Wall clock time and date at job start Wed Apr 15 2020 11:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39579 * 120.45876 * 313.23891 * 3 2 1 5 5 C 1.37712 * 120.18635 * 180.02562 * 4 3 2 6 6 C 1.39816 * 121.16992 * 359.97438 * 5 4 3 7 7 C 1.48329 * 119.53533 * 180.02562 * 6 5 4 8 8 C 1.39379 * 120.53891 * 179.71814 * 7 6 5 9 9 N 1.31716 * 120.58791 * 180.29777 * 8 7 6 10 10 C 1.31923 * 121.85625 * 359.95228 * 9 8 7 11 11 C 1.38275 * 121.03632 * 0.05224 * 10 9 8 12 12 C 1.50702 * 120.35391 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46931 * 270.01652 * 12 11 10 14 14 C 1.38451 * 119.29312 * 359.97231 * 11 10 9 15 15 C 1.38598 * 120.93241 * 0.29569 * 6 5 4 16 16 C 1.40617 * 119.72845 * 359.45650 * 15 6 5 17 17 C 1.40837 * 120.55367 * 180.26648 * 16 15 6 18 18 H 1.07997 * 120.00159 * 204.64554 * 17 16 15 19 19 C 1.40238 * 120.00146 * 24.64649 * 17 16 15 20 20 N 1.30660 * 119.99735 * 17.29647 * 19 17 16 21 21 Si 1.86799 * 120.00400 * 197.29839 * 19 17 16 22 22 H 1.48502 * 109.46973 * 59.99899 * 21 19 17 23 23 H 1.48494 * 109.47008 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46996 * 299.99911 * 21 19 17 25 25 H 1.08003 * 119.90686 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.41917 * 179.97438 * 5 4 3 27 27 H 1.08001 * 119.70989 * 0.25421 * 8 7 6 28 28 H 1.07997 * 119.47733 * 180.02562 * 10 9 8 29 29 H 1.09004 * 109.47010 * 30.01831 * 12 11 10 30 30 H 1.08999 * 109.47059 * 150.01977 * 12 11 10 31 31 H 1.00901 * 110.99683 * 179.97438 * 13 12 11 32 32 H 1.00891 * 111.00361 * 303.95087 * 13 12 11 33 33 H 1.08002 * 120.84540 * 179.97438 * 14 11 10 34 34 H 1.08000 * 120.13818 * 179.72883 * 15 6 5 35 35 H 0.96999 * 120.00459 * 184.59202 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2759 -0.8233 0.8765 5 6 4.6530 -0.8178 0.8721 6 6 5.3706 0.0044 -0.0019 7 6 6.8535 -0.0191 0.0238 8 6 7.5897 0.7876 -0.8423 9 7 8.9065 0.7632 -0.8243 10 6 9.5773 -0.0146 0.0037 11 6 8.9195 -0.8439 0.8934 12 6 9.7012 -1.7266 1.8321 13 7 9.9502 -3.0244 1.1904 14 6 7.5352 -0.8547 0.9127 15 6 4.7160 0.8452 -0.8881 16 6 3.3103 0.8666 -0.9200 17 6 2.6273 1.7101 -1.8175 18 1 1.6202 2.0315 -1.5964 19 6 3.2548 2.1327 -2.9983 20 7 4.3100 1.5009 -3.4395 21 14 2.5823 3.5988 -3.9404 22 1 2.6092 4.8014 -3.0696 23 1 3.4182 3.8396 -5.1439 24 1 1.1843 3.3205 -4.3569 25 1 2.7422 -1.4663 1.5607 26 1 5.1883 -1.4599 1.5559 27 1 7.0759 1.4379 -1.5347 28 1 10.6570 -0.0037 -0.0141 29 1 10.6524 -1.2508 2.0707 30 1 9.1305 -1.8778 2.7483 31 1 10.4736 -3.6346 1.8001 32 1 9.0856 -3.4566 0.9012 33 1 6.9959 -1.4930 1.5970 34 1 5.2831 1.4782 -1.5546 35 1 4.7835 1.8325 -4.2184 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239798242.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:45 Heat of formation + Delta-G solvation = 68.683012 kcal Electronic energy + Delta-G solvation = -19889.425109 eV Core-core repulsion = 16851.242184 eV Total energy + Delta-G solvation = -3038.182925 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.00411 -37.76202 -35.37768 -35.11050 -34.31713 -32.49154 -31.06810 -30.05423 -28.61648 -26.11229 -25.15701 -23.68412 -22.55757 -20.89779 -20.39152 -17.95981 -17.25122 -16.69127 -16.26371 -16.01756 -15.40073 -14.81729 -14.52312 -13.85719 -13.50470 -13.43549 -13.34434 -13.03130 -12.83059 -12.70606 -12.52884 -12.30790 -11.82124 -11.63620 -11.45275 -11.30016 -11.19358 -11.08823 -10.71917 -10.21442 -9.89794 -9.67967 -9.44230 -9.15996 -8.93739 -8.75028 -7.87918 -7.38376 -7.14229 -4.80696 1.09725 1.50619 2.33306 2.58438 2.89818 2.92125 3.03349 3.65750 3.85265 3.88750 4.32407 4.38913 4.59431 4.72566 4.88026 4.96366 5.20698 5.28600 5.34069 5.40442 5.47152 5.48528 5.80480 5.96939 6.03477 6.23746 6.41485 6.44413 6.63434 6.75781 6.83028 6.88692 7.02772 7.11426 7.23826 7.36807 7.55306 7.64069 7.76360 8.09105 8.32167 8.34193 8.43255 8.76191 9.67935 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.005134 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.480484 B = 5452.645823 C = 6882.576507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.299 3.701 3 C -0.185 4.185 4 C -0.026 4.026 5 C -0.238 4.238 6 C -0.019 4.019 7 C -0.066 4.066 8 C 0.106 3.894 9 N -0.485 5.485 10 C 0.098 3.902 11 C -0.143 4.143 12 C 0.110 3.890 13 N -0.847 5.847 14 C -0.072 4.072 15 C -0.139 4.139 16 C 0.149 3.851 17 C -0.426 4.426 18 H 0.087 0.913 19 C 0.077 3.923 20 N -0.763 5.763 21 Si 0.914 3.086 22 H -0.257 1.257 23 H -0.272 1.272 24 H -0.260 1.260 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.163 0.837 28 H 0.147 0.853 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.341 0.659 32 H 0.344 0.656 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.940 -2.962 5.541 12.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.010 4.010 3 C -0.191 4.191 4 C -0.047 4.047 5 C -0.258 4.258 6 C -0.021 4.021 7 C -0.068 4.068 8 C -0.052 4.052 9 N -0.192 5.192 10 C -0.059 4.059 11 C -0.145 4.145 12 C -0.021 4.021 13 N -0.377 5.377 14 C -0.099 4.099 15 C -0.158 4.158 16 C 0.144 3.856 17 C -0.453 4.453 18 H 0.105 0.895 19 C -0.147 4.147 20 N -0.385 5.385 21 Si 0.737 3.263 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.184 1.184 25 H 0.119 0.881 26 H 0.116 0.884 27 H 0.180 0.820 28 H 0.165 0.835 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.205 -2.054 4.179 11.217 hybrid contribution -0.824 -0.435 0.869 1.274 sum 9.381 -2.489 5.047 10.940 Atomic orbital electron populations 1.81026 1.12740 1.12449 1.12550 1.25786 0.92723 0.91384 0.91152 1.16969 0.83276 1.08634 1.10243 1.20362 0.93517 0.95357 0.95449 1.20063 0.93066 1.07204 1.05430 1.18350 0.88949 0.97786 0.97025 1.20077 0.94760 0.96170 0.95774 1.23122 0.88992 0.96570 0.96487 1.67672 1.09490 1.20563 1.21486 1.22501 0.99852 0.92237 0.91344 1.20609 0.94064 0.99881 0.99979 1.20565 0.98818 0.89571 0.93170 1.58705 1.26626 1.05651 1.46708 1.21568 0.93016 0.97503 0.97773 1.21420 0.93866 1.01013 0.99456 1.18330 0.91125 0.87559 0.88636 1.19780 1.01577 1.22624 1.01290 0.89530 1.26098 0.94416 0.97027 0.97115 1.69685 1.14995 1.33351 1.20454 0.86216 0.80301 0.80912 0.78878 1.18154 1.19634 1.18442 0.88139 0.88388 0.82034 0.83518 0.90135 0.94605 0.84636 0.84322 0.85049 0.85009 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.09 18.54 41.84 0.78 -11.32 16 2 C 0.30 6.90 14.28 -22.47 -0.32 6.57 16 3 C -0.19 -4.13 5.95 -104.13 -0.62 -4.75 16 4 C -0.03 -0.51 9.74 -39.27 -0.38 -0.89 16 5 C -0.24 -4.44 9.38 -39.18 -0.37 -4.81 16 6 C -0.02 -0.38 5.86 -105.02 -0.62 -1.00 16 7 C -0.07 -1.16 5.89 -104.75 -0.62 -1.78 16 8 C 0.11 1.88 10.58 -17.18 -0.18 1.70 16 9 N -0.48 -8.25 10.35 -12.96 -0.13 -8.39 16 10 C 0.10 1.42 10.85 -17.50 -0.19 1.23 16 11 C -0.14 -1.90 5.41 -104.53 -0.56 -2.46 16 12 C 0.11 1.08 6.93 -4.97 -0.03 1.05 16 13 N -0.85 -7.90 9.61 -11.41 -0.11 -8.01 16 14 C -0.07 -1.07 9.20 -38.93 -0.36 -1.43 16 15 C -0.14 -3.03 8.07 -38.55 -0.31 -3.34 16 16 C 0.15 3.49 5.73 -104.67 -0.60 2.89 16 17 C -0.43 -10.11 8.58 -37.85 -0.32 -10.44 16 18 H 0.09 2.09 7.37 -52.49 -0.39 1.70 16 19 C 0.08 1.69 5.16 -17.30 -0.09 1.60 16 20 N -0.76 -16.91 10.94 55.56 0.61 -16.31 16 21 Si 0.91 16.86 29.60 -169.99 -5.03 11.83 16 22 H -0.26 -4.72 7.11 56.52 0.40 -4.31 16 23 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 24 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 25 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 26 H 0.10 1.56 6.16 -52.49 -0.32 1.23 16 27 H 0.16 2.91 6.17 -52.49 -0.32 2.59 16 28 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 30 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 31 H 0.34 2.34 9.08 -39.29 -0.36 1.98 16 32 H 0.34 3.23 8.98 -39.30 -0.35 2.88 16 33 H 0.13 1.72 6.25 -52.49 -0.33 1.39 16 34 H 0.13 2.88 4.27 -52.49 -0.22 2.66 16 35 H 0.29 5.89 8.30 -40.82 -0.34 5.55 16 LS Contribution 310.87 15.07 4.68 4.68 Total: -1.00 -25.93 310.87 -7.90 -33.83 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -3.12 Total: 9.55 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -5.58 Total: -15.87 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 1.14 Total: -44.02 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -25.93 -7.90 -33.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239798242.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.510 kcal (2) G-P(sol) polarization free energy of solvation -25.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds