Wall clock time and date at job start Wed Apr 15 2020 11:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86800 * 119.99747 * 2 1 4 4 H 1.48498 * 109.47363 * 240.00539 * 3 2 1 5 5 H 1.48501 * 109.47039 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46981 * 120.00513 * 3 2 1 7 7 C 1.39926 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99974 * 197.89489 * 7 2 1 9 9 C 1.41424 * 120.00014 * 17.88884 * 7 2 1 10 10 C 1.40792 * 120.18727 * 24.48283 * 9 7 2 11 11 C 1.37676 * 119.98848 * 180.02562 * 10 9 7 12 12 C 1.38433 * 120.38247 * 359.72101 * 11 10 9 13 13 C 1.39688 * 120.37500 * 0.55904 * 12 11 10 14 14 C 1.48409 * 119.99981 * 179.71571 * 13 12 11 15 15 C 1.40021 * 119.89730 * 179.45610 * 14 13 12 16 16 C 1.36324 * 120.68359 * 180.26848 * 15 14 13 17 17 C 1.39418 * 120.15305 * 0.02562 * 16 15 14 18 18 N 1.37069 * 133.52823 * 179.97438 * 17 16 15 19 19 H 0.97007 * 125.37525 * 0.04953 * 18 17 16 20 20 N 1.39834 * 109.24169 * 180.02562 * 18 17 16 21 21 C 1.30641 * 110.05360 * 0.02562 * 20 18 17 22 22 N 1.39732 * 126.18100 * 180.02562 * 21 20 18 23 23 C 1.40830 * 119.69378 * 359.97438 * 17 16 15 24 24 C 1.38618 * 119.89499 * 359.72637 * 14 13 12 25 25 C 1.38773 * 120.00120 * 359.44378 * 13 12 11 26 26 H 0.96996 * 120.00358 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00283 * 0.04695 * 10 9 7 28 28 H 1.08004 * 119.80930 * 179.97438 * 11 10 9 29 29 H 1.08006 * 119.81223 * 180.29754 * 12 11 10 30 30 H 1.08005 * 119.65847 * 0.27182 * 15 14 13 31 31 H 1.08005 * 119.92213 * 179.97438 * 16 15 14 32 32 H 0.97002 * 119.99494 * 179.97438 * 22 21 20 33 33 H 0.96993 * 120.00436 * 359.94234 * 22 21 20 34 34 H 1.07995 * 120.27792 * 359.74414 * 24 14 13 35 35 H 1.08006 * 120.18883 * 180.29414 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0959 1.6966 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0961 1.6964 1.2124 7 6 2.0080 -1.2118 -0.0005 8 1 3.0488 -1.2345 0.2868 9 6 1.3523 -2.4068 -0.3773 10 6 0.2221 -2.3601 -1.2157 11 6 -0.4134 -3.5260 -1.5794 12 6 0.0554 -4.7486 -1.1302 13 6 1.1718 -4.8126 -0.2931 14 6 1.6636 -6.1274 0.1887 15 6 2.7897 -6.1899 1.0185 16 6 3.2584 -7.3893 1.4659 17 6 2.6180 -8.5722 1.0994 18 7 2.8450 -9.8946 1.3799 19 1 3.5631 -10.2356 1.9359 20 7 1.8776 -10.6743 0.7384 21 6 1.0564 -9.9091 0.0700 22 7 -0.0342 -10.3365 -0.6918 23 6 1.4844 -8.5223 0.2653 24 6 1.0099 -7.2900 -0.1887 25 6 1.8246 -3.6473 0.0834 26 1 -0.4850 0.8400 0.0004 27 1 -0.1459 -1.4099 -1.5736 28 1 -1.2804 -3.4868 -2.2224 29 1 -0.4474 -5.6578 -1.4252 30 1 3.2922 -5.2785 1.3071 31 1 4.1283 -7.4233 2.1052 32 1 -0.5876 -9.6872 -1.1534 33 1 -0.2377 -11.2824 -0.7594 34 1 0.1414 -7.2431 -0.8288 35 1 2.6909 -3.6936 0.7267 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241722700.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:11 Heat of formation + Delta-G solvation = 82.453418 kcal Electronic energy + Delta-G solvation = -19811.131644 eV Core-core repulsion = 16773.545849 eV Total energy + Delta-G solvation = -3037.585795 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.09044 -39.67190 -37.82616 -35.74688 -35.34953 -32.60292 -32.02825 -31.45815 -30.24297 -28.61421 -27.12025 -24.28998 -23.83910 -22.23759 -21.90468 -21.41504 -19.20678 -18.77661 -18.05004 -17.30379 -16.60379 -16.51157 -16.44990 -15.87466 -15.81735 -15.15787 -14.84811 -14.66055 -14.48219 -14.08848 -13.68727 -13.23431 -13.00621 -12.83912 -12.66202 -12.55861 -12.24406 -12.02327 -11.96942 -11.72684 -11.42490 -11.11307 -10.99198 -10.13841 -9.89749 -9.34991 -9.02099 -8.60251 -8.08997 -6.30660 0.07439 0.18326 1.04946 1.38349 1.41303 1.51362 1.60171 1.75283 1.76105 2.23471 2.70166 2.76668 3.03335 3.55103 3.83462 3.85202 3.98888 4.18516 4.39914 4.49460 4.56772 4.69034 4.80560 5.01202 5.12406 5.16688 5.22209 5.29335 5.35235 5.45504 5.68628 5.77637 5.89559 6.08246 6.13152 6.25491 6.33959 6.40624 6.45144 6.69337 6.73934 6.98840 7.07733 7.18847 8.37593 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034310 B = 0.003692 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.887821 B = 7581.740259 C = 8316.981162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.037 3.963 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.504 4.504 8 H 0.076 0.924 9 C 0.079 3.921 10 C -0.191 4.191 11 C -0.109 4.109 12 C -0.228 4.228 13 C -0.025 4.025 14 C -0.091 4.091 15 C -0.062 4.062 16 C -0.145 4.145 17 C 0.140 3.860 18 N -0.505 5.505 19 H 0.450 0.550 20 N -0.347 5.347 21 C 0.359 3.641 22 N -0.819 5.819 23 C -0.213 4.213 24 C -0.031 4.031 25 C -0.228 4.228 26 H 0.287 0.713 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.134 0.866 31 H 0.156 0.844 32 H 0.422 0.578 33 H 0.416 0.584 34 H 0.139 0.861 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.154 -14.048 0.402 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.534 4.534 8 H 0.094 0.906 9 C 0.077 3.923 10 C -0.210 4.210 11 C -0.127 4.127 12 C -0.247 4.247 13 C -0.025 4.025 14 C -0.093 4.093 15 C -0.082 4.082 16 C -0.167 4.167 17 C 0.022 3.978 18 N -0.222 5.222 19 H 0.297 0.703 20 N -0.176 5.176 21 C 0.088 3.912 22 N -0.374 5.374 23 C -0.222 4.222 24 C -0.051 4.051 25 C -0.247 4.247 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.131 0.869 29 H 0.141 0.859 30 H 0.152 0.848 31 H 0.174 0.826 32 H 0.254 0.746 33 H 0.247 0.753 34 H 0.157 0.843 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.283 -15.080 0.774 15.271 hybrid contribution 0.040 1.576 -0.075 1.579 sum 2.322 -13.503 0.698 13.719 Atomic orbital electron populations 1.69880 1.08977 1.30453 1.36090 1.26709 0.95439 1.04388 0.91261 0.85295 0.78806 0.75842 0.80017 1.18587 1.19339 1.18364 1.19793 0.98412 0.92549 1.42602 0.90614 1.17889 0.91991 0.92972 0.89422 1.21365 1.00275 0.97208 1.02182 1.20914 0.99053 0.92906 0.99828 1.20791 1.00552 0.96934 1.06389 1.18551 0.95556 0.91238 0.97126 1.18727 0.97570 0.91993 1.00999 1.21018 0.94565 0.98085 0.94531 1.19906 1.03016 0.88290 1.05493 1.18946 0.95434 0.87083 0.96320 1.45302 1.28581 1.00729 1.47580 0.70282 1.76504 1.04877 1.17539 1.18651 1.20365 0.90112 0.88499 0.92246 1.41325 1.29078 1.11898 1.55107 1.19590 1.01350 0.92737 1.08561 1.20660 0.98497 0.88924 0.97028 1.21243 1.04224 0.92141 1.07111 0.90264 0.88263 0.86927 0.85866 0.84819 0.82636 0.74587 0.75256 0.84315 0.87790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.64 10.96 21.82 0.24 -43.40 16 2 C 0.04 1.85 5.14 85.25 0.44 2.29 16 3 Si 0.98 38.32 29.60 68.60 2.03 40.35 16 4 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 6 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 7 C -0.50 -27.27 9.05 23.46 0.21 -27.06 16 8 H 0.08 3.93 7.91 -2.91 -0.02 3.91 16 9 C 0.08 4.30 5.57 -21.32 -0.12 4.18 16 10 C -0.19 -10.08 8.69 22.76 0.20 -9.88 16 11 C -0.11 -4.98 10.01 22.18 0.22 -4.76 16 12 C -0.23 -9.59 9.43 22.67 0.21 -9.38 16 13 C -0.02 -1.07 5.87 -20.09 -0.12 -1.19 16 14 C -0.09 -3.28 5.87 -20.04 -0.12 -3.40 16 15 C -0.06 -1.97 9.34 22.26 0.21 -1.76 16 16 C -0.14 -3.81 10.01 22.11 0.22 -3.58 16 17 C 0.14 3.84 7.32 39.24 0.29 4.13 16 18 N -0.50 -12.09 7.36 -51.43 -0.38 -12.47 16 19 H 0.45 7.69 8.96 -213.48 -1.91 5.78 16 20 N -0.35 -9.22 12.56 -50.82 -0.64 -9.86 16 21 C 0.36 9.16 8.70 135.25 1.18 10.34 16 22 N -0.82 -13.93 9.14 -50.98 -0.47 -14.39 16 23 C -0.21 -6.19 6.36 -20.17 -0.13 -6.32 16 24 C -0.03 -0.97 9.48 22.70 0.22 -0.75 16 25 C -0.23 -11.08 9.16 22.95 0.21 -10.87 16 26 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 27 H 0.10 5.49 6.15 -2.91 -0.02 5.48 16 28 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 29 H 0.12 4.26 6.17 -2.91 -0.02 4.25 16 30 H 0.13 4.20 6.16 -2.91 -0.02 4.18 16 31 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 32 H 0.42 5.64 8.96 -92.71 -0.83 4.80 16 33 H 0.42 5.28 8.96 -92.71 -0.83 4.45 16 34 H 0.14 3.79 6.17 -2.91 -0.02 3.78 16 35 H 0.10 4.71 6.16 -2.91 -0.02 4.69 16 Total: -1.00 -65.33 300.93 1.52 -63.81 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: -2.38 Total: 33.98 kcal Atomic # 6 Polarization: -61.14 SS G_CDS: 3.12 Total: -58.02 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -1.24 Total: -80.12 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -65.33 1.52 -63.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241722700.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.261 kcal (2) G-P(sol) polarization free energy of solvation -65.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds