Wall clock time and date at job start Wed Apr 15 2020 11:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86800 * 119.99747 * 2 1 4 4 H 1.48498 * 109.47363 * 240.00539 * 3 2 1 5 5 H 1.48501 * 109.47039 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46981 * 120.00513 * 3 2 1 7 7 C 1.39926 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99974 * 197.89489 * 7 2 1 9 9 C 1.41424 * 120.00014 * 17.88884 * 7 2 1 10 10 C 1.40792 * 120.18727 * 24.48283 * 9 7 2 11 11 C 1.37676 * 119.98848 * 180.02562 * 10 9 7 12 12 C 1.38433 * 120.38247 * 359.72101 * 11 10 9 13 13 C 1.39688 * 120.37500 * 0.55904 * 12 11 10 14 14 C 1.48409 * 119.99981 * 179.71571 * 13 12 11 15 15 C 1.40021 * 119.89730 * 179.45610 * 14 13 12 16 16 C 1.36324 * 120.68359 * 180.26848 * 15 14 13 17 17 C 1.39418 * 120.15305 * 0.02562 * 16 15 14 18 18 N 1.37069 * 133.52823 * 179.97438 * 17 16 15 19 19 H 0.97007 * 125.37525 * 0.04953 * 18 17 16 20 20 N 1.39834 * 109.24169 * 180.02562 * 18 17 16 21 21 C 1.30641 * 110.05360 * 0.02562 * 20 18 17 22 22 N 1.39732 * 126.18100 * 180.02562 * 21 20 18 23 23 C 1.40830 * 119.69378 * 359.97438 * 17 16 15 24 24 C 1.38618 * 119.89499 * 359.72637 * 14 13 12 25 25 C 1.38773 * 120.00120 * 359.44378 * 13 12 11 26 26 H 0.96996 * 120.00358 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00283 * 0.04695 * 10 9 7 28 28 H 1.08004 * 119.80930 * 179.97438 * 11 10 9 29 29 H 1.08006 * 119.81223 * 180.29754 * 12 11 10 30 30 H 1.08005 * 119.65847 * 0.27182 * 15 14 13 31 31 H 1.08005 * 119.92213 * 179.97438 * 16 15 14 32 32 H 0.97002 * 119.99494 * 179.97438 * 22 21 20 33 33 H 0.96993 * 120.00436 * 359.94234 * 22 21 20 34 34 H 1.07995 * 120.27792 * 359.74414 * 24 14 13 35 35 H 1.08006 * 120.18883 * 180.29414 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0959 1.6966 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0961 1.6964 1.2124 7 6 2.0080 -1.2118 -0.0005 8 1 3.0488 -1.2345 0.2868 9 6 1.3523 -2.4068 -0.3773 10 6 0.2221 -2.3601 -1.2157 11 6 -0.4134 -3.5260 -1.5794 12 6 0.0554 -4.7486 -1.1302 13 6 1.1718 -4.8126 -0.2931 14 6 1.6636 -6.1274 0.1887 15 6 2.7897 -6.1899 1.0185 16 6 3.2584 -7.3893 1.4659 17 6 2.6180 -8.5722 1.0994 18 7 2.8450 -9.8946 1.3799 19 1 3.5631 -10.2356 1.9359 20 7 1.8776 -10.6743 0.7384 21 6 1.0564 -9.9091 0.0700 22 7 -0.0342 -10.3365 -0.6918 23 6 1.4844 -8.5223 0.2653 24 6 1.0099 -7.2900 -0.1887 25 6 1.8246 -3.6473 0.0834 26 1 -0.4850 0.8400 0.0004 27 1 -0.1459 -1.4099 -1.5736 28 1 -1.2804 -3.4868 -2.2224 29 1 -0.4474 -5.6578 -1.4252 30 1 3.2922 -5.2785 1.3071 31 1 4.1283 -7.4233 2.1052 32 1 -0.5876 -9.6872 -1.1534 33 1 -0.2377 -11.2824 -0.7594 34 1 0.1414 -7.2431 -0.8288 35 1 2.6909 -3.6936 0.7267 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241722700.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:12 Heat of formation + Delta-G solvation = 99.104716 kcal Electronic energy + Delta-G solvation = -19810.409590 eV Core-core repulsion = 16773.545849 eV Total energy + Delta-G solvation = -3036.863741 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -40.94147 -38.08628 -36.40392 -34.67418 -33.64949 -31.23557 -30.55239 -29.83917 -29.05550 -27.17233 -25.30555 -22.95346 -22.42401 -20.96384 -20.27490 -19.99866 -17.79402 -17.43648 -16.80184 -15.66095 -15.42771 -15.37515 -14.83341 -14.75298 -14.40363 -13.64285 -13.41374 -13.24974 -12.87631 -12.46089 -12.19675 -11.63876 -11.46567 -11.38783 -11.15258 -11.06309 -10.82605 -10.59612 -10.45962 -10.39506 -9.71669 -9.38148 -9.20353 -8.97484 -8.53637 -7.72018 -7.50325 -6.79643 -6.67842 -4.38131 1.26787 1.56485 2.75078 2.79659 2.83421 3.05726 3.07375 3.09097 3.23195 3.74959 3.92197 4.20315 4.68513 4.68939 4.95335 5.33394 5.35235 5.58810 5.70283 5.71975 6.03314 6.10068 6.30821 6.35669 6.44633 6.60931 6.82123 6.89491 6.98897 7.09124 7.22768 7.29709 7.35984 7.38566 7.56778 7.62683 7.84210 7.99816 8.04838 8.09892 8.25368 8.59954 8.87064 8.93219 10.17817 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034310 B = 0.003692 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.887821 B = 7581.740259 C = 8316.981162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.466 4.466 8 H 0.077 0.923 9 C 0.109 3.891 10 C -0.158 4.158 11 C -0.107 4.107 12 C -0.226 4.226 13 C -0.031 4.031 14 C -0.057 4.057 15 C -0.052 4.052 16 C -0.155 4.155 17 C 0.139 3.861 18 N -0.516 5.516 19 H 0.436 0.564 20 N -0.332 5.332 21 C 0.360 3.640 22 N -0.836 5.836 23 C -0.193 4.193 24 C -0.042 4.042 25 C -0.208 4.208 26 H 0.281 0.719 27 H 0.118 0.882 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.135 0.865 31 H 0.123 0.877 32 H 0.412 0.588 33 H 0.404 0.596 34 H 0.126 0.874 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.775 -12.148 0.197 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.107 3.893 10 C -0.177 4.177 11 C -0.125 4.125 12 C -0.245 4.245 13 C -0.031 4.031 14 C -0.058 4.058 15 C -0.073 4.073 16 C -0.178 4.178 17 C 0.023 3.977 18 N -0.232 5.232 19 H 0.280 0.720 20 N -0.159 5.159 21 C 0.089 3.911 22 N -0.389 5.389 23 C -0.202 4.202 24 C -0.062 4.062 25 C -0.228 4.228 26 H 0.092 0.908 27 H 0.136 0.864 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.153 0.847 31 H 0.141 0.859 32 H 0.243 0.757 33 H 0.233 0.767 34 H 0.144 0.856 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.918 -13.132 0.574 13.284 hybrid contribution 0.181 1.292 -0.026 1.305 sum 2.099 -11.840 0.548 12.037 Atomic orbital electron populations 1.69814 1.07567 1.29303 1.35342 1.25881 0.94697 1.01251 0.92223 0.86388 0.80165 0.80313 0.79978 1.18830 1.20383 1.19024 1.19525 0.98148 0.91252 1.40612 0.90454 1.17528 0.91236 0.91852 0.88724 1.21411 0.99038 0.96904 1.00362 1.20616 0.98711 0.93173 0.99999 1.20385 1.00712 0.96196 1.07211 1.18218 0.96280 0.90175 0.98413 1.18824 0.95582 0.93001 0.98442 1.20962 0.94806 0.97096 0.94399 1.19682 1.02548 0.89460 1.06075 1.18732 0.95726 0.86308 0.96910 1.45232 1.28534 1.01414 1.48023 0.72000 1.76498 1.04277 1.17260 1.17861 1.20174 0.89441 0.89274 0.92198 1.41274 1.30427 1.10792 1.56396 1.19386 1.00637 0.92286 1.07934 1.20596 0.98660 0.89239 0.97679 1.21053 1.03405 0.91967 1.06354 0.90829 0.86417 0.89264 0.89203 0.84727 0.85926 0.75721 0.76671 0.85606 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.20 10.96 55.55 0.61 -19.59 16 2 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 3 Si 0.91 18.32 29.60 -169.99 -5.03 13.29 16 4 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 7 C -0.47 -12.06 9.05 -37.74 -0.34 -12.40 16 8 H 0.08 1.91 7.91 -52.49 -0.42 1.50 16 9 C 0.11 2.82 5.57 -106.86 -0.60 2.23 16 10 C -0.16 -4.00 8.69 -38.82 -0.34 -4.34 16 11 C -0.11 -2.42 10.01 -39.71 -0.40 -2.82 16 12 C -0.23 -4.84 9.43 -38.97 -0.37 -5.21 16 13 C -0.03 -0.67 5.87 -104.97 -0.62 -1.28 16 14 C -0.06 -1.05 5.87 -104.90 -0.62 -1.67 16 15 C -0.05 -0.87 9.34 -39.60 -0.37 -1.24 16 16 C -0.16 -2.23 10.01 -39.83 -0.40 -2.63 16 17 C 0.14 2.10 7.32 -84.11 -0.62 1.48 16 18 N -0.52 -6.94 7.36 32.39 0.24 -6.70 16 19 H 0.44 4.40 8.96 -182.79 -1.64 2.76 16 20 N -0.33 -4.88 12.56 32.58 0.41 -4.47 16 21 C 0.36 5.10 8.70 -152.81 -1.33 3.78 16 22 N -0.84 -8.38 9.14 32.54 0.30 -8.08 16 23 C -0.19 -3.05 6.36 -105.10 -0.67 -3.72 16 24 C -0.04 -0.69 9.48 -38.92 -0.37 -1.06 16 25 C -0.21 -4.91 9.16 -38.53 -0.35 -5.26 16 26 H 0.28 6.51 8.30 -40.82 -0.34 6.18 16 27 H 0.12 3.08 6.15 -52.49 -0.32 2.76 16 28 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 29 H 0.09 1.66 6.17 -52.48 -0.32 1.34 16 30 H 0.14 2.12 6.16 -52.48 -0.32 1.80 16 31 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.41 3.40 8.96 -40.82 -0.37 3.04 16 33 H 0.40 3.19 8.96 -40.82 -0.37 2.82 16 34 H 0.13 1.89 6.17 -52.49 -0.32 1.57 16 35 H 0.10 2.11 6.16 -52.48 -0.32 1.78 16 LS Contribution 300.93 15.07 4.54 4.54 Total: -1.00 -29.56 300.93 -10.79 -40.35 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -4.38 Total: 13.00 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: -7.47 Total: -32.33 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 1.55 Total: -38.84 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.56 -10.79 -40.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241722700.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.451 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds