Wall clock time and date at job start Wed Apr 15 2020 11:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42101 * 109.47266 * 2 1 4 4 C 1.76202 * 103.00142 * 109.05440 * 2 1 3 5 5 C 1.38242 * 119.99733 * 89.99529 * 4 2 1 6 6 C 1.38230 * 119.99890 * 179.97438 * 5 4 2 7 7 C 1.38241 * 120.00038 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00065 * 179.97438 * 7 6 5 9 9 N 1.46502 * 109.47204 * 89.99938 * 8 7 6 10 10 C 1.36932 * 119.99913 * 270.00010 * 9 8 7 11 11 H 1.08005 * 120.00167 * 140.44900 * 10 9 8 12 12 C 1.38812 * 120.00128 * 320.44969 * 10 9 8 13 13 N 1.31618 * 119.99724 * 340.37212 * 12 10 9 14 14 Si 1.86804 * 120.00087 * 160.37771 * 12 10 9 15 15 H 1.48506 * 109.46903 * 89.99926 * 14 12 10 16 16 H 1.48499 * 109.46869 * 209.99679 * 14 12 10 17 17 H 1.48490 * 109.47031 * 329.99792 * 14 12 10 18 18 C 1.46499 * 120.00079 * 89.99935 * 9 8 7 19 19 C 1.53003 * 117.50003 * 183.28757 * 18 9 8 20 20 C 1.52995 * 117.49992 * 114.66657 * 18 9 8 21 21 C 1.38236 * 119.99921 * 0.06848 * 7 6 5 22 22 C 1.38228 * 119.99904 * 269.98019 * 4 2 1 23 23 H 1.09005 * 109.47076 * 310.94591 * 1 2 3 24 24 H 1.08997 * 109.47340 * 70.94417 * 1 2 3 25 25 H 1.08995 * 109.47222 * 190.94504 * 1 2 3 26 26 H 1.07998 * 119.99842 * 359.97438 * 5 4 2 27 27 H 1.07993 * 120.00237 * 179.72785 * 6 5 4 28 28 H 1.09001 * 109.47264 * 209.99836 * 8 7 6 29 29 H 1.08997 * 109.47519 * 329.99731 * 8 7 6 30 30 H 0.97006 * 120.00197 * 175.02800 * 13 12 10 31 31 H 1.09003 * 115.54847 * 328.99522 * 18 9 8 32 32 H 1.08999 * 117.49551 * 0.02562 * 19 18 9 33 33 H 1.09000 * 117.49842 * 145.02096 * 19 18 9 34 34 H 1.09007 * 117.50170 * 214.98158 * 20 18 9 35 35 H 1.09006 * 117.49816 * 359.97239 * 20 18 9 36 36 H 1.08000 * 120.00285 * 180.02562 * 21 7 6 37 37 H 1.08000 * 120.00154 * 359.97173 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2104 -0.5605 1.6228 5 6 2.3658 -1.9120 1.8685 6 6 2.6773 -2.3517 3.1414 7 6 2.8329 -1.4400 4.1689 8 6 3.1720 -1.9194 5.5567 9 7 4.6277 -1.9734 5.7127 10 6 5.3078 -3.1196 5.3985 11 1 6.2638 -3.0606 4.8994 12 6 4.7687 -4.3573 5.7213 13 7 3.8330 -4.4474 6.6426 14 14 5.3711 -5.8950 4.8483 15 1 6.5140 -6.4746 5.5989 16 1 4.2696 -6.8884 4.7790 17 1 5.8087 -5.5442 3.4734 18 6 5.3556 -0.8012 6.2049 19 6 6.8813 -0.8943 6.2729 20 6 6.0550 -0.9218 7.5603 21 6 2.6756 -0.0887 3.9236 22 6 2.3663 0.3512 2.6500 23 1 -0.3633 0.6735 0.7763 24 1 -0.3634 0.3355 -0.9713 25 1 -0.3633 -1.0089 0.1951 26 1 2.2438 -2.6242 1.0659 27 1 2.7944 -3.4078 3.3344 28 1 2.7532 -1.2314 6.2912 29 1 2.7530 -2.9138 5.7101 30 1 3.4052 -5.3002 6.8177 31 1 4.9210 0.1645 5.9469 32 1 7.3434 -1.8276 5.9511 33 1 7.4507 0.0103 6.0596 34 1 6.0809 -0.0352 8.1940 35 1 5.9731 -1.8731 8.0861 36 1 2.7976 0.6237 4.7261 37 1 2.2456 1.4071 2.4579 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352738827.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:41 Heat of formation + Delta-G solvation = 15.728473 kcal Electronic energy + Delta-G solvation = -19446.262322 eV Core-core repulsion = 16508.934316 eV Total energy + Delta-G solvation = -2937.328006 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.17515 -38.55294 -36.80749 -35.47029 -33.45358 -31.78933 -31.32809 -29.58336 -27.54705 -25.50160 -23.57420 -23.08019 -22.37488 -21.53409 -18.97795 -18.37002 -17.45272 -17.23943 -16.55611 -16.23369 -16.03209 -15.73147 -15.53514 -14.96607 -14.63797 -14.52753 -14.22615 -13.80485 -13.65245 -13.46100 -13.27914 -12.95464 -12.81113 -12.62707 -12.40357 -12.34253 -12.00526 -11.93129 -11.68858 -11.42131 -11.18661 -10.98983 -10.51147 -9.89814 -9.79082 -9.25072 -8.53236 -7.82303 -5.52646 0.09101 0.54495 1.06433 1.45502 1.49620 1.59026 1.86860 2.48694 2.76200 3.06993 3.14864 3.37237 3.61071 3.94687 4.14057 4.22116 4.25873 4.36692 4.45424 4.47907 4.53396 4.59299 4.62184 4.84735 4.88697 4.99006 5.01426 5.19187 5.20603 5.29971 5.37283 5.45859 5.50252 5.54739 5.69076 5.91758 6.14103 6.45483 7.11387 7.76611 8.32709 9.09597 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.018970 B = 0.005336 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.689093 B = 5246.104687 C = 6091.685060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.496 4.496 2 S 1.401 4.599 3 O -0.928 6.928 4 C -0.480 4.480 5 C -0.035 4.035 6 C -0.135 4.135 7 C -0.053 4.053 8 C 0.179 3.821 9 N -0.556 5.556 10 C -0.260 4.260 11 H 0.053 0.947 12 C -0.025 4.025 13 N -0.912 5.912 14 Si 0.950 3.050 15 H -0.290 1.290 16 H -0.284 1.284 17 H -0.266 1.266 18 C 0.098 3.902 19 C -0.180 4.180 20 C -0.211 4.211 21 C -0.146 4.146 22 C -0.075 4.075 23 H 0.059 0.941 24 H 0.124 0.876 25 H 0.138 0.862 26 H 0.182 0.818 27 H 0.114 0.886 28 H 0.033 0.967 29 H 0.079 0.921 30 H 0.254 0.746 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.115 0.885 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.132 3.432 -13.199 14.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 1.599 4.401 3 O -0.924 6.924 4 C -0.576 4.576 5 C -0.053 4.053 6 C -0.155 4.155 7 C -0.056 4.056 8 C 0.054 3.946 9 N -0.273 5.273 10 C -0.390 4.390 11 H 0.071 0.929 12 C -0.223 4.223 13 N -0.554 5.554 14 Si 0.777 3.223 15 H -0.217 1.217 16 H -0.209 1.209 17 H -0.191 1.191 18 C -0.010 4.010 19 C -0.218 4.218 20 C -0.252 4.252 21 C -0.166 4.166 22 C -0.095 4.095 23 H 0.079 0.921 24 H 0.143 0.857 25 H 0.157 0.843 26 H 0.199 0.801 27 H 0.132 0.868 28 H 0.052 0.948 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.566 3.540 -13.791 15.287 hybrid contribution -0.435 0.495 2.210 2.306 sum -6.000 4.034 -11.581 13.653 Atomic orbital electron populations 1.27746 1.20813 1.09296 1.07495 1.68482 0.85887 0.96170 0.89521 1.92952 1.75842 1.40753 1.82883 1.27779 1.13805 0.99656 1.16393 1.21263 0.93255 0.93981 0.96830 1.21320 1.00745 0.99556 0.93877 1.21193 0.92032 0.93620 0.98781 1.19870 0.84478 1.01008 0.89252 1.43382 1.01935 1.09347 1.72638 1.19074 1.04728 0.84136 1.31043 0.92932 1.25833 0.99732 1.00278 0.96453 1.70173 1.29452 1.25528 1.30276 0.85576 0.77508 0.79864 0.79314 1.21671 1.20937 1.19063 1.21471 0.91607 0.91221 0.96723 1.23011 0.94340 1.02403 1.02087 1.23237 1.08521 1.01218 0.92209 1.21118 1.02906 0.95348 0.97206 1.21023 0.96547 0.98848 0.93039 0.92145 0.85737 0.84345 0.80053 0.86766 0.94808 0.90341 0.93690 0.88188 0.90435 0.87533 0.88183 0.92292 0.86744 0.87249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -7.21 10.70 113.37 1.21 -5.99 16 2 S 1.40 26.41 14.19 -56.49 -0.80 25.61 16 3 O -0.93 -30.78 16.90 -148.98 -2.52 -33.30 16 4 C -0.48 -13.22 5.61 22.27 0.12 -13.09 16 5 C -0.03 -0.91 9.75 22.27 0.22 -0.69 16 6 C -0.14 -4.86 9.70 22.27 0.22 -4.65 16 7 C -0.05 -2.15 5.46 -19.87 -0.11 -2.26 16 8 C 0.18 8.32 5.46 85.63 0.47 8.79 16 9 N -0.56 -27.24 2.73 -682.35 -1.86 -29.11 16 10 C -0.26 -13.67 8.47 84.03 0.71 -12.95 16 11 H 0.05 2.83 6.75 -2.91 -0.02 2.81 16 12 C -0.02 -1.30 4.98 84.86 0.42 -0.88 16 13 N -0.91 -50.69 11.50 21.65 0.25 -50.44 16 14 Si 0.95 42.02 29.60 68.60 2.03 44.05 16 15 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 16 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 18 C 0.10 4.22 6.56 44.99 0.30 4.52 16 19 C -0.18 -7.10 9.80 30.59 0.30 -6.80 16 20 C -0.21 -8.62 10.36 30.59 0.32 -8.31 16 21 C -0.15 -5.42 9.70 22.27 0.22 -5.21 16 22 C -0.08 -2.58 9.44 22.27 0.21 -2.37 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 24 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 27 H 0.11 4.34 8.06 -2.91 -0.02 4.31 16 28 H 0.03 1.53 8.02 -2.39 -0.02 1.51 16 29 H 0.08 4.07 5.54 -2.39 -0.01 4.05 16 30 H 0.25 13.61 8.32 -92.70 -0.77 12.83 16 31 H 0.10 3.96 8.14 -2.39 -0.02 3.94 16 32 H 0.08 3.38 6.46 -2.39 -0.02 3.36 16 33 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 34 H 0.10 3.44 8.14 -2.38 -0.02 3.42 16 35 H 0.06 2.81 8.14 -2.38 -0.02 2.79 16 36 H 0.11 4.06 8.06 -2.91 -0.02 4.04 16 37 H 0.11 3.82 7.45 -2.91 -0.02 3.79 16 Total: -1.00 -73.57 325.94 2.75 -70.81 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 1.05 Total: 22.28 kcal Atomic # 6 Polarization: -54.50 SS G_CDS: 4.60 Total: -49.90 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -1.61 Total: -79.55 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -2.52 Total: -33.30 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: 26.41 SS G_CDS: -0.80 Total: 25.61 kcal Total: -73.57 2.75 -70.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352738827.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.541 kcal (2) G-P(sol) polarization free energy of solvation -73.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds