Wall clock time and date at job start Wed Apr 15 2020 11:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99949 * 2 1 4 4 H 1.48505 * 109.46947 * 269.99537 * 3 2 1 5 5 H 1.48498 * 109.47688 * 29.99963 * 3 2 1 6 6 H 1.48502 * 109.47193 * 150.00468 * 3 2 1 7 7 C 1.37873 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99983 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00424 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47344 * 180.02562 * 9 7 2 11 11 C 1.38001 * 126.40270 * 270.19333 * 10 9 7 12 12 C 1.38848 * 133.98051 * 359.94374 * 11 10 9 13 13 C 1.37858 * 119.71446 * 180.29623 * 12 11 10 14 14 C 1.38808 * 120.47594 * 0.02562 * 13 12 11 15 15 C 1.36549 * 120.69143 * 359.95613 * 14 13 12 16 16 C 1.39920 * 119.88792 * 0.04471 * 15 14 13 17 17 N 1.35437 * 133.41946 * 179.97438 * 16 15 14 18 18 C 1.30987 * 109.63986 * 180.02562 * 17 16 15 19 19 C 1.48002 * 125.10326 * 179.97438 * 18 17 16 20 20 C 1.39436 * 119.73615 * 0.02562 * 19 18 17 21 21 C 1.38432 * 119.05340 * 179.97438 * 20 19 18 22 22 C 1.38753 * 118.51633 * 0.02562 * 21 20 19 23 23 C 1.38369 * 119.37945 * 0.27754 * 22 21 20 24 24 N 1.31665 * 120.90855 * 359.41737 * 23 22 21 25 25 H 0.97002 * 119.99656 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46937 * 60.00183 * 9 7 2 27 27 H 1.08994 * 109.47146 * 300.00185 * 9 7 2 28 28 H 1.08000 * 120.14449 * 0.31657 * 12 11 10 29 29 H 1.08003 * 119.76120 * 179.97438 * 13 12 11 30 30 H 1.08001 * 119.65942 * 179.97438 * 14 13 12 31 31 H 1.08003 * 120.06021 * 180.02562 * 15 14 13 32 32 H 1.07997 * 120.46944 * 359.95736 * 20 19 18 33 33 H 1.08006 * 120.73951 * 180.02562 * 21 20 19 34 34 H 1.08002 * 120.30764 * 179.97438 * 22 21 20 35 35 H 1.08001 * 119.54563 * 179.70409 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0001 11 6 4.2697 -3.3484 1.1109 12 6 4.1895 -3.1306 2.4798 13 6 4.5480 -4.1348 3.3536 14 6 4.9888 -5.3608 2.8746 15 6 5.0743 -5.5946 1.5320 16 6 4.7160 -4.5909 0.6253 17 7 4.6939 -4.5229 -0.7272 18 6 4.2714 -3.3409 -1.1016 19 6 4.1158 -2.8980 -2.5052 20 6 4.4304 -3.7720 -3.5451 21 6 4.2791 -3.3433 -4.8527 22 6 3.8185 -2.0540 -5.0779 23 6 3.5311 -1.2375 -3.9984 24 7 3.6782 -1.6716 -2.7641 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6796 0.8895 27 1 3.8745 -0.6808 -0.8904 28 1 3.8474 -2.1788 2.8584 29 1 4.4863 -3.9661 4.4186 30 1 5.2667 -6.1381 3.5710 31 1 5.4182 -6.5525 1.1705 32 1 4.7874 -4.7691 -3.3335 33 1 4.5144 -3.9978 -5.6790 34 1 3.6901 -1.6895 -6.0864 35 1 3.1770 -0.2318 -4.1706 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003112858.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:49 Heat of formation + Delta-G solvation = 96.227632 kcal Electronic energy + Delta-G solvation = -20770.495720 eV Core-core repulsion = 17733.507220 eV Total energy + Delta-G solvation = -3036.988501 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.05724 -40.88097 -38.19556 -35.98690 -34.31763 -33.48656 -32.82156 -31.49904 -29.76700 -29.51789 -25.59899 -24.91397 -24.50045 -22.79152 -22.68389 -21.18085 -19.26196 -18.32207 -18.17878 -17.65010 -16.81446 -16.64381 -16.63287 -16.01595 -15.67202 -15.07444 -14.98766 -14.80239 -14.57630 -14.47448 -14.13622 -13.69377 -13.42411 -12.86758 -12.74505 -12.71779 -12.55024 -12.38409 -12.18336 -11.86960 -11.14072 -11.06009 -10.92113 -10.84907 -10.35839 -10.27877 -9.07463 -8.89857 -8.39835 -6.46894 -0.49275 0.32728 0.44253 0.67933 1.29114 1.31583 1.40628 1.77349 1.91862 2.24949 2.68753 2.89943 2.93281 3.02750 3.51196 3.75592 4.01496 4.06236 4.13267 4.17839 4.18611 4.30599 4.41513 4.53505 4.58192 4.67419 4.84162 4.86610 4.95458 5.15597 5.20796 5.25396 5.33134 5.59279 5.59776 5.69501 5.75496 5.93617 6.01886 6.31453 6.49699 6.78997 7.03034 7.14726 8.77376 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.011443 B = 0.008867 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.408483 B = 3157.051309 C = 5235.694349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.028 3.972 3 Si 0.945 3.055 4 H -0.253 1.253 5 H -0.275 1.275 6 H -0.252 1.252 7 C -0.522 4.522 8 H 0.014 0.986 9 C 0.222 3.778 10 N -0.454 5.454 11 C 0.020 3.980 12 C -0.127 4.127 13 C -0.096 4.096 14 C -0.119 4.119 15 C -0.076 4.076 16 C 0.014 3.986 17 N -0.501 5.501 18 C 0.298 3.702 19 C 0.153 3.847 20 C -0.129 4.129 21 C -0.069 4.069 22 C -0.145 4.145 23 C 0.082 3.918 24 N -0.490 5.490 25 H 0.271 0.729 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.164 0.836 30 H 0.172 0.828 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.185 0.815 34 H 0.182 0.818 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.173 -5.746 -4.960 14.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.172 4.172 3 Si 0.767 3.233 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.176 1.176 7 C -0.561 4.561 8 H 0.032 0.968 9 C 0.102 3.898 10 N -0.138 5.138 11 C -0.092 4.092 12 C -0.147 4.147 13 C -0.116 4.116 14 C -0.139 4.139 15 C -0.095 4.095 16 C -0.107 4.107 17 N -0.223 5.223 18 C 0.036 3.964 19 C 0.017 3.983 20 C -0.151 4.151 21 C -0.095 4.095 22 C -0.165 4.165 23 C -0.077 4.077 24 N -0.201 5.201 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.133 0.867 29 H 0.181 0.819 30 H 0.190 0.810 31 H 0.166 0.834 32 H 0.168 0.832 33 H 0.202 0.798 34 H 0.200 0.800 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 11.990 -5.558 -4.778 14.053 hybrid contribution -0.655 1.106 0.008 1.285 sum 11.335 -4.452 -4.770 13.079 Atomic orbital electron populations 1.70035 1.08176 1.28555 1.51110 1.25644 0.95510 1.02756 0.93240 0.85768 0.79173 0.78239 0.80158 1.17716 1.20054 1.17625 1.20927 0.89682 0.92943 1.52500 0.96805 1.20005 0.94366 0.76129 0.99317 1.45678 1.49478 1.14065 1.04607 1.19586 1.05367 0.93475 0.90734 1.20334 1.03994 1.01618 0.88786 1.21307 0.97806 0.92231 1.00244 1.21059 1.00359 0.97981 0.94496 1.20333 0.99983 0.97286 0.91931 1.19622 1.06117 0.94820 0.90158 1.70301 1.23594 1.16807 1.11597 1.21495 0.99378 0.87306 0.88264 1.18498 0.99697 0.91631 0.88511 1.22182 0.99398 1.00731 0.92790 1.22027 0.94820 0.96431 0.96201 1.22711 0.97673 0.94365 1.01709 1.23235 0.96115 1.01487 0.86851 1.67560 1.11275 1.15199 1.26044 0.91936 0.94660 0.90395 0.86683 0.81872 0.81041 0.83431 0.83170 0.79781 0.80046 0.81213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.73 13.96 21.45 0.30 -58.43 16 2 C 0.03 1.61 5.47 84.65 0.46 2.07 16 3 Si 0.94 43.34 27.47 68.60 1.88 45.22 16 4 H -0.25 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 7 C -0.52 -31.42 9.94 25.60 0.25 -31.17 16 8 H 0.01 0.96 8.06 -2.91 -0.02 0.94 16 9 C 0.22 11.52 4.34 85.63 0.37 11.89 16 10 N -0.45 -22.69 2.81 -511.29 -1.44 -24.13 16 11 C 0.02 0.92 6.87 38.91 0.27 1.19 16 12 C -0.13 -4.92 10.05 22.33 0.22 -4.70 16 13 C -0.10 -2.76 10.03 22.32 0.22 -2.53 16 14 C -0.12 -3.06 9.96 22.01 0.22 -2.84 16 15 C -0.08 -2.41 10.05 22.28 0.22 -2.18 16 16 C 0.01 0.59 7.22 39.59 0.29 0.88 16 17 N -0.50 -22.19 10.81 -181.41 -1.96 -24.15 16 18 C 0.30 13.98 7.67 136.57 1.05 15.03 16 19 C 0.15 6.30 6.75 41.88 0.28 6.58 16 20 C -0.13 -4.01 9.71 22.60 0.22 -3.79 16 21 C -0.07 -1.51 10.16 22.44 0.23 -1.28 16 22 C -0.14 -3.14 10.11 22.42 0.23 -2.91 16 23 C 0.08 2.55 11.18 84.75 0.95 3.50 16 24 N -0.49 -20.45 7.48 -184.99 -1.38 -21.84 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.04 1.78 7.20 -2.38 -0.02 1.77 16 27 H 0.08 3.95 5.45 -2.39 -0.01 3.93 16 28 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 29 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 30 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 32 H 0.15 4.36 7.79 -2.91 -0.02 4.33 16 33 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.18 2.22 8.06 -2.91 -0.02 2.19 16 35 H 0.17 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -80.33 306.00 3.94 -76.39 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 1.05 Total: 17.20 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 5.48 Total: -10.26 kcal Atomic # 7 Polarization: -124.07 SS G_CDS: -4.48 Total: -128.55 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.22 kcal Total: -80.33 3.94 -76.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003112858.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.614 kcal (2) G-P(sol) polarization free energy of solvation -80.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds