Wall clock time and date at job start Wed Apr 15 2020 11:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42101 * 109.47266 * 2 1 4 4 C 1.76202 * 103.00142 * 109.05440 * 2 1 3 5 5 C 1.38242 * 119.99733 * 89.99529 * 4 2 1 6 6 C 1.38230 * 119.99890 * 179.97438 * 5 4 2 7 7 C 1.38241 * 120.00038 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00065 * 179.97438 * 7 6 5 9 9 N 1.46502 * 109.47204 * 89.99938 * 8 7 6 10 10 C 1.36932 * 119.99913 * 270.00010 * 9 8 7 11 11 H 1.08005 * 120.00167 * 140.44900 * 10 9 8 12 12 C 1.38812 * 120.00128 * 320.44969 * 10 9 8 13 13 N 1.31618 * 119.99724 * 340.37212 * 12 10 9 14 14 Si 1.86804 * 120.00087 * 160.37771 * 12 10 9 15 15 H 1.48506 * 109.46903 * 89.99926 * 14 12 10 16 16 H 1.48499 * 109.46869 * 209.99679 * 14 12 10 17 17 H 1.48490 * 109.47031 * 329.99792 * 14 12 10 18 18 C 1.46499 * 120.00079 * 89.99935 * 9 8 7 19 19 C 1.53003 * 117.50003 * 183.28757 * 18 9 8 20 20 C 1.52995 * 117.49992 * 114.66657 * 18 9 8 21 21 C 1.38236 * 119.99921 * 0.06848 * 7 6 5 22 22 C 1.38228 * 119.99904 * 269.98019 * 4 2 1 23 23 H 1.09005 * 109.47076 * 310.94591 * 1 2 3 24 24 H 1.08997 * 109.47340 * 70.94417 * 1 2 3 25 25 H 1.08995 * 109.47222 * 190.94504 * 1 2 3 26 26 H 1.07998 * 119.99842 * 359.97438 * 5 4 2 27 27 H 1.07993 * 120.00237 * 179.72785 * 6 5 4 28 28 H 1.09001 * 109.47264 * 209.99836 * 8 7 6 29 29 H 1.08997 * 109.47519 * 329.99731 * 8 7 6 30 30 H 0.97006 * 120.00197 * 175.02800 * 13 12 10 31 31 H 1.09003 * 115.54847 * 328.99522 * 18 9 8 32 32 H 1.08999 * 117.49551 * 0.02562 * 19 18 9 33 33 H 1.09000 * 117.49842 * 145.02096 * 19 18 9 34 34 H 1.09007 * 117.50170 * 214.98158 * 20 18 9 35 35 H 1.09006 * 117.49816 * 359.97239 * 20 18 9 36 36 H 1.08000 * 120.00285 * 180.02562 * 21 7 6 37 37 H 1.08000 * 120.00154 * 359.97173 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2104 -0.5605 1.6228 5 6 2.3658 -1.9120 1.8685 6 6 2.6773 -2.3517 3.1414 7 6 2.8329 -1.4400 4.1689 8 6 3.1720 -1.9194 5.5567 9 7 4.6277 -1.9734 5.7127 10 6 5.3078 -3.1196 5.3985 11 1 6.2638 -3.0606 4.8994 12 6 4.7687 -4.3573 5.7213 13 7 3.8330 -4.4474 6.6426 14 14 5.3711 -5.8950 4.8483 15 1 6.5140 -6.4746 5.5989 16 1 4.2696 -6.8884 4.7790 17 1 5.8087 -5.5442 3.4734 18 6 5.3556 -0.8012 6.2049 19 6 6.8813 -0.8943 6.2729 20 6 6.0550 -0.9218 7.5603 21 6 2.6756 -0.0887 3.9236 22 6 2.3663 0.3512 2.6500 23 1 -0.3633 0.6735 0.7763 24 1 -0.3634 0.3355 -0.9713 25 1 -0.3633 -1.0089 0.1951 26 1 2.2438 -2.6242 1.0659 27 1 2.7944 -3.4078 3.3344 28 1 2.7532 -1.2314 6.2912 29 1 2.7530 -2.9138 5.7101 30 1 3.4052 -5.3002 6.8177 31 1 4.9210 0.1645 5.9469 32 1 7.3434 -1.8276 5.9511 33 1 7.4507 0.0103 6.0596 34 1 6.0809 -0.0352 8.1940 35 1 5.9731 -1.8731 8.0861 36 1 2.7976 0.6237 4.7261 37 1 2.2456 1.4071 2.4579 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352738827.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:41 Heat of formation + Delta-G solvation = 35.558714 kcal Electronic energy + Delta-G solvation = -19445.402418 eV Core-core repulsion = 16508.934316 eV Total energy + Delta-G solvation = -2936.468102 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -38.76077 -36.88469 -35.58878 -33.74031 -31.74692 -30.44479 -29.69008 -28.77095 -25.80203 -23.77627 -22.21067 -21.44173 -20.91656 -19.77347 -17.83889 -16.66500 -16.16612 -15.51976 -14.88224 -14.79905 -14.73070 -14.54361 -13.84688 -13.63890 -13.52006 -12.96603 -12.94304 -12.66973 -12.21378 -11.94820 -11.83040 -11.57848 -11.20861 -10.89643 -10.78336 -10.70927 -10.40193 -10.28085 -9.99915 -9.88138 -9.66619 -9.35534 -8.59455 -8.58057 -8.44242 -8.12892 -6.64615 -5.90976 -3.55430 1.32117 1.90509 2.11721 2.85652 3.26029 3.35077 3.38276 3.93943 4.22512 4.38827 4.90408 5.13388 5.21915 5.22869 5.28704 5.29957 5.40177 5.73479 5.87783 5.90510 5.93371 6.01726 6.10327 6.21148 6.34910 6.38552 6.47926 6.59693 6.65245 6.71123 6.90087 7.01093 7.19844 7.22419 7.43981 7.54986 7.69980 8.38544 9.01978 9.62779 10.22063 11.04504 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.018970 B = 0.005336 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.689093 B = 5246.104687 C = 6091.685060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.325 4.675 3 O -0.867 6.867 4 C -0.480 4.480 5 C -0.050 4.050 6 C -0.116 4.116 7 C -0.032 4.032 8 C 0.172 3.828 9 N -0.541 5.541 10 C -0.256 4.256 11 H 0.064 0.936 12 C 0.016 3.984 13 N -0.880 5.880 14 Si 0.893 3.107 15 H -0.284 1.284 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.119 3.881 19 C -0.194 4.194 20 C -0.217 4.217 21 C -0.138 4.138 22 C -0.059 4.059 23 H 0.078 0.922 24 H 0.099 0.901 25 H 0.108 0.892 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.039 0.961 29 H 0.106 0.894 30 H 0.257 0.743 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.562 3.312 -10.516 12.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.524 4.476 3 O -0.863 6.863 4 C -0.578 4.578 5 C -0.070 4.070 6 C -0.136 4.136 7 C -0.036 4.036 8 C 0.046 3.954 9 N -0.256 5.256 10 C -0.385 4.385 11 H 0.081 0.919 12 C -0.185 4.185 13 N -0.521 5.521 14 Si 0.721 3.279 15 H -0.211 1.211 16 H -0.212 1.212 17 H -0.200 1.200 18 C 0.011 3.989 19 C -0.232 4.232 20 C -0.258 4.258 21 C -0.158 4.158 22 C -0.078 4.078 23 H 0.097 0.903 24 H 0.118 0.882 25 H 0.127 0.873 26 H 0.144 0.856 27 H 0.144 0.856 28 H 0.058 0.942 29 H 0.123 0.877 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.023 3.408 -11.123 12.671 hybrid contribution -0.493 0.449 1.468 1.613 sum -5.516 3.857 -9.655 11.770 Atomic orbital electron populations 1.27785 1.23418 1.07688 1.06619 1.69184 0.85513 0.99243 0.93686 1.93066 1.73027 1.37382 1.82831 1.27117 1.15921 0.99756 1.15040 1.20761 0.96051 0.93134 0.97039 1.21218 0.99699 1.00319 0.92394 1.21484 0.89534 0.92693 0.99861 1.20100 0.85181 1.02630 0.87449 1.43226 1.01449 1.09109 1.71858 1.19015 1.04887 0.83108 1.31510 0.91869 1.25236 0.99378 0.98059 0.95852 1.70060 1.28035 1.25226 1.28805 0.86468 0.78335 0.82970 0.80105 1.21056 1.21242 1.19969 1.21209 0.90635 0.91205 0.95882 1.23020 0.95174 1.01944 1.03074 1.23338 1.08570 1.01694 0.92202 1.21128 1.02375 0.95893 0.96395 1.20911 0.95738 0.98451 0.92693 0.90297 0.88219 0.87273 0.85582 0.85569 0.94249 0.87691 0.93341 0.89711 0.88409 0.90796 0.91218 0.88868 0.86835 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -4.72 10.70 101.05 1.08 -3.64 16 2 S 1.33 14.76 14.19 -107.50 -1.53 13.23 16 3 O -0.87 -15.24 16.90 -35.23 -0.60 -15.83 16 4 C -0.48 -7.20 5.61 -39.58 -0.22 -7.43 16 5 C -0.05 -0.74 9.75 -39.58 -0.39 -1.12 16 6 C -0.12 -2.13 9.70 -39.58 -0.38 -2.51 16 7 C -0.03 -0.64 5.46 -104.62 -0.57 -1.21 16 8 C 0.17 3.83 5.46 -5.20 -0.03 3.80 16 9 N -0.54 -12.86 2.73 -167.03 -0.46 -13.32 16 10 C -0.26 -6.55 8.47 -15.06 -0.13 -6.68 16 11 H 0.06 1.66 6.75 -52.48 -0.35 1.30 16 12 C 0.02 0.41 4.98 -17.43 -0.09 0.32 16 13 N -0.88 -23.63 11.50 55.49 0.64 -22.99 16 14 Si 0.89 20.15 29.60 -169.99 -5.03 15.12 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 C 0.12 2.56 6.56 -67.93 -0.45 2.11 16 19 C -0.19 -3.87 9.80 -26.73 -0.26 -4.13 16 20 C -0.22 -4.43 10.36 -26.74 -0.28 -4.71 16 21 C -0.14 -2.54 9.70 -39.58 -0.38 -2.92 16 22 C -0.06 -1.02 9.44 -39.58 -0.37 -1.40 16 23 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 24 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 27 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 28 H 0.04 0.84 8.02 -51.93 -0.42 0.43 16 29 H 0.11 2.58 5.54 -51.93 -0.29 2.29 16 30 H 0.26 6.65 8.32 -40.82 -0.34 6.31 16 31 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.10 2.11 6.46 -51.93 -0.34 1.77 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 36 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 37 H 0.11 2.01 7.45 -52.49 -0.39 1.62 16 LS Contribution 325.94 15.07 4.91 4.91 Total: -1.00 -32.61 325.94 -9.67 -42.29 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.15 Total: 6.11 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: -2.47 Total: -29.52 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.18 Total: -36.31 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.60 Total: -15.83 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Atomic # 16 Polarization: 14.76 SS G_CDS: -1.53 Total: 13.23 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.61 -9.67 -42.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352738827.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.844 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds