Wall clock time and date at job start Wed Apr 15 2020 11:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00223 * 2 1 4 4 H 1.48496 * 109.47468 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47070 * 300.00678 * 3 2 1 6 6 H 1.48506 * 109.46987 * 60.00130 * 3 2 1 7 7 C 1.37880 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00164 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99748 * 359.97438 * 7 2 1 10 10 C 1.53513 * 114.16965 * 180.02562 * 9 7 2 11 11 N 1.47478 * 87.92970 * 139.66992 * 10 9 7 12 12 C 1.46902 * 110.99577 * 221.29504 * 11 10 9 13 13 C 1.53001 * 109.47099 * 170.00180 * 12 11 10 14 14 C 1.52999 * 109.47484 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47280 * 180.02562 * 14 13 12 16 16 C 1.38233 * 120.00786 * 100.00062 * 15 14 13 17 17 C 1.38222 * 120.01182 * 180.02562 * 16 15 14 18 18 C 1.38258 * 120.02654 * 359.95719 * 17 16 15 19 19 C 1.38195 * 120.01593 * 0.02562 * 18 17 16 20 20 C 1.38328 * 120.00405 * 279.99547 * 15 14 13 21 21 Cl 1.73607 * 120.01190 * 0.02562 * 20 15 14 22 22 C 1.47478 * 87.84114 * 332.98752 * 11 10 9 23 23 H 0.97001 * 119.99744 * 359.97438 * 1 2 3 24 24 H 1.08994 * 113.25540 * 47.04834 * 9 7 2 25 25 H 1.08999 * 113.47802 * 24.90108 * 10 9 7 26 26 H 1.08999 * 113.47238 * 254.43960 * 10 9 7 27 27 H 1.08997 * 109.47184 * 50.00611 * 12 11 10 28 28 H 1.09000 * 109.47465 * 289.99718 * 12 11 10 29 29 H 1.09010 * 109.47266 * 59.99865 * 13 12 11 30 30 H 1.09001 * 109.47321 * 300.00146 * 13 12 11 31 31 H 1.08996 * 109.46877 * 59.99779 * 14 13 12 32 32 H 1.09007 * 109.47048 * 299.99936 * 14 13 12 33 33 H 1.08003 * 119.99514 * 0.02562 * 16 15 14 34 34 H 1.08001 * 119.98363 * 179.97438 * 17 16 15 35 35 H 1.07995 * 119.99588 * 180.02562 * 18 17 16 36 36 H 1.07992 * 120.00897 * 179.73075 * 19 18 17 37 37 H 1.08993 * 113.48076 * 141.77642 * 22 11 10 38 38 H 1.08996 * 113.47722 * 272.24792 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.1497 -3.7438 -0.0005 11 7 1.2076 -4.3583 0.9533 12 6 1.9261 -5.0862 2.0078 13 6 0.9426 -5.4949 3.1063 14 6 1.6907 -6.2536 4.2043 15 6 0.7218 -6.6567 5.2859 16 6 0.2274 -7.9470 5.3254 17 6 -0.6617 -8.3167 6.3171 18 6 -1.0563 -7.3965 7.2705 19 6 -0.5625 -6.1064 7.2323 20 6 0.3271 -5.7356 6.2394 21 17 0.9472 -4.1148 6.1901 22 6 0.8556 -2.9966 1.3969 23 1 -0.4850 0.8401 0.0004 24 1 0.4447 -2.5305 -0.7332 25 1 3.1391 -3.5651 0.4204 26 1 2.1864 -4.2528 -0.9637 27 1 2.6977 -4.4437 2.4318 28 1 2.3881 -5.9778 1.5838 29 1 0.1708 -6.1375 2.6823 30 1 0.4804 -4.6035 3.5303 31 1 2.4626 -5.6115 4.6283 32 1 2.1524 -7.1452 3.7799 33 1 0.5359 -8.6664 4.5812 34 1 -1.0480 -9.3248 6.3473 35 1 -1.7507 -7.6860 8.0454 36 1 -0.8742 -5.3866 7.9746 37 1 -0.2044 -2.8724 1.6181 38 1 1.4996 -2.6185 2.1908 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208872231.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:41 Heat of formation + Delta-G solvation = 35.540711 kcal Electronic energy + Delta-G solvation = -18786.146916 eV Core-core repulsion = 15847.634327 eV Total energy + Delta-G solvation = -2938.512589 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.67001 -38.85915 -36.45109 -34.82024 -32.63500 -31.08599 -30.78631 -28.05589 -25.55869 -24.75276 -23.31195 -22.87293 -21.29437 -20.55633 -18.56274 -17.19178 -16.59381 -15.98522 -15.54253 -14.86676 -14.60688 -14.36819 -14.09877 -13.93515 -13.74657 -13.28129 -13.05360 -12.23362 -12.00471 -11.89949 -11.63391 -11.53040 -11.44617 -11.38847 -11.05645 -10.94830 -10.75644 -10.56357 -10.44866 -10.09823 -9.65800 -9.16752 -9.03927 -8.88191 -8.73881 -8.40913 -7.92542 -6.02667 -4.06820 0.99005 1.08535 2.11858 3.29307 3.37507 3.41131 3.44289 4.41988 4.51456 4.59348 4.74674 4.97126 5.04131 5.15176 5.26263 5.29741 5.37902 5.51435 5.60919 5.71955 5.77526 5.93163 6.03689 6.07443 6.13095 6.18359 6.24875 6.37533 6.46056 6.56480 6.59007 6.62533 6.72712 6.84511 7.20284 7.25012 7.76330 7.95204 8.15471 8.41249 8.96457 9.57925 11.07007 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024478 B = 0.003758 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.615069 B = 7449.678029 C = 8106.669685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.040 3.960 10 C -0.006 4.006 11 N -0.486 5.486 12 C 0.024 3.976 13 C -0.106 4.106 14 C -0.084 4.084 15 C -0.064 4.064 16 C -0.107 4.107 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.110 4.110 20 C -0.035 4.035 21 Cl -0.060 7.060 22 C 0.007 3.993 23 H 0.261 0.739 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.061 0.939 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.001 -15.537 14.177 21.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.076 0.924 9 C 0.021 3.979 10 C -0.134 4.134 11 N -0.208 5.208 12 C -0.105 4.105 13 C -0.144 4.144 14 C -0.122 4.122 15 C -0.065 4.065 16 C -0.126 4.126 17 C -0.134 4.134 18 C -0.136 4.136 19 C -0.129 4.129 20 C -0.062 4.062 21 Cl -0.031 7.031 22 C -0.122 4.122 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.080 0.920 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.605 -15.762 13.960 21.064 hybrid contribution 1.091 1.519 0.551 1.950 sum 0.486 -14.243 14.511 20.339 Atomic orbital electron populations 1.69983 1.05969 1.26563 1.49826 1.25017 0.94813 0.99122 0.94673 0.86581 0.80193 0.83865 0.77638 1.19733 1.20903 1.21005 1.21085 0.92756 0.90328 1.51185 0.92449 1.20110 0.94293 0.90826 0.92680 1.23989 0.95735 0.97742 0.95966 1.68865 1.27334 1.14301 1.10317 1.22561 0.95650 0.98826 0.93455 1.21456 0.98361 1.00385 0.94206 1.20693 0.96512 1.01105 0.93913 1.19872 0.98227 0.92909 0.95524 1.21065 0.97494 0.95185 0.98814 1.21227 0.97526 0.99796 0.94843 1.21076 1.00268 0.92829 0.99432 1.21068 0.96744 0.97112 0.97949 1.20921 0.99975 0.87059 0.98233 1.98402 1.86214 1.20405 1.98072 1.23979 1.00019 0.87001 1.01156 0.92958 0.91855 0.92929 0.92154 0.94696 0.91976 0.91486 0.91263 0.90406 0.90731 0.85144 0.85566 0.85359 0.85082 0.92012 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.93 13.26 55.43 0.74 -25.19 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.28 8.82 -34.44 -0.30 -14.58 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.04 1.02 3.77 -91.23 -0.34 0.68 16 10 C -0.01 -0.12 7.27 -7.54 -0.05 -0.18 16 11 N -0.49 -10.09 6.41 -244.62 -1.57 -11.66 16 12 C 0.02 0.41 4.82 -3.82 -0.02 0.39 16 13 C -0.11 -1.61 5.25 -26.73 -0.14 -1.75 16 14 C -0.08 -1.04 4.80 -27.88 -0.13 -1.17 16 15 C -0.06 -0.77 5.14 -104.59 -0.54 -1.30 16 16 C -0.11 -1.08 9.67 -39.59 -0.38 -1.46 16 17 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 18 C -0.12 -1.04 10.05 -39.59 -0.40 -1.44 16 19 C -0.11 -1.15 9.83 -39.55 -0.39 -1.54 16 20 C -0.04 -0.43 6.31 -39.50 -0.25 -0.68 16 21 Cl -0.06 -0.81 26.63 -51.86 -1.38 -2.19 16 22 C 0.01 0.17 6.57 -7.53 -0.05 0.12 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.06 1.78 8.11 -51.93 -0.42 1.35 16 25 H 0.05 1.12 7.72 -51.93 -0.40 0.72 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.03 0.61 7.56 -51.93 -0.39 0.22 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 30 H 0.07 1.17 6.79 -51.93 -0.35 0.82 16 31 H 0.08 0.98 7.36 -51.93 -0.38 0.60 16 32 H 0.07 0.79 8.00 -51.93 -0.42 0.37 16 33 H 0.13 1.07 8.04 -52.48 -0.42 0.65 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 36 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.05 1.24 7.66 -51.93 -0.40 0.84 16 LS Contribution 329.07 15.07 4.96 4.96 Total: -1.00 -29.43 329.07 -11.46 -40.89 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.69 Total: -0.57 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -3.50 Total: -22.55 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.83 Total: -36.85 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.38 Total: -2.19 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.43 -11.46 -40.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208872231.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.429 kcal (2) G-P(sol) polarization free energy of solvation -29.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds