Wall clock time and date at job start Wed Apr 15 2020 11:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99816 * 2 1 4 4 H 1.48501 * 109.47312 * 269.99792 * 3 2 1 5 5 H 1.48502 * 109.47242 * 29.99829 * 3 2 1 6 6 H 1.48505 * 109.47171 * 149.99696 * 3 2 1 7 7 C 1.37878 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99717 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99883 * 180.02562 * 7 2 1 10 10 C 1.50706 * 109.47074 * 180.02562 * 9 7 2 11 11 C 1.38346 * 119.93703 * 269.97611 * 10 9 7 12 12 C 1.38297 * 120.24427 * 180.02562 * 11 10 9 13 13 C 1.38042 * 120.11747 * 359.74695 * 12 11 10 14 14 C 1.39310 * 119.87826 * 0.50390 * 13 12 11 15 15 C 1.48422 * 120.12144 * 179.77311 * 14 13 12 16 16 C 1.41230 * 120.02125 * 179.70404 * 15 14 13 17 17 C 1.35946 * 119.52335 * 180.02562 * 16 15 14 18 18 C 1.40775 * 119.42936 * 0.02562 * 17 16 15 19 19 N 1.32850 * 132.70688 * 179.97438 * 18 17 16 20 20 C 1.32526 * 109.68898 * 180.02562 * 19 18 17 21 21 N 1.31236 * 109.64063 * 359.97438 * 20 19 18 22 22 N 1.36638 * 119.90507 * 359.74920 * 18 17 16 23 23 C 1.35810 * 120.73795 * 0.50885 * 22 18 17 24 24 C 1.37991 * 119.94244 * 89.99655 * 10 9 7 25 25 H 0.96992 * 120.00451 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47425 * 59.99998 * 9 7 2 27 27 H 1.09004 * 109.46719 * 299.99753 * 9 7 2 28 28 H 1.08003 * 119.87700 * 0.04041 * 11 10 9 29 29 H 1.08001 * 119.94113 * 179.97438 * 12 11 10 30 30 H 1.07996 * 120.06329 * 180.25614 * 13 12 11 31 31 H 1.08005 * 120.24287 * 359.97438 * 16 15 14 32 32 H 1.07992 * 120.29049 * 180.02562 * 17 16 15 33 33 H 1.08005 * 125.17665 * 180.02562 * 20 19 18 34 34 H 1.08002 * 119.78080 * 179.77047 * 23 22 18 35 35 H 1.08004 * 120.06305 * 359.95208 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0140 -2.6148 0.0010 11 6 4.2441 -3.2659 1.1998 12 6 4.7057 -4.5695 1.2071 13 6 4.9342 -5.2301 0.0167 14 6 4.7091 -4.5775 -1.1933 15 6 4.9579 -5.2809 -2.4764 16 6 4.7231 -4.6195 -3.7019 17 6 4.9539 -5.2736 -4.8712 18 6 5.4229 -6.6005 -4.8405 19 7 5.7295 -7.4701 -5.7969 20 6 6.1321 -8.6093 -5.2523 21 7 6.0979 -8.5091 -3.9442 22 7 5.6466 -7.2165 -3.6415 23 6 5.4117 -6.5662 -2.4726 24 6 4.2440 -3.2639 -1.1948 25 1 -0.4850 0.8399 -0.0004 26 1 3.8745 -0.6800 0.8910 27 1 3.8751 -0.6803 -0.8889 28 1 4.0625 -2.7542 2.1334 29 1 4.8841 -5.0729 2.1458 30 1 5.2907 -6.2495 0.0235 31 1 4.3619 -3.6017 -3.7103 32 1 4.7789 -4.7795 -5.8154 33 1 6.4419 -9.4862 -5.8014 34 1 5.5903 -7.0692 -1.5337 35 1 4.0635 -2.7550 -2.1301 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240357006.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:55 Heat of formation + Delta-G solvation = 123.603639 kcal Electronic energy + Delta-G solvation = -19740.639677 eV Core-core repulsion = 16704.838289 eV Total energy + Delta-G solvation = -3035.801388 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.73135 -40.57211 -38.67214 -35.45651 -34.71106 -33.79793 -32.89141 -31.25435 -30.18524 -29.04495 -25.62958 -25.03358 -24.42728 -23.13500 -22.61921 -21.49215 -18.94145 -18.82084 -18.20278 -17.83731 -17.25920 -16.48104 -16.30447 -15.91425 -15.86728 -15.31759 -14.95602 -14.72033 -14.25893 -14.09643 -13.83640 -13.62387 -13.40403 -13.23409 -12.85542 -12.51127 -12.35997 -12.30538 -11.99846 -11.82153 -11.65680 -11.42710 -11.25675 -10.91069 -10.76196 -9.79764 -9.48794 -8.89435 -8.27250 -6.32398 -0.60327 -0.28295 0.62254 0.68981 1.00238 1.39567 1.41626 1.52681 1.69433 2.31479 2.37667 2.91775 3.05630 3.07554 3.10931 3.45051 3.64175 3.84906 3.98200 4.08494 4.25431 4.31610 4.39005 4.59229 4.62075 4.80812 4.91137 5.04316 5.07680 5.13360 5.21814 5.23722 5.31234 5.33873 5.55207 5.59569 5.63716 5.67162 5.99444 6.13256 6.30202 6.74891 6.84039 7.31492 8.89141 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026252 B = 0.003764 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.318818 B = 7437.458320 C = 8131.956566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.008 3.992 3 Si 0.948 3.052 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.244 1.244 7 C -0.518 4.518 8 H 0.029 0.971 9 C 0.018 3.982 10 C -0.060 4.060 11 C -0.127 4.127 12 C -0.112 4.112 13 C -0.126 4.126 14 C -0.048 4.048 15 C -0.060 4.060 16 C -0.048 4.048 17 C -0.104 4.104 18 C 0.260 3.740 19 N -0.574 5.574 20 C 0.235 3.765 21 N -0.371 5.371 22 N -0.290 5.290 23 C 0.106 3.894 24 C -0.113 4.113 25 H 0.267 0.733 26 H 0.031 0.969 27 H 0.034 0.966 28 H 0.119 0.881 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.171 0.829 32 H 0.182 0.818 33 H 0.263 0.737 34 H 0.193 0.807 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.421 -11.828 -5.394 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.189 4.189 3 Si 0.771 3.229 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.167 1.167 7 C -0.556 4.556 8 H 0.047 0.953 9 C -0.019 4.019 10 C -0.060 4.060 11 C -0.145 4.145 12 C -0.130 4.130 13 C -0.143 4.143 14 C -0.049 4.049 15 C -0.065 4.065 16 C -0.073 4.073 17 C -0.126 4.126 18 C 0.008 3.992 19 N -0.305 5.305 20 C -0.064 4.064 21 N -0.203 5.203 22 N -0.063 5.063 23 C -0.022 4.022 24 C -0.131 4.131 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.137 0.863 29 H 0.169 0.831 30 H 0.168 0.832 31 H 0.188 0.812 32 H 0.199 0.801 33 H 0.278 0.722 34 H 0.210 0.790 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.531 -12.422 -5.378 19.859 hybrid contribution -0.505 0.965 0.165 1.101 sum 14.026 -11.458 -5.213 18.846 Atomic orbital electron populations 1.70057 1.08376 1.28212 1.52410 1.25968 0.95522 1.03347 0.94080 0.85687 0.79540 0.78224 0.79410 1.18851 1.21358 1.16738 1.21166 0.90867 0.92924 1.50608 0.95268 1.18687 0.94175 0.91188 0.97837 1.20086 0.95180 0.97059 0.93688 1.21352 0.99442 0.95995 0.97728 1.21298 0.98666 0.93849 0.99183 1.21364 1.01245 1.00608 0.91115 1.18323 1.01990 0.93431 0.91142 1.18341 1.01819 0.92108 0.94236 1.21676 0.93978 1.01743 0.89899 1.20527 1.01653 0.88767 1.01606 1.22313 0.98280 0.96469 0.82132 1.70909 1.26725 1.02437 1.30428 1.26946 0.93402 0.97672 0.88426 1.78466 1.29971 0.93938 1.17892 1.47653 1.40535 1.10716 1.07369 1.21755 0.99070 0.92431 0.88959 1.21158 0.99545 0.94144 0.98258 0.92452 0.95049 0.94782 0.86252 0.83135 0.83184 0.81154 0.80084 0.72191 0.78975 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.00 13.96 21.45 0.30 -57.70 16 2 C 0.01 0.44 5.47 84.65 0.46 0.90 16 3 Si 0.95 41.94 27.47 68.60 1.88 43.83 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.24 -9.89 6.54 99.48 0.65 -9.24 16 7 C -0.52 -28.48 9.65 25.60 0.25 -28.23 16 8 H 0.03 1.81 7.98 -2.91 -0.02 1.79 16 9 C 0.02 0.80 4.17 29.10 0.12 0.93 16 10 C -0.06 -2.24 5.06 -19.90 -0.10 -2.34 16 11 C -0.13 -4.17 9.69 22.31 0.22 -3.95 16 12 C -0.11 -2.85 10.03 22.24 0.22 -2.63 16 13 C -0.13 -2.92 9.41 22.48 0.21 -2.71 16 14 C -0.05 -1.26 5.88 -20.04 -0.12 -1.38 16 15 C -0.06 -1.39 5.84 -20.28 -0.12 -1.50 16 16 C -0.05 -1.00 9.43 22.47 0.21 -0.78 16 17 C -0.10 -2.18 10.09 22.36 0.23 -1.95 16 18 C 0.26 6.71 7.88 134.12 1.06 7.77 16 19 N -0.57 -15.05 11.25 -198.08 -2.23 -17.28 16 20 C 0.24 5.16 12.98 180.83 2.35 7.51 16 21 N -0.37 -9.49 12.78 -61.37 -0.78 -10.27 16 22 N -0.29 -7.43 3.89 -192.12 -0.75 -8.18 16 23 C 0.11 2.33 10.60 83.63 0.89 3.21 16 24 C -0.11 -3.62 9.08 22.48 0.20 -3.41 16 25 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 26 H 0.03 1.35 7.14 -2.39 -0.02 1.33 16 27 H 0.03 1.41 7.51 -2.39 -0.02 1.40 16 28 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 29 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 30 H 0.15 2.40 6.18 -2.91 -0.02 2.38 16 31 H 0.17 3.08 6.25 -2.91 -0.02 3.06 16 32 H 0.18 2.84 8.06 -2.91 -0.02 2.82 16 33 H 0.26 3.03 8.06 -2.91 -0.02 3.00 16 34 H 0.19 3.24 6.11 -2.91 -0.02 3.23 16 35 H 0.13 3.86 6.21 -2.91 -0.02 3.84 16 Total: -1.00 -71.51 303.30 5.57 -65.94 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 1.07 Total: 12.25 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 6.08 Total: -28.58 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -3.46 Total: -93.43 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.88 Total: 43.83 kcal Total: -71.51 5.57 -65.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240357006.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.540 kcal (2) G-P(sol) polarization free energy of solvation -71.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds