Wall clock time and date at job start Wed Apr 15 2020 11:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99560 * 2 1 4 4 H 1.48503 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47305 * 300.00086 * 3 2 1 6 6 H 1.48493 * 109.47092 * 60.00209 * 3 2 1 7 7 C 1.37875 * 120.00714 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00247 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99384 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46795 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46890 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.46888 * 180.02562 * 11 10 9 13 13 C 1.47167 * 110.99605 * 170.96277 * 12 11 10 14 14 C 1.52894 * 108.50393 * 52.15239 * 13 12 11 15 15 C 1.50724 * 109.95792 * 50.39168 * 14 13 12 16 16 C 1.38691 * 118.47179 * 163.21870 * 15 14 13 17 17 C 1.38006 * 120.36917 * 179.73171 * 16 15 14 18 18 C 1.38385 * 119.81432 * 0.03422 * 17 16 15 19 19 Cl 1.73601 * 120.07923 * 180.09833 * 18 17 16 20 20 C 1.38128 * 119.83569 * 0.07198 * 18 17 16 21 21 C 1.37836 * 121.65835 * 343.10021 * 15 14 13 22 22 C 1.46626 * 111.00360 * 293.95281 * 12 11 10 23 23 H 0.97000 * 120.00078 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46982 * 60.00802 * 9 7 2 25 25 H 1.08993 * 109.47610 * 300.00252 * 9 7 2 26 26 H 1.09003 * 109.46739 * 60.00607 * 10 9 7 27 27 H 1.08995 * 109.47709 * 300.00344 * 10 9 7 28 28 H 1.08997 * 109.47427 * 60.00253 * 11 10 9 29 29 H 1.09002 * 109.47341 * 299.99921 * 11 10 9 30 30 H 1.09004 * 109.62584 * 171.85698 * 13 12 11 31 31 H 1.08998 * 109.63425 * 292.44197 * 13 12 11 32 32 H 1.08998 * 109.38603 * 170.53822 * 14 13 12 33 33 H 1.08996 * 109.38782 * 290.34191 * 14 13 12 34 34 H 1.07998 * 119.81773 * 359.71886 * 16 15 14 35 35 H 1.07999 * 120.09975 * 180.02562 * 17 16 15 36 36 H 1.08007 * 119.81550 * 180.20608 * 20 18 17 37 37 H 1.08998 * 109.27323 * 168.84207 * 22 12 11 38 38 H 1.09004 * 109.26936 * 49.36887 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 6 1.4805 -4.9870 -0.0012 12 7 2.4352 -6.1035 -0.0006 13 6 1.7465 -7.3861 0.2147 14 6 0.6045 -7.4992 -0.7956 15 6 1.1155 -7.2111 -2.1840 16 6 0.3412 -7.5992 -3.2673 17 6 0.7688 -7.3499 -4.5555 18 6 1.9773 -6.7099 -4.7676 19 17 2.5206 -6.3906 -6.3852 20 6 2.7498 -6.3252 -3.6891 21 6 2.3205 -6.5757 -2.3941 22 6 3.2001 -6.1417 -1.2510 23 1 -0.4850 0.8400 -0.0004 24 1 0.6243 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.8721 -3.6042 0.8895 27 1 2.8722 -3.6042 -0.8904 28 1 0.8542 -5.0446 -0.8914 29 1 0.8536 -5.0451 0.8886 30 1 2.4479 -8.2075 0.0680 31 1 1.3445 -7.4206 1.2272 32 1 0.1918 -8.5075 -0.7639 33 1 -0.1752 -6.7809 -0.5423 34 1 -0.6016 -8.0994 -3.1018 35 1 0.1622 -7.6536 -5.3959 36 1 3.6913 -5.8227 -3.8550 37 1 4.0265 -6.8445 -1.1459 38 1 3.5976 -5.1485 -1.4599 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090613468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:51 Heat of formation + Delta-G solvation = -13.230319 kcal Electronic energy + Delta-G solvation = -19281.904978 eV Core-core repulsion = 16341.277518 eV Total energy + Delta-G solvation = -2940.627460 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.53129 -38.74156 -37.31770 -35.83559 -34.01451 -33.35998 -31.79656 -30.08904 -28.64756 -26.04510 -24.80166 -23.59252 -23.40349 -22.05383 -20.07018 -18.44086 -17.81440 -17.13146 -16.69898 -16.47114 -16.14340 -15.94063 -15.57270 -14.92120 -14.74795 -14.40064 -14.30079 -13.93330 -13.64272 -13.45896 -13.12314 -13.03907 -12.76475 -12.66552 -12.47157 -12.40910 -12.22801 -12.00108 -11.88892 -11.67123 -11.38374 -11.31697 -11.07231 -10.55371 -9.84508 -9.47330 -9.29139 -8.20059 -6.30744 0.11551 0.24611 1.11260 1.39684 1.39807 1.53390 2.40861 2.54879 3.01166 3.13298 3.67377 3.70777 3.86564 4.02561 4.13699 4.18272 4.26027 4.37035 4.47141 4.52593 4.63333 4.73924 4.81712 4.84373 4.92053 4.93199 4.96598 5.08643 5.13338 5.19218 5.21999 5.29382 5.52707 5.53128 5.74940 5.81976 5.86401 6.08617 6.15138 6.28093 6.86275 7.38572 8.92132 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015261 B = 0.004512 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.356336 B = 6204.628301 C = 7322.288850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.059 0.941 9 C 0.028 3.972 10 C -0.091 4.091 11 C 0.066 3.934 12 N -0.530 5.530 13 C 0.051 3.949 14 C -0.116 4.116 15 C -0.083 4.083 16 C -0.108 4.108 17 C -0.118 4.118 18 C -0.048 4.048 19 Cl -0.074 7.074 20 C -0.117 4.117 21 C -0.106 4.106 22 C 0.087 3.913 23 H 0.263 0.737 24 H -0.015 1.015 25 H -0.007 1.007 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.017 -19.769 -6.596 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.578 4.578 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.129 4.129 11 C -0.062 4.062 12 N -0.251 5.251 13 C -0.077 4.077 14 C -0.155 4.155 15 C -0.083 4.083 16 C -0.126 4.126 17 C -0.137 4.137 18 C -0.074 4.074 19 Cl -0.046 7.046 20 C -0.136 4.136 21 C -0.108 4.108 22 C -0.042 4.042 23 H 0.072 0.928 24 H 0.003 0.997 25 H 0.011 0.989 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.126 0.874 33 H 0.091 0.909 34 H 0.172 0.828 35 H 0.167 0.833 36 H 0.154 0.846 37 H 0.125 0.875 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.273 -19.559 -6.310 20.810 hybrid contribution -0.451 1.154 -1.070 1.637 sum 2.822 -18.405 -7.380 20.029 Atomic orbital electron populations 1.70101 1.07792 1.27653 1.51894 1.25967 0.95750 1.03309 0.94751 0.85424 0.79139 0.78850 0.77814 1.18578 1.20456 1.20191 1.21712 0.93487 0.92389 1.50230 0.92324 1.18944 0.94366 0.93169 0.94497 1.21416 0.97988 0.92968 1.00502 1.22027 0.93815 0.90300 1.00009 1.62659 1.26262 1.03610 1.32570 1.22368 0.94990 0.91105 0.99238 1.21177 0.99574 1.03877 0.90827 1.19945 0.93988 0.97559 0.96850 1.21356 1.00412 0.99943 0.90914 1.21241 0.94751 0.98990 0.98671 1.20995 0.97096 1.03582 0.85777 1.98358 1.89940 1.94518 1.21747 1.21129 1.00761 1.00696 0.91027 1.20502 0.96560 0.98434 0.95300 1.21257 0.95530 1.02512 0.84863 0.92804 0.99662 0.98897 0.92756 0.93484 0.95604 0.91158 0.88968 0.88933 0.87440 0.90879 0.82769 0.83268 0.84577 0.87462 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.50 4.97 29.85 0.15 1.65 16 10 C -0.09 -3.83 5.10 30.60 0.16 -3.67 16 11 C 0.07 2.26 3.95 86.30 0.34 2.61 16 12 N -0.53 -14.49 5.02 -901.16 -4.53 -19.02 16 13 C 0.05 1.03 6.03 86.22 0.52 1.55 16 14 C -0.12 -2.30 5.17 29.82 0.15 -2.15 16 15 C -0.08 -1.94 5.05 -19.84 -0.10 -2.04 16 16 C -0.11 -2.24 9.65 22.32 0.22 -2.03 16 17 C -0.12 -2.54 9.84 22.25 0.22 -2.32 16 18 C -0.05 -1.17 6.32 22.28 0.14 -1.03 16 19 Cl -0.07 -1.71 28.96 -2.72 -0.08 -1.78 16 20 C -0.12 -2.99 9.43 22.36 0.21 -2.78 16 21 C -0.11 -2.72 5.21 -19.87 -0.10 -2.83 16 22 C 0.09 2.22 5.43 85.59 0.46 2.69 16 23 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 24 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 25 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 26 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.05 1.96 6.35 -2.39 -0.02 1.94 16 28 H 0.03 0.93 5.87 -2.39 -0.01 0.92 16 29 H 0.07 2.38 8.09 -2.39 -0.02 2.37 16 30 H 0.09 1.59 8.05 -2.38 -0.02 1.57 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.65 7.04 -2.39 -0.02 1.63 16 34 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 35 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 37 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.08 2.34 6.04 -2.39 -0.01 2.33 16 Total: -1.00 -66.03 319.34 1.81 -64.22 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 1.04 Total: 8.12 kcal Atomic # 6 Polarization: -44.17 SS G_CDS: 3.06 Total: -41.11 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -4.24 Total: -76.46 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.78 kcal Total: -66.03 1.81 -64.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090613468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.986 kcal (2) G-P(sol) polarization free energy of solvation -66.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds