Wall clock time and date at job start Wed Apr 15 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00223 * 2 1 4 4 H 1.48496 * 109.47468 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47070 * 300.00678 * 3 2 1 6 6 H 1.48506 * 109.46987 * 60.00130 * 3 2 1 7 7 C 1.37880 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00164 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99748 * 359.97438 * 7 2 1 10 10 C 1.53513 * 114.16965 * 180.02562 * 9 7 2 11 11 N 1.47478 * 87.92970 * 139.66992 * 10 9 7 12 12 C 1.46902 * 110.99577 * 221.29504 * 11 10 9 13 13 C 1.53001 * 109.47099 * 170.00180 * 12 11 10 14 14 C 1.52999 * 109.47484 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47280 * 180.02562 * 14 13 12 16 16 C 1.38233 * 120.00786 * 100.00062 * 15 14 13 17 17 C 1.38222 * 120.01182 * 180.02562 * 16 15 14 18 18 C 1.38258 * 120.02654 * 359.95719 * 17 16 15 19 19 C 1.38195 * 120.01593 * 0.02562 * 18 17 16 20 20 C 1.38328 * 120.00405 * 279.99547 * 15 14 13 21 21 Cl 1.73607 * 120.01190 * 0.02562 * 20 15 14 22 22 C 1.47478 * 87.84114 * 332.98752 * 11 10 9 23 23 H 0.97001 * 119.99744 * 359.97438 * 1 2 3 24 24 H 1.08994 * 113.25540 * 47.04834 * 9 7 2 25 25 H 1.08999 * 113.47802 * 24.90108 * 10 9 7 26 26 H 1.08999 * 113.47238 * 254.43960 * 10 9 7 27 27 H 1.08997 * 109.47184 * 50.00611 * 12 11 10 28 28 H 1.09000 * 109.47465 * 289.99718 * 12 11 10 29 29 H 1.09010 * 109.47266 * 59.99865 * 13 12 11 30 30 H 1.09001 * 109.47321 * 300.00146 * 13 12 11 31 31 H 1.08996 * 109.46877 * 59.99779 * 14 13 12 32 32 H 1.09007 * 109.47048 * 299.99936 * 14 13 12 33 33 H 1.08003 * 119.99514 * 0.02562 * 16 15 14 34 34 H 1.08001 * 119.98363 * 179.97438 * 17 16 15 35 35 H 1.07995 * 119.99588 * 180.02562 * 18 17 16 36 36 H 1.07992 * 120.00897 * 179.73075 * 19 18 17 37 37 H 1.08993 * 113.48076 * 141.77642 * 22 11 10 38 38 H 1.08996 * 113.47722 * 272.24792 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.1497 -3.7438 -0.0005 11 7 1.2076 -4.3583 0.9533 12 6 1.9261 -5.0862 2.0078 13 6 0.9426 -5.4949 3.1063 14 6 1.6907 -6.2536 4.2043 15 6 0.7218 -6.6567 5.2859 16 6 0.2274 -7.9470 5.3254 17 6 -0.6617 -8.3167 6.3171 18 6 -1.0563 -7.3965 7.2705 19 6 -0.5625 -6.1064 7.2323 20 6 0.3271 -5.7356 6.2394 21 17 0.9472 -4.1148 6.1901 22 6 0.8556 -2.9966 1.3969 23 1 -0.4850 0.8401 0.0004 24 1 0.4447 -2.5305 -0.7332 25 1 3.1391 -3.5651 0.4204 26 1 2.1864 -4.2528 -0.9637 27 1 2.6977 -4.4437 2.4318 28 1 2.3881 -5.9778 1.5838 29 1 0.1708 -6.1375 2.6823 30 1 0.4804 -4.6035 3.5303 31 1 2.4626 -5.6115 4.6283 32 1 2.1524 -7.1452 3.7799 33 1 0.5359 -8.6664 4.5812 34 1 -1.0480 -9.3248 6.3473 35 1 -1.7507 -7.6860 8.0454 36 1 -0.8742 -5.3866 7.9746 37 1 -0.2044 -2.8724 1.6181 38 1 1.4996 -2.6185 2.1908 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208872231.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:40 Heat of formation + Delta-G solvation = 19.067843 kcal Electronic energy + Delta-G solvation = -18786.861233 eV Core-core repulsion = 15847.634327 eV Total energy + Delta-G solvation = -2939.226906 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.79458 -40.29459 -37.38020 -35.98886 -34.61125 -32.26928 -31.61569 -29.58081 -27.18394 -26.58679 -24.79650 -23.63258 -22.47303 -21.73196 -20.47212 -18.68649 -17.92442 -16.95172 -16.77048 -16.33659 -16.28701 -15.80744 -15.53324 -15.02832 -14.71623 -14.43999 -14.24422 -13.81418 -13.51571 -13.25243 -13.09144 -12.88860 -12.71547 -12.57881 -12.43281 -12.36355 -12.28881 -12.02768 -11.73748 -11.50288 -11.39187 -11.09670 -10.83856 -10.51515 -9.83282 -9.68926 -9.58545 -8.16576 -6.27972 0.20988 0.32809 1.22544 1.39946 1.41356 1.53322 2.40967 2.68214 3.12682 3.32315 3.68820 3.81369 3.99450 4.16258 4.17747 4.25754 4.39400 4.44078 4.45451 4.50153 4.58429 4.68316 4.73109 4.76696 4.87352 4.90895 4.96364 5.05520 5.13507 5.21746 5.31339 5.34626 5.47639 5.50637 5.56583 5.61411 5.84146 5.91331 6.28886 6.41411 6.81590 7.40506 8.93538 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024478 B = 0.003758 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.615069 B = 7449.678029 C = 8106.669685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.958 3.042 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.019 3.981 10 C 0.009 3.991 11 N -0.484 5.484 12 C 0.024 3.976 13 C -0.097 4.097 14 C -0.075 4.075 15 C -0.085 4.085 16 C -0.111 4.111 17 C -0.113 4.113 18 C -0.114 4.114 19 C -0.122 4.122 20 C -0.056 4.056 21 Cl -0.085 7.085 22 C 0.022 3.978 23 H 0.263 0.737 24 H 0.030 0.970 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.030 0.970 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.140 0.860 37 H 0.040 0.960 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.643 -17.397 14.995 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.783 3.217 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.569 4.569 8 H 0.077 0.923 9 C 0.000 4.000 10 C -0.119 4.119 11 N -0.206 5.206 12 C -0.104 4.104 13 C -0.135 4.135 14 C -0.113 4.113 15 C -0.085 4.085 16 C -0.129 4.129 17 C -0.131 4.131 18 C -0.132 4.132 19 C -0.141 4.141 20 C -0.083 4.083 21 Cl -0.056 7.056 22 C -0.107 4.107 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.049 0.951 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.168 0.832 34 H 0.175 0.825 35 H 0.175 0.825 36 H 0.157 0.843 37 H 0.059 0.941 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.049 -17.639 14.779 23.012 hybrid contribution 0.830 1.981 0.323 2.172 sum 0.879 -15.658 15.103 21.772 Atomic orbital electron populations 1.70108 1.07558 1.27514 1.50916 1.25848 0.95626 1.02764 0.94313 0.85512 0.79190 0.79340 0.77679 1.18735 1.20335 1.20711 1.21414 0.92997 0.91505 1.50955 0.92292 1.20072 0.94594 0.92227 0.93066 1.23820 0.95335 0.95697 0.97077 1.68798 1.27913 1.12658 1.11214 1.22657 0.95731 0.99059 0.92995 1.21338 0.98044 0.99704 0.94398 1.20570 0.96175 1.01358 0.93173 1.19937 0.99061 0.93885 0.95655 1.21368 0.97349 0.94612 0.99581 1.21640 0.96467 1.01151 0.93837 1.21473 0.99902 0.91930 0.99929 1.21311 0.96602 0.98332 0.97828 1.21152 1.01299 0.86177 0.99643 1.98386 1.86662 1.22326 1.98196 1.23661 0.98498 0.88916 0.99673 0.92852 0.95135 0.92154 0.90610 0.95148 0.89372 0.91598 0.93708 0.91204 0.88505 0.83191 0.82496 0.82489 0.84260 0.94098 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.32 13.26 21.45 0.28 -55.04 16 2 C 0.01 0.78 5.46 84.65 0.46 1.24 16 3 Si 0.96 44.08 29.54 68.60 2.03 46.10 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 7 C -0.53 -29.79 8.82 25.60 0.23 -29.56 16 8 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 9 C 0.02 1.02 3.77 -11.19 -0.04 0.98 16 10 C 0.01 0.40 7.27 83.58 0.61 1.01 16 11 N -0.48 -19.93 6.41 -927.84 -5.95 -25.88 16 12 C 0.02 0.79 4.82 86.30 0.42 1.21 16 13 C -0.10 -2.87 5.25 30.59 0.16 -2.71 16 14 C -0.08 -1.75 4.80 29.85 0.14 -1.60 16 15 C -0.08 -1.91 5.14 -19.84 -0.10 -2.01 16 16 C -0.11 -1.93 9.67 22.26 0.22 -1.71 16 17 C -0.11 -1.60 10.05 22.27 0.22 -1.38 16 18 C -0.11 -1.71 10.05 22.26 0.22 -1.49 16 19 C -0.12 -2.41 9.83 22.29 0.22 -2.19 16 20 C -0.06 -1.36 6.31 22.32 0.14 -1.22 16 21 Cl -0.08 -2.35 26.63 -2.72 -0.07 -2.42 16 22 C 0.02 1.07 6.57 83.58 0.55 1.61 16 23 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 24 H 0.03 1.79 8.11 -2.39 -0.02 1.77 16 25 H 0.06 2.49 7.72 -2.39 -0.02 2.47 16 26 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 27 H 0.03 1.04 7.56 -2.39 -0.02 1.02 16 28 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.04 1.54 6.79 -2.39 -0.02 1.53 16 31 H 0.07 1.73 7.36 -2.39 -0.02 1.71 16 32 H 0.10 1.79 8.00 -2.38 -0.02 1.77 16 33 H 0.15 1.94 8.04 -2.91 -0.02 1.91 16 34 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.04 2.19 7.66 -2.39 -0.02 2.17 16 Total: -1.00 -64.49 329.07 0.76 -63.73 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.03 Total: 11.33 kcal Atomic # 6 Polarization: -41.26 SS G_CDS: 3.44 Total: -37.82 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -5.67 Total: -80.92 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -0.07 Total: -2.42 kcal Total: -64.49 0.76 -63.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208872231.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.795 kcal (2) G-P(sol) polarization free energy of solvation -64.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds