Wall clock time and date at job start Wed Apr 15 2020 11:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39579 * 120.45876 * 313.23891 * 3 2 1 5 5 C 1.37712 * 120.18635 * 180.02562 * 4 3 2 6 6 C 1.39816 * 121.16992 * 359.97438 * 5 4 3 7 7 C 1.48329 * 119.53533 * 180.02562 * 6 5 4 8 8 C 1.39379 * 120.53891 * 179.71814 * 7 6 5 9 9 N 1.31716 * 120.58791 * 180.29777 * 8 7 6 10 10 C 1.31923 * 121.85625 * 359.95228 * 9 8 7 11 11 C 1.38275 * 121.03632 * 0.05224 * 10 9 8 12 12 C 1.50702 * 120.35391 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46931 * 270.01652 * 12 11 10 14 14 C 1.38451 * 119.29312 * 359.97231 * 11 10 9 15 15 C 1.38598 * 120.93241 * 0.29569 * 6 5 4 16 16 C 1.40617 * 119.72845 * 359.45650 * 15 6 5 17 17 C 1.40837 * 120.55367 * 180.26648 * 16 15 6 18 18 H 1.07997 * 120.00159 * 204.64554 * 17 16 15 19 19 C 1.40238 * 120.00146 * 24.64649 * 17 16 15 20 20 N 1.30660 * 119.99735 * 17.29647 * 19 17 16 21 21 Si 1.86799 * 120.00400 * 197.29839 * 19 17 16 22 22 H 1.48502 * 109.46973 * 59.99899 * 21 19 17 23 23 H 1.48494 * 109.47008 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46996 * 299.99911 * 21 19 17 25 25 H 1.08003 * 119.90686 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.41917 * 179.97438 * 5 4 3 27 27 H 1.08001 * 119.70989 * 0.25421 * 8 7 6 28 28 H 1.07997 * 119.47733 * 180.02562 * 10 9 8 29 29 H 1.09004 * 109.47010 * 30.01831 * 12 11 10 30 30 H 1.08999 * 109.47059 * 150.01977 * 12 11 10 31 31 H 1.00901 * 110.99683 * 179.97438 * 13 12 11 32 32 H 1.00891 * 111.00361 * 303.95087 * 13 12 11 33 33 H 1.08002 * 120.84540 * 179.97438 * 14 11 10 34 34 H 1.08000 * 120.13818 * 179.72883 * 15 6 5 35 35 H 0.96999 * 120.00459 * 184.59202 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2759 -0.8233 0.8765 5 6 4.6530 -0.8178 0.8721 6 6 5.3706 0.0044 -0.0019 7 6 6.8535 -0.0191 0.0238 8 6 7.5897 0.7876 -0.8423 9 7 8.9065 0.7632 -0.8243 10 6 9.5773 -0.0146 0.0037 11 6 8.9195 -0.8439 0.8934 12 6 9.7012 -1.7266 1.8321 13 7 9.9502 -3.0244 1.1904 14 6 7.5352 -0.8547 0.9127 15 6 4.7160 0.8452 -0.8881 16 6 3.3103 0.8666 -0.9200 17 6 2.6273 1.7101 -1.8175 18 1 1.6202 2.0315 -1.5964 19 6 3.2548 2.1327 -2.9983 20 7 4.3100 1.5009 -3.4395 21 14 2.5823 3.5988 -3.9404 22 1 2.6092 4.8014 -3.0696 23 1 3.4182 3.8396 -5.1439 24 1 1.1843 3.3205 -4.3569 25 1 2.7422 -1.4663 1.5607 26 1 5.1883 -1.4599 1.5559 27 1 7.0759 1.4379 -1.5347 28 1 10.6570 -0.0037 -0.0141 29 1 10.6524 -1.2508 2.0707 30 1 9.1305 -1.8778 2.7483 31 1 10.4736 -3.6346 1.8001 32 1 9.0856 -3.4566 0.9012 33 1 6.9959 -1.4930 1.5970 34 1 5.2831 1.4782 -1.5546 35 1 4.7835 1.8325 -4.2184 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239798242.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:43 Heat of formation + Delta-G solvation = 54.023404 kcal Electronic energy + Delta-G solvation = -19890.060797 eV Core-core repulsion = 16851.242184 eV Total energy + Delta-G solvation = -3038.818613 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.24847 -39.34284 -37.05788 -36.11997 -35.92998 -33.93738 -32.16774 -31.65522 -30.06046 -27.70645 -26.22733 -25.05929 -23.86847 -22.46946 -21.66706 -19.59268 -18.84127 -17.93402 -17.43551 -17.27880 -16.67858 -16.05834 -15.58700 -15.38425 -15.04587 -14.66139 -14.56230 -14.45271 -14.37442 -14.15087 -13.85659 -13.49319 -13.41426 -13.34242 -13.08065 -12.80620 -12.70266 -12.44277 -12.16400 -11.77810 -11.48306 -11.24853 -10.81231 -10.35552 -10.17799 -9.53309 -9.52390 -8.97198 -8.72545 -6.54962 -0.29672 0.31494 0.81465 0.99837 1.36010 1.45805 1.52817 2.03290 2.12531 2.33903 2.65625 2.98286 3.50769 3.60256 3.68947 3.81571 3.85723 3.99962 4.06323 4.13289 4.27205 4.45771 4.60843 4.68810 4.87393 4.93005 4.94370 5.09724 5.17941 5.27016 5.31994 5.47492 5.70847 5.85233 5.90938 6.04829 6.13049 6.23325 6.41273 6.63832 6.65052 6.75290 6.96261 7.08768 8.06384 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.005134 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.480484 B = 5452.645823 C = 6882.576507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C 0.305 3.695 3 C -0.209 4.209 4 C -0.024 4.024 5 C -0.227 4.227 6 C -0.012 4.012 7 C -0.090 4.090 8 C 0.090 3.910 9 N -0.505 5.505 10 C 0.097 3.903 11 C -0.131 4.131 12 C 0.113 3.887 13 N -0.855 5.855 14 C -0.064 4.064 15 C -0.164 4.164 16 C 0.129 3.871 17 C -0.464 4.464 18 H 0.069 0.931 19 C 0.048 3.952 20 N -0.785 5.785 21 Si 0.972 3.028 22 H -0.256 1.256 23 H -0.256 1.256 24 H -0.268 1.268 25 H 0.130 0.870 26 H 0.137 0.863 27 H 0.145 0.855 28 H 0.174 0.826 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.357 0.643 32 H 0.344 0.656 33 H 0.156 0.844 34 H 0.124 0.876 35 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.234 -4.343 7.159 15.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.211 5.211 2 C -0.004 4.004 3 C -0.215 4.215 4 C -0.044 4.044 5 C -0.246 4.246 6 C -0.014 4.014 7 C -0.092 4.092 8 C -0.066 4.066 9 N -0.213 5.213 10 C -0.060 4.060 11 C -0.133 4.133 12 C -0.018 4.018 13 N -0.387 5.387 14 C -0.090 4.090 15 C -0.183 4.183 16 C 0.124 3.876 17 C -0.491 4.491 18 H 0.088 0.912 19 C -0.173 4.173 20 N -0.408 5.408 21 Si 0.793 3.207 22 H -0.180 1.180 23 H -0.180 1.180 24 H -0.193 1.193 25 H 0.148 0.852 26 H 0.155 0.845 27 H 0.163 0.837 28 H 0.191 0.809 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.171 0.829 32 H 0.157 0.843 33 H 0.173 0.827 34 H 0.141 0.859 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.511 -3.451 5.810 14.219 hybrid contribution -1.310 -0.136 0.489 1.405 sum 11.201 -3.587 6.299 13.342 Atomic orbital electron populations 1.81001 1.13242 1.13383 1.13470 1.26018 0.92964 0.90804 0.90576 1.17238 0.82972 1.09853 1.11422 1.20704 0.94091 0.94694 0.94937 1.20497 0.92851 1.06390 1.04861 1.18639 0.90484 0.96451 0.95796 1.19999 0.93551 0.98045 0.97576 1.22943 0.89599 0.97137 0.96943 1.67662 1.09055 1.21818 1.22801 1.23078 1.01147 0.91305 0.90512 1.20961 0.93672 0.99264 0.99440 1.20605 0.99325 0.89246 0.92605 1.58669 1.26882 1.05810 1.47371 1.21830 0.93832 0.96481 0.96873 1.21386 0.93340 1.02604 1.00996 1.18617 0.92063 0.87894 0.89018 1.19843 1.01410 1.24915 1.02955 0.91241 1.26687 0.94562 0.98840 0.97201 1.69694 1.15733 1.34283 1.21060 0.85368 0.79263 0.77995 0.78113 1.17998 1.17974 1.19284 0.85223 0.84532 0.83744 0.80875 0.88542 0.92856 0.82862 0.84344 0.82695 0.85892 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.75 18.54 19.00 0.35 -25.40 16 2 C 0.30 14.36 14.28 88.33 1.26 15.62 16 3 C -0.21 -9.45 5.95 -19.54 -0.12 -9.56 16 4 C -0.02 -0.89 9.74 22.47 0.22 -0.68 16 5 C -0.23 -7.92 9.38 22.53 0.21 -7.71 16 6 C -0.01 -0.46 5.86 -20.12 -0.12 -0.58 16 7 C -0.09 -3.06 5.89 -19.95 -0.12 -3.18 16 8 C 0.09 3.25 10.58 84.99 0.90 4.15 16 9 N -0.51 -16.77 10.35 -194.92 -2.02 -18.79 16 10 C 0.10 2.55 10.85 84.69 0.92 3.47 16 11 C -0.13 -3.00 5.41 -19.80 -0.11 -3.10 16 12 C 0.11 1.70 6.93 85.56 0.59 2.29 16 13 N -0.86 -12.40 9.61 -190.00 -1.83 -14.22 16 14 C -0.06 -1.69 9.20 22.69 0.21 -1.48 16 15 C -0.16 -7.43 8.07 22.94 0.19 -7.25 16 16 C 0.13 6.30 5.73 -19.90 -0.11 6.18 16 17 C -0.46 -23.24 8.58 23.39 0.20 -23.04 16 18 H 0.07 3.58 7.37 -2.91 -0.02 3.56 16 19 C 0.05 2.20 5.16 85.35 0.44 2.64 16 20 N -0.78 -36.20 10.94 21.88 0.24 -35.96 16 21 Si 0.97 35.62 29.60 68.60 2.03 37.65 16 22 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 23 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 24 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 25 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 26 H 0.14 3.68 6.16 -2.91 -0.02 3.66 16 27 H 0.15 5.54 6.17 -2.91 -0.02 5.53 16 28 H 0.17 3.54 8.06 -2.91 -0.02 3.51 16 29 H 0.10 1.20 8.09 -2.39 -0.02 1.18 16 30 H 0.05 0.66 8.09 -2.39 -0.02 0.64 16 31 H 0.36 3.40 9.08 -89.69 -0.81 2.59 16 32 H 0.34 5.11 8.98 -89.70 -0.81 4.30 16 33 H 0.16 3.28 6.25 -2.91 -0.02 3.27 16 34 H 0.12 5.70 4.27 -2.91 -0.01 5.69 16 35 H 0.30 12.47 8.30 -92.71 -0.77 11.70 16 Total: -1.00 -57.97 310.87 2.90 -55.07 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -0.44 Total: 23.88 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 4.57 Total: -22.23 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -3.25 Total: -94.37 kcal Atomic # 14 Polarization: 35.62 SS G_CDS: 2.03 Total: 37.65 kcal Total: -57.97 2.90 -55.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239798242.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.090 kcal (2) G-P(sol) polarization free energy of solvation -57.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds