Wall clock time and date at job start Wed Apr 15 2020 11:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00039 * 2 1 4 4 H 1.48508 * 109.46853 * 84.72007 * 3 2 1 5 5 H 1.48494 * 109.47304 * 204.71676 * 3 2 1 6 6 H 1.48491 * 109.47283 * 324.72266 * 3 2 1 7 7 C 1.38809 * 120.00375 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99951 * 22.11584 * 7 2 1 9 9 N 1.36934 * 120.00431 * 202.11939 * 7 2 1 10 10 C 1.46501 * 119.99612 * 35.28628 * 9 7 2 11 11 C 1.50699 * 109.47301 * 90.00112 * 10 9 7 12 12 C 1.32576 * 119.99860 * 125.00179 * 11 10 9 13 13 C 1.47802 * 119.99693 * 180.02562 * 12 11 10 14 14 C 1.39557 * 120.10813 * 359.71757 * 13 12 11 15 15 C 1.37944 * 119.92603 * 179.74569 * 14 13 12 16 16 C 1.38522 * 120.14309 * 0.53885 * 15 14 13 17 17 F 1.35099 * 119.89432 * 179.76592 * 16 15 14 18 18 C 1.38768 * 120.21366 * 359.73261 * 16 15 14 19 19 F 1.35103 * 119.96199 * 180.02562 * 18 16 15 20 20 C 1.38137 * 120.07142 * 359.97438 * 18 16 15 21 21 C 1.46497 * 119.99990 * 215.28011 * 9 7 2 22 22 C 1.53001 * 117.50187 * 12.18496 * 21 9 7 23 23 C 1.52998 * 117.50455 * 303.52133 * 21 9 7 24 24 H 0.97004 * 120.00016 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46831 * 209.99744 * 10 9 7 26 26 H 1.09000 * 109.47050 * 329.99278 * 10 9 7 27 27 H 1.07999 * 119.99719 * 304.99392 * 11 10 9 28 28 H 1.07999 * 120.00421 * 359.97438 * 12 11 10 29 29 H 1.07997 * 120.03536 * 0.02562 * 14 13 12 30 30 H 1.07997 * 119.92255 * 180.27126 * 15 14 13 31 31 H 1.08000 * 120.06790 * 179.97438 * 20 18 16 32 32 H 1.09008 * 115.54780 * 157.85016 * 21 9 7 33 33 H 1.09000 * 117.49427 * 359.97438 * 22 21 9 34 34 H 1.08997 * 117.50179 * 145.01603 * 22 21 9 35 35 H 1.09001 * 117.50003 * 214.97773 * 23 21 9 36 36 H 1.09006 * 117.49332 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3860 2.1108 1.3942 5 1 3.5990 1.4106 -0.5854 6 1 1.5079 2.6179 -0.8085 7 6 2.0102 -1.2021 -0.0005 8 1 1.5299 -2.1029 -0.3531 9 7 3.3040 -1.2459 0.4460 10 6 3.7240 -0.3912 1.5592 11 6 3.5160 -1.1225 2.8603 12 6 4.5273 -1.2751 3.7039 13 6 4.3235 -1.9928 4.9797 14 6 3.0660 -2.5056 5.3013 15 6 2.8812 -3.1795 6.4907 16 6 3.9383 -3.3385 7.3716 17 9 3.7505 -3.9952 8.5372 18 6 5.1898 -2.8261 7.0604 19 9 6.2174 -2.9846 7.9230 20 6 5.3863 -2.1551 5.8690 21 6 4.2680 -2.1477 -0.1895 22 6 3.8607 -2.7984 -1.5129 23 6 3.9197 -3.6368 -0.2336 24 1 -0.4850 0.8401 0.0004 25 1 4.7792 -0.1414 1.4474 26 1 3.1319 0.5240 1.5580 27 1 2.5431 -1.5221 3.1056 28 1 5.5003 -0.8757 3.4585 29 1 2.2396 -2.3790 4.6177 30 1 1.9091 -3.5801 6.7375 31 1 6.3602 -1.7559 5.6270 32 1 5.3169 -1.8797 -0.0623 33 1 2.8752 -2.5559 -1.9106 34 1 4.6415 -2.9589 -2.2562 35 1 4.7395 -4.3485 -0.1358 36 1 2.9734 -3.9457 0.2106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289121095.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:42 Heat of formation + Delta-G solvation = 5.271148 kcal Electronic energy + Delta-G solvation = -20711.320334 eV Core-core repulsion = 17219.698478 eV Total energy + Delta-G solvation = -3491.621856 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.48669 -48.56178 -39.07065 -37.46270 -34.81115 -33.07447 -31.41502 -30.93794 -29.13391 -25.64688 -24.08214 -23.32734 -22.36988 -21.51279 -19.87013 -19.46053 -18.05368 -17.18392 -16.64460 -16.59299 -16.32040 -15.71281 -15.23891 -14.98932 -14.88787 -14.49105 -14.08394 -13.91014 -13.38244 -12.92796 -12.70369 -12.58697 -12.37634 -12.31397 -11.83677 -11.60693 -11.14811 -10.96247 -10.73999 -10.64483 -10.19715 -10.16455 -9.85407 -9.67172 -9.39456 -9.06450 -8.62840 -7.91328 -6.92610 -6.14849 -3.55435 0.67583 0.96565 2.51530 3.17726 3.37283 3.40465 3.63488 3.74755 4.27601 4.36576 4.48622 4.68788 4.74814 4.79646 4.97755 5.07094 5.19271 5.40985 5.65518 5.70063 5.73244 5.76154 5.89581 5.93943 5.96344 5.98451 6.15831 6.30000 6.32884 6.36139 6.46572 6.70707 6.82232 6.96314 7.03156 7.05417 7.87081 8.23036 8.81113 9.54223 9.91050 10.99738 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020690 B = 0.004163 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.964183 B = 6724.303717 C = 7104.655835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.039 3.961 3 Si 0.875 3.125 4 H -0.283 1.283 5 H -0.267 1.267 6 H -0.299 1.299 7 C -0.272 4.272 8 H 0.084 0.916 9 N -0.567 5.567 10 C 0.154 3.846 11 C -0.086 4.086 12 C -0.178 4.178 13 C -0.004 4.004 14 C -0.105 4.105 15 C -0.117 4.117 16 C 0.045 3.955 17 F -0.135 7.135 18 C 0.070 3.930 19 F -0.134 7.134 20 C -0.132 4.132 21 C 0.123 3.877 22 C -0.192 4.192 23 C -0.219 4.219 24 H 0.266 0.734 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.203 -3.847 9.643 13.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.163 4.163 3 Si 0.705 3.295 4 H -0.211 1.211 5 H -0.192 1.192 6 H -0.227 1.227 7 C -0.401 4.401 8 H 0.102 0.898 9 N -0.285 5.285 10 C 0.029 3.971 11 C -0.107 4.107 12 C -0.198 4.198 13 C -0.005 4.005 14 C -0.123 4.123 15 C -0.135 4.135 16 C 0.025 3.975 17 F -0.114 7.114 18 C 0.050 3.950 19 F -0.112 7.112 20 C -0.151 4.151 21 C 0.014 3.986 22 C -0.231 4.231 23 C -0.259 4.259 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.162 0.838 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.044 -3.740 9.679 13.764 hybrid contribution 0.477 0.660 0.414 0.914 sum 9.521 -3.080 10.093 14.213 Atomic orbital electron populations 1.69849 1.05953 1.26994 1.50492 1.25384 0.95069 0.97717 0.98083 0.86991 0.80875 0.84620 0.77018 1.21132 1.19186 1.22680 1.18702 0.85941 0.94704 1.40713 0.89829 1.43652 1.08002 1.45538 1.31304 1.20433 0.98257 0.93635 0.84762 1.24584 0.98179 0.93624 0.94307 1.21388 0.99958 1.04912 0.93499 1.19059 0.92001 0.95208 0.94193 1.21405 0.97781 0.96911 0.96194 1.21012 0.98303 1.00390 0.93844 1.17705 0.93786 1.00950 0.85041 1.91496 1.95743 1.78745 1.45394 1.17565 0.83690 1.03291 0.90478 1.91506 1.57019 1.94043 1.68675 1.21123 1.00896 1.00915 0.92183 1.21060 0.92174 0.88810 0.96551 1.23149 1.03343 1.05486 0.91073 1.23357 1.02550 0.96757 1.03256 0.92433 0.92834 0.91357 0.86476 0.86396 0.83602 0.83757 0.83800 0.89043 0.87814 0.90445 0.90665 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 13.97 55.49 0.78 -24.76 16 2 C 0.04 1.04 5.32 -17.43 -0.09 0.94 16 3 Si 0.87 20.63 24.92 -169.99 -4.24 16.39 16 4 H -0.28 -6.42 6.67 56.52 0.38 -6.04 16 5 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 6 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.27 -6.98 8.65 -15.06 -0.13 -7.11 16 8 H 0.08 2.34 7.31 -52.48 -0.38 1.96 16 9 N -0.57 -12.33 2.46 -167.02 -0.41 -12.74 16 10 C 0.15 2.98 4.99 -5.19 -0.03 2.96 16 11 C -0.09 -1.46 9.27 -36.21 -0.34 -1.79 16 12 C -0.18 -2.52 9.52 -37.58 -0.36 -2.88 16 13 C 0.00 -0.05 5.87 -105.01 -0.62 -0.67 16 14 C -0.10 -1.35 9.40 -39.20 -0.37 -1.72 16 15 C -0.12 -1.39 10.01 -39.58 -0.40 -1.79 16 16 C 0.05 0.59 7.31 -39.28 -0.29 0.31 16 17 F -0.14 -1.84 17.17 2.25 0.04 -1.80 16 18 C 0.07 0.92 7.30 -39.42 -0.29 0.63 16 19 F -0.13 -1.81 17.17 2.25 0.04 -1.78 16 20 C -0.13 -1.62 9.76 -39.14 -0.38 -2.00 16 21 C 0.12 2.31 6.60 -67.93 -0.45 1.86 16 22 C -0.19 -3.49 9.79 -26.69 -0.26 -3.75 16 23 C -0.22 -3.85 10.14 -26.69 -0.27 -4.12 16 24 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.05 0.91 7.71 -51.93 -0.40 0.51 16 26 H 0.07 1.47 2.94 -51.93 -0.15 1.32 16 27 H 0.12 2.07 6.03 -52.49 -0.32 1.75 16 28 H 0.12 1.47 7.87 -52.49 -0.41 1.06 16 29 H 0.15 1.85 6.16 -52.49 -0.32 1.53 16 30 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 32 H 0.09 1.52 8.11 -51.92 -0.42 1.10 16 33 H 0.10 2.14 6.82 -51.93 -0.35 1.79 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 312.31 15.07 4.71 4.71 Total: -1.00 -27.66 312.31 -7.39 -35.05 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.04 Total: 4.06 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -4.26 Total: -19.14 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.36 Total: -37.50 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.08 Total: -3.58 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.24 Total: 16.39 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.66 -7.39 -35.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289121095.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.319 kcal (2) G-P(sol) polarization free energy of solvation -27.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds