 * 19 18 8 21 21 C 1.38229 * 120.00376 * 359.95097 * 20 19 18 22 22 C 1.38236 * 119.99772 * 359.97438 * 21 20 19 23 23 C 1.38235 * 120.00185 * 0.06932 * 22 21 20 24 24 H 1.08996 * 109.47063 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46713 * 299.99899 * 1 2 3 26 26 H 1.09001 * 109.46791 * 59.99526 * 1 2 3 27 27 H 1.09003 * 109.46896 * 59.99551 * 3 2 1 28 28 H 1.09001 * 109.46692 * 300.00238 * 3 2 1 29 29 H 1.09006 * 109.47405 * 60.00523 * 4 3 2 30 30 H 1.09001 * 109.47667 * 299.99688 * 4 3 2 31 31 H 0.97004 * 120.00070 * 0.02562 * 5 4 3 32 32 H 0.97003 * 120.00319 * 179.97438 * 13 12 10 33 33 H 1.08002 * 119.99547 * 359.97438 * 19 18 8 34 34 H 1.08001 * 119.99875 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.00421 * 179.72884 * 21 20 19 36 36 H 1.07996 * 120.00326 * 179.97438 * 22 21 20 37 37 H 1.08001 * 120.00212 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 3.7424 1.9398 0.0006 5 7 4.0720 3.3673 0.0013 6 6 5.3609 3.7613 0.0014 7 8 6.2478 2.9341 0.0014 8 6 5.6999 5.2296 0.0026 9 1 5.2809 5.7000 -0.8870 10 6 5.1209 5.8779 1.2336 11 1 4.4634 6.7293 1.1371 12 6 5.4304 5.3842 2.4832 13 7 6.2615 4.3719 2.6028 14 14 4.6695 6.1530 4.0061 15 1 3.1907 6.0393 3.9317 16 1 5.1596 5.4446 5.2157 17 1 5.0527 7.5856 4.0815 18 6 7.1974 5.3994 0.0031 19 6 7.9760 4.6702 -0.8759 20 6 9.3496 4.8256 -0.8750 21 6 9.9445 5.7110 0.0042 22 6 9.1657 6.4414 0.8822 23 6 7.7922 6.2854 0.8819 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8032 2.2371 0.8900 28 1 1.8032 2.2371 -0.8900 29 1 4.1617 1.4701 -0.8892 30 1 4.1610 1.4703 0.8909 31 1 3.3626 4.0289 0.0016 32 1 6.4796 4.0247 3.4819 33 1 7.5112 3.9784 -1.5628 34 1 9.9579 4.2555 -1.5615 35 1 11.0180 5.8292 0.0079 36 1 9.6304 7.1329 1.5694 37 1 7.1838 6.8558 1.5682 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001587214802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:01 Heat of formation + Delta-G solvation = -34.551943 kcal Electronic energy + Delta-G solvation = -19546.815553 eV Core-core repulsion = 16607.307225 eV Total energy + Delta-G solvation = -2939.508328 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.71693 -39.14787 -36.03319 -35.47378 -32.66826 -31.48873 -31.33085 -29.77708 -28.84562 -25.87731 -24.05125 -22.93286 -22.15853 -21.01889 -18.69945 -17.61623 -17.26959 -16.97280 -16.69748 -16.54113 -16.41854 -15.61204 -15.33288 -14.93693 -14.58109 -14.41273 -14.20890 -13.93860 -13.82315 -13.73371 -13.39742 -13.02207 -12.80153 -12.72386 -12.66695 -12.54349 -12.25705 -11.77561 -11.40662 -11.18063 -11.02636 -10.62861 -10.17593 -9.72326 -9.37006 -9.09018 -8.74533 -8.06099 -6.26630 0.56677 0.89345 0.94562 1.43375 1.46321 1.52121 1.62156 2.32055 2.46420 2.85961 3.21059 3.37392 3.73967 3.89467 4.34555 4.34876 4.35853 4.36807 4.38785 4.51179 4.63078 4.72745 4.75623 4.88772 4.91650 5.01982 5.10771 5.18095 5.46685 5.55610 5.70842 5.85195 5.90818 5.96295 5.99461 6.43546 6.54187 6.76441 7.06507 7.42697 7.90814 8.92549 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.017547 B = 0.005402 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.319489 B = 5182.160128 C = 6397.387597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.305 6.305 3 C -0.078 4.078 4 C 0.151 3.849 5 N -0.724 5.724 6 C 0.548 3.452 7 O -0.584 6.584 8 C 0.048 3.952 9 H 0.072 0.928 10 C -0.534 4.534 11 H 0.075 0.925 12 C 0.039 3.961 13 N -0.875 5.875 14 Si 0.941 3.059 15 H -0.265 1.265 16 H -0.300 1.300 17 H -0.268 1.268 18 C -0.036 4.036 19 C -0.119 4.119 20 C -0.147 4.147 21 C -0.142 4.142 22 C -0.152 4.152 23 C -0.087 4.087 24 H 0.115 0.885 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.408 0.592 32 H 0.255 0.745 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.138 0.862 36 H 0.126 0.874 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.508 -1.251 -5.328 10.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 S -0.081 6.081 3 C -0.226 4.226 4 C 0.025 3.975 5 N -0.378 5.378 6 C 0.337 3.663 7 O -0.463 6.463 8 C 0.026 3.974 9 H 0.090 0.910 10 C -0.572 4.572 11 H 0.093 0.907 12 C -0.166 4.166 13 N -0.510 5.510 14 Si 0.767 3.233 15 H -0.190 1.190 16 H -0.227 1.227 17 H -0.193 1.193 18 C -0.037 4.037 19 C -0.137 4.137 20 C -0.165 4.165 21 C -0.160 4.160 22 C -0.170 4.170 23 C -0.105 4.105 24 H 0.134 0.866 25 H 0.104 0.896 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.127 0.873 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.243 0.757 32 H 0.064 0.936 33 H 0.117 0.883 34 H 0.147 0.853 35 H 0.156 0.844 36 H 0.144 0.856 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.126 -2.852 -5.194 9.268 hybrid contribution -1.288 1.231 1.290 2.199 sum -8.414 -1.621 -3.904 9.416 Atomic orbital electron populations 1.23455 0.90054 1.07768 1.06152 1.87167 1.11656 1.10996 1.98252 1.23386 0.97619 0.94860 1.06761 1.20583 0.93097 0.83216 1.00558 1.45661 1.08084 1.06601 1.77479 1.21123 0.81368 0.92106 0.71681 1.90515 1.48269 1.56245 1.51320 1.18008 0.91028 0.89805 0.98528 0.91031 1.20877 1.30754 1.16166 0.89374 0.90716 1.25609 0.94600 0.94987 1.01394 1.70243 1.32636 1.24374 1.23710 0.85868 0.79368 0.78841 0.79208 1.19011 1.22682 1.19269 1.19943 0.96202 0.94064 0.93478 1.21046 0.94522 0.98356 0.99809 1.21195 0.94465 1.00044 1.00815 1.21178 1.00026 0.97797 0.96951 1.21321 0.93990 1.01469 1.00259 1.21138 0.94270 0.98168 0.96929 0.86617 0.89564 0.88934 0.88887 0.87281 0.92573 0.94777 0.75703 0.93583 0.88308 0.85303 0.84429 0.85561 0.86931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 10.76 113.37 1.22 -0.37 16 2 S -0.30 -7.62 22.38 -56.49 -1.26 -8.88 16 3 C -0.08 -1.98 6.05 71.98 0.44 -1.54 16 4 C 0.15 5.34 5.68 86.38 0.49 5.83 16 5 N -0.72 -28.24 5.46 -463.06 -2.53 -30.77 16 6 C 0.55 26.28 5.45 87.66 0.48 26.75 16 7 O -0.58 -32.37 13.95 -3.04 -0.04 -32.41 16 8 C 0.05 2.24 2.78 -13.03 -0.04 2.20 16 9 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 10 C -0.53 -25.55 7.12 25.60 0.18 -25.36 16 11 H 0.07 3.38 7.81 -2.91 -0.02 3.36 16 12 C 0.04 1.93 3.99 84.65 0.34 2.27 16 13 N -0.88 -48.78 10.89 21.45 0.23 -48.55 16 14 Si 0.94 40.25 29.54 68.60 2.03 42.27 16 15 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 16 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 17 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 18 C -0.04 -1.74 4.52 -19.86 -0.09 -1.83 16 19 C -0.12 -5.49 8.21 22.27 0.18 -5.30 16 20 C -0.15 -5.91 10.05 22.27 0.22 -5.69 16 21 C -0.14 -5.34 10.05 22.27 0.22 -5.11 16 22 C -0.15 -6.22 10.05 22.27 0.22 -6.00 16 23 C -0.09 -4.09 8.20 22.27 0.18 -3.91 16 24 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.41 13.69 8.36 -92.70 -0.77 12.92 16 32 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 33 H 0.10 4.60 7.01 -2.91 -0.02 4.58 16 34 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 35 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 36 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 37 H 0.11 5.51 6.02 -2.91 -0.02 5.49 16 Total: -1.00 -65.14 323.26 2.77 -62.37 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 0.29 Total: 34.03 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 4.05 Total: -18.06 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -2.29 Total: -79.32 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.04 Total: -32.41 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.27 kcal Atomic # 16 Polarization: -7.62 SS G_CDS: -1.26 Total: -8.88 kcal Total: -65.14 2.77 -62.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587214802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.817 kcal (2) G-P(sol) polarization free energy of solvation -65.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds