Wall clock time and date at job start Wed Apr 15 2020 11:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99949 * 2 1 4 4 H 1.48505 * 109.46947 * 269.99537 * 3 2 1 5 5 H 1.48498 * 109.47688 * 29.99963 * 3 2 1 6 6 H 1.48502 * 109.47193 * 150.00468 * 3 2 1 7 7 C 1.37873 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99983 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00424 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47344 * 180.02562 * 9 7 2 11 11 C 1.38001 * 126.40270 * 270.19333 * 10 9 7 12 12 C 1.38848 * 133.98051 * 359.94374 * 11 10 9 13 13 C 1.37858 * 119.71446 * 180.29623 * 12 11 10 14 14 C 1.38808 * 120.47594 * 0.02562 * 13 12 11 15 15 C 1.36549 * 120.69143 * 359.95613 * 14 13 12 16 16 C 1.39920 * 119.88792 * 0.04471 * 15 14 13 17 17 N 1.35437 * 133.41946 * 179.97438 * 16 15 14 18 18 C 1.30987 * 109.63986 * 180.02562 * 17 16 15 19 19 C 1.48002 * 125.10326 * 179.97438 * 18 17 16 20 20 C 1.39436 * 119.73615 * 0.02562 * 19 18 17 21 21 C 1.38432 * 119.05340 * 179.97438 * 20 19 18 22 22 C 1.38753 * 118.51633 * 0.02562 * 21 20 19 23 23 C 1.38369 * 119.37945 * 0.27754 * 22 21 20 24 24 N 1.31665 * 120.90855 * 359.41737 * 23 22 21 25 25 H 0.97002 * 119.99656 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46937 * 60.00183 * 9 7 2 27 27 H 1.08994 * 109.47146 * 300.00185 * 9 7 2 28 28 H 1.08000 * 120.14449 * 0.31657 * 12 11 10 29 29 H 1.08003 * 119.76120 * 179.97438 * 13 12 11 30 30 H 1.08001 * 119.65942 * 179.97438 * 14 13 12 31 31 H 1.08003 * 120.06021 * 180.02562 * 15 14 13 32 32 H 1.07997 * 120.46944 * 359.95736 * 20 19 18 33 33 H 1.08006 * 120.73951 * 180.02562 * 21 20 19 34 34 H 1.08002 * 120.30764 * 179.97438 * 22 21 20 35 35 H 1.08001 * 119.54563 * 179.70409 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0001 11 6 4.2697 -3.3484 1.1109 12 6 4.1895 -3.1306 2.4798 13 6 4.5480 -4.1348 3.3536 14 6 4.9888 -5.3608 2.8746 15 6 5.0743 -5.5946 1.5320 16 6 4.7160 -4.5909 0.6253 17 7 4.6939 -4.5229 -0.7272 18 6 4.2714 -3.3409 -1.1016 19 6 4.1158 -2.8980 -2.5052 20 6 4.4304 -3.7720 -3.5451 21 6 4.2791 -3.3433 -4.8527 22 6 3.8185 -2.0540 -5.0779 23 6 3.5311 -1.2375 -3.9984 24 7 3.6782 -1.6716 -2.7641 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6796 0.8895 27 1 3.8745 -0.6808 -0.8904 28 1 3.8474 -2.1788 2.8584 29 1 4.4863 -3.9661 4.4186 30 1 5.2667 -6.1381 3.5710 31 1 5.4182 -6.5525 1.1705 32 1 4.7874 -4.7691 -3.3335 33 1 4.5144 -3.9978 -5.6790 34 1 3.6901 -1.6895 -6.0864 35 1 3.1770 -0.2318 -4.1706 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003112858.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:49 Heat of formation + Delta-G solvation = 116.198559 kcal Electronic energy + Delta-G solvation = -20769.629716 eV Core-core repulsion = 17733.507220 eV Total energy + Delta-G solvation = -3036.122496 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.56039 -39.67181 -36.83066 -34.17712 -32.39969 -32.25289 -31.57325 -29.99305 -28.39071 -27.67943 -24.30888 -23.34680 -22.94593 -21.45633 -21.26413 -19.64757 -17.11219 -16.94563 -16.80101 -16.19254 -15.61336 -15.46902 -14.93169 -14.44345 -14.17797 -13.57642 -13.52983 -13.42770 -13.23693 -12.93488 -12.54756 -12.08132 -11.66946 -11.61994 -11.53999 -11.22724 -10.88008 -10.75529 -10.46602 -9.79919 -9.73732 -9.53884 -9.35500 -9.11629 -9.03485 -8.67810 -7.60121 -7.47509 -6.20613 -4.21176 0.79711 1.48478 1.71237 2.06276 3.17614 3.22619 3.25366 3.26961 3.43286 4.03742 4.19507 4.26769 4.38976 4.89770 4.96677 5.00153 5.10000 5.20077 5.29986 5.34917 5.44916 5.58565 5.84354 5.86634 5.92672 6.00352 6.07953 6.22785 6.30008 6.37673 6.59163 6.73459 6.86557 6.91651 7.01933 7.23268 7.33825 7.39075 7.75518 8.16141 8.33202 8.42590 8.81020 9.35873 10.92248 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.011443 B = 0.008867 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.408483 B = 3157.051309 C = 5235.694349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.081 3.919 3 Si 0.873 3.127 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.523 4.523 8 H 0.075 0.925 9 C 0.204 3.796 10 N -0.429 5.429 11 C 0.058 3.942 12 C -0.092 4.092 13 C -0.118 4.118 14 C -0.135 4.135 15 C -0.071 4.071 16 C 0.042 3.958 17 N -0.494 5.494 18 C 0.318 3.682 19 C 0.197 3.803 20 C -0.129 4.129 21 C -0.082 4.082 22 C -0.170 4.170 23 C 0.106 3.894 24 N -0.442 5.442 25 H 0.267 0.733 26 H 0.035 0.965 27 H 0.074 0.926 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.146 0.854 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.228 -5.263 -4.266 12.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.122 4.122 3 Si 0.699 3.301 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.561 4.561 8 H 0.093 0.907 9 C 0.085 3.915 10 N -0.111 5.111 11 C -0.056 4.056 12 C -0.112 4.112 13 C -0.138 4.138 14 C -0.156 4.156 15 C -0.091 4.091 16 C -0.080 4.080 17 N -0.216 5.216 18 C 0.055 3.945 19 C 0.060 3.940 20 C -0.151 4.151 21 C -0.108 4.108 22 C -0.191 4.191 23 C -0.053 4.053 24 N -0.151 5.151 25 H 0.077 0.923 26 H 0.053 0.947 27 H 0.092 0.908 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.164 0.836 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.021 -5.029 -4.101 11.939 hybrid contribution -0.017 1.130 -0.201 1.148 sum 10.004 -3.899 -4.302 11.567 Atomic orbital electron populations 1.69881 1.06123 1.27124 1.49731 1.24714 0.94677 0.98604 0.94185 0.86910 0.80229 0.83898 0.79052 1.19527 1.20885 1.19159 1.20974 0.87679 0.95148 1.52333 0.90714 1.20405 0.97182 0.74489 0.99450 1.45726 1.47795 1.14262 1.03358 1.18999 1.03948 0.92720 0.89887 1.20088 1.01578 1.00376 0.89167 1.20772 1.01018 0.93158 0.98835 1.20485 1.02962 0.97463 0.94651 1.19863 1.00548 0.97200 0.91474 1.19010 1.05050 0.94031 0.89911 1.70335 1.23171 1.17115 1.11007 1.20785 0.99401 0.87112 0.87217 1.18341 0.96563 0.90390 0.88709 1.22004 0.99890 1.01122 0.92090 1.21479 0.96874 0.95883 0.96586 1.22244 1.00967 0.95174 1.00686 1.22788 0.95463 1.00131 0.86938 1.67765 1.09626 1.14315 1.23424 0.92341 0.94679 0.90827 0.85794 0.85858 0.86049 0.86025 0.83640 0.84575 0.84777 0.82434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.96 55.43 0.77 -25.87 16 2 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.87 20.59 27.47 -169.99 -4.67 15.92 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.52 -14.71 9.94 -34.44 -0.34 -15.05 16 8 H 0.07 2.40 8.06 -52.48 -0.42 1.98 16 9 C 0.20 4.99 4.34 -5.19 -0.02 4.97 16 10 N -0.43 -10.01 2.81 -112.96 -0.32 -10.33 16 11 C 0.06 1.26 6.87 -83.94 -0.58 0.68 16 12 C -0.09 -1.73 10.05 -39.49 -0.40 -2.13 16 13 C -0.12 -1.81 10.03 -39.51 -0.40 -2.20 16 14 C -0.13 -1.96 9.96 -39.98 -0.40 -2.36 16 15 C -0.07 -1.18 10.05 -39.56 -0.40 -1.58 16 16 C 0.04 0.87 7.22 -84.73 -0.61 0.26 16 17 N -0.49 -10.45 10.81 -8.69 -0.09 -10.54 16 18 C 0.32 6.99 7.67 -154.58 -1.19 5.80 16 19 C 0.20 3.88 6.75 -83.01 -0.56 3.32 16 20 C -0.13 -2.02 9.71 -39.06 -0.38 -2.40 16 21 C -0.08 -1.02 10.16 -39.32 -0.40 -1.42 16 22 C -0.17 -2.11 10.11 -39.34 -0.40 -2.51 16 23 C 0.11 1.67 11.18 -17.58 -0.20 1.47 16 24 N -0.44 -8.87 7.48 -9.82 -0.07 -8.94 16 25 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.04 0.84 7.20 -51.93 -0.37 0.47 16 27 H 0.07 1.78 5.45 -51.93 -0.28 1.49 16 28 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 29 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 32 H 0.15 2.11 7.79 -52.49 -0.41 1.70 16 33 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.16 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 306.00 15.07 4.61 4.61 Total: -1.00 -32.85 306.00 -9.74 -42.60 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -3.62 Total: 3.49 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -6.36 Total: -10.94 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.29 Total: -55.68 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.85 -9.74 -42.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003112858.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.797 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds