Wall clock time and date at job start Wed Apr 15 2020 11:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00039 * 2 1 4 4 H 1.48508 * 109.46853 * 84.72007 * 3 2 1 5 5 H 1.48494 * 109.47304 * 204.71676 * 3 2 1 6 6 H 1.48491 * 109.47283 * 324.72266 * 3 2 1 7 7 C 1.38809 * 120.00375 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99951 * 22.11584 * 7 2 1 9 9 N 1.36934 * 120.00431 * 202.11939 * 7 2 1 10 10 C 1.46501 * 119.99612 * 35.28628 * 9 7 2 11 11 C 1.50699 * 109.47301 * 90.00112 * 10 9 7 12 12 C 1.32576 * 119.99860 * 125.00179 * 11 10 9 13 13 C 1.47802 * 119.99693 * 180.02562 * 12 11 10 14 14 C 1.39557 * 120.10813 * 359.71757 * 13 12 11 15 15 C 1.37944 * 119.92603 * 179.74569 * 14 13 12 16 16 C 1.38522 * 120.14309 * 0.53885 * 15 14 13 17 17 F 1.35099 * 119.89432 * 179.76592 * 16 15 14 18 18 C 1.38768 * 120.21366 * 359.73261 * 16 15 14 19 19 F 1.35103 * 119.96199 * 180.02562 * 18 16 15 20 20 C 1.38137 * 120.07142 * 359.97438 * 18 16 15 21 21 C 1.46497 * 119.99990 * 215.28011 * 9 7 2 22 22 C 1.53001 * 117.50187 * 12.18496 * 21 9 7 23 23 C 1.52998 * 117.50455 * 303.52133 * 21 9 7 24 24 H 0.97004 * 120.00016 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46831 * 209.99744 * 10 9 7 26 26 H 1.09000 * 109.47050 * 329.99278 * 10 9 7 27 27 H 1.07999 * 119.99719 * 304.99392 * 11 10 9 28 28 H 1.07999 * 120.00421 * 359.97438 * 12 11 10 29 29 H 1.07997 * 120.03536 * 0.02562 * 14 13 12 30 30 H 1.07997 * 119.92255 * 180.27126 * 15 14 13 31 31 H 1.08000 * 120.06790 * 179.97438 * 20 18 16 32 32 H 1.09008 * 115.54780 * 157.85016 * 21 9 7 33 33 H 1.09000 * 117.49427 * 359.97438 * 22 21 9 34 34 H 1.08997 * 117.50179 * 145.01603 * 22 21 9 35 35 H 1.09001 * 117.50003 * 214.97773 * 23 21 9 36 36 H 1.09006 * 117.49332 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3860 2.1108 1.3942 5 1 3.5990 1.4106 -0.5854 6 1 1.5079 2.6179 -0.8085 7 6 2.0102 -1.2021 -0.0005 8 1 1.5299 -2.1029 -0.3531 9 7 3.3040 -1.2459 0.4460 10 6 3.7240 -0.3912 1.5592 11 6 3.5160 -1.1225 2.8603 12 6 4.5273 -1.2751 3.7039 13 6 4.3235 -1.9928 4.9797 14 6 3.0660 -2.5056 5.3013 15 6 2.8812 -3.1795 6.4907 16 6 3.9383 -3.3385 7.3716 17 9 3.7505 -3.9952 8.5372 18 6 5.1898 -2.8261 7.0604 19 9 6.2174 -2.9846 7.9230 20 6 5.3863 -2.1551 5.8690 21 6 4.2680 -2.1477 -0.1895 22 6 3.8607 -2.7984 -1.5129 23 6 3.9197 -3.6368 -0.2336 24 1 -0.4850 0.8401 0.0004 25 1 4.7792 -0.1414 1.4474 26 1 3.1319 0.5240 1.5580 27 1 2.5431 -1.5221 3.1056 28 1 5.5003 -0.8757 3.4585 29 1 2.2396 -2.3790 4.6177 30 1 1.9091 -3.5801 6.7375 31 1 6.3602 -1.7559 5.6270 32 1 5.3169 -1.8797 -0.0623 33 1 2.8752 -2.5559 -1.9106 34 1 4.6415 -2.9589 -2.2562 35 1 4.7395 -4.3485 -0.1358 36 1 2.9734 -3.9457 0.2106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289121095.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:41 Heat of formation + Delta-G solvation = -7.860788 kcal Electronic energy + Delta-G solvation = -20711.889778 eV Core-core repulsion = 17219.698478 eV Total energy + Delta-G solvation = -3492.191300 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.52620 -49.60583 -40.11396 -38.99894 -36.14577 -34.69766 -33.05819 -31.98418 -30.42165 -27.17851 -25.71452 -24.34670 -23.52355 -22.95321 -21.53771 -20.63766 -19.12647 -18.52868 -18.03739 -17.68863 -17.38102 -17.35171 -16.87765 -16.14781 -16.03522 -15.51272 -15.44715 -15.00410 -14.78662 -14.40632 -14.31870 -14.08338 -13.66854 -13.48020 -13.09234 -12.89776 -12.68495 -12.54643 -12.20708 -11.98750 -11.88518 -11.80056 -11.39764 -11.07907 -10.79215 -10.56249 -10.06133 -9.06498 -8.66178 -8.18288 -5.55122 -0.39738 -0.01461 1.29757 1.36752 1.47330 1.55581 2.42154 2.57678 2.74469 3.04845 3.21388 3.27822 3.41065 3.52541 3.67969 3.98248 4.10479 4.20608 4.30777 4.38171 4.42468 4.52815 4.61076 4.74262 4.78892 4.86219 4.94217 4.97006 5.02456 5.14623 5.17320 5.34452 5.55960 5.67942 5.75419 5.83836 5.96330 6.19470 6.98449 7.64360 8.01905 9.00810 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020690 B = 0.004163 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.964183 B = 6724.303717 C = 7104.655835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.019 4.019 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.254 1.254 6 H -0.314 1.314 7 C -0.250 4.250 8 H 0.042 0.958 9 N -0.582 5.582 10 C 0.152 3.848 11 C -0.122 4.122 12 C -0.136 4.136 13 C -0.022 4.022 14 C -0.107 4.107 15 C -0.114 4.114 16 C 0.041 3.959 17 F -0.140 7.140 18 C 0.059 3.941 19 F -0.137 7.137 20 C -0.115 4.115 21 C 0.110 3.890 22 C -0.196 4.196 23 C -0.206 4.206 24 H 0.263 0.737 25 H 0.086 0.914 26 H 0.045 0.955 27 H 0.097 0.903 28 H 0.147 0.853 29 H 0.141 0.859 30 H 0.164 0.836 31 H 0.171 0.829 32 H 0.129 0.871 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.606 -3.751 10.691 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.215 4.215 3 Si 0.769 3.231 4 H -0.197 1.197 5 H -0.178 1.178 6 H -0.243 1.243 7 C -0.380 4.380 8 H 0.059 0.941 9 N -0.301 5.301 10 C 0.028 3.972 11 C -0.143 4.143 12 C -0.154 4.154 13 C -0.023 4.023 14 C -0.125 4.125 15 C -0.133 4.133 16 C 0.021 3.979 17 F -0.118 7.118 18 C 0.039 3.961 19 F -0.116 7.116 20 C -0.133 4.133 21 C 0.003 3.997 22 C -0.234 4.234 23 C -0.247 4.247 24 H 0.072 0.928 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.115 0.885 28 H 0.165 0.835 29 H 0.159 0.841 30 H 0.181 0.819 31 H 0.189 0.811 32 H 0.146 0.854 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.498 -3.663 10.752 16.888 hybrid contribution -0.529 0.447 0.225 0.729 sum 11.968 -3.216 10.978 16.556 Atomic orbital electron populations 1.69984 1.07721 1.27438 1.53962 1.25963 0.95566 1.01006 0.98964 0.85933 0.79636 0.80159 0.77396 1.19668 1.17783 1.24289 1.18469 0.87626 0.93034 1.38859 0.94066 1.43761 1.07014 1.46370 1.32911 1.20465 0.99403 0.92434 0.84894 1.24130 0.98545 0.96633 0.94971 1.21592 0.99967 1.01622 0.92269 1.19093 0.92493 0.96291 0.94410 1.21497 0.97895 0.96773 0.96370 1.21170 0.99010 0.99900 0.93199 1.17921 0.94231 1.00766 0.84973 1.91487 1.95798 1.78849 1.45689 1.17705 0.83605 1.03863 0.90933 1.91502 1.57096 1.94123 1.68833 1.21307 1.01576 0.99410 0.91048 1.21435 0.93136 0.88652 0.96484 1.23135 1.02482 1.05890 0.91893 1.23294 1.02223 0.96886 1.02254 0.92835 0.89595 0.93736 0.88548 0.83548 0.84099 0.81855 0.81137 0.85389 0.91524 0.87119 0.87256 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.96 13.97 21.65 0.30 -56.66 16 2 C -0.02 -1.03 5.32 84.86 0.45 -0.57 16 3 Si 0.94 43.34 24.92 68.60 1.71 45.05 16 4 H -0.27 -11.66 6.67 99.48 0.66 -11.00 16 5 H -0.25 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.31 -15.04 7.11 99.48 0.71 -14.33 16 7 C -0.25 -13.28 8.65 84.03 0.73 -12.55 16 8 H 0.04 2.49 7.31 -2.91 -0.02 2.47 16 9 N -0.58 -24.88 2.46 -682.34 -1.68 -26.56 16 10 C 0.15 5.58 4.99 85.63 0.43 6.01 16 11 C -0.12 -3.95 9.27 24.53 0.23 -3.72 16 12 C -0.14 -3.36 9.52 23.65 0.23 -3.14 16 13 C -0.02 -0.53 5.87 -20.12 -0.12 -0.65 16 14 C -0.11 -2.60 9.40 22.52 0.21 -2.39 16 15 C -0.11 -2.53 10.01 22.27 0.22 -2.31 16 16 C 0.04 0.99 7.31 22.46 0.16 1.16 16 17 F -0.14 -3.57 17.17 44.97 0.77 -2.80 16 18 C 0.06 1.39 7.30 22.37 0.16 1.55 16 19 F -0.14 -3.37 17.17 44.97 0.77 -2.60 16 20 C -0.11 -2.39 9.76 22.56 0.22 -2.17 16 21 C 0.11 3.91 6.60 44.99 0.30 4.21 16 22 C -0.20 -6.89 9.79 30.62 0.30 -6.59 16 23 C -0.21 -6.95 10.14 30.62 0.31 -6.64 16 24 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 25 H 0.09 2.55 7.71 -2.38 -0.02 2.53 16 26 H 0.05 1.85 2.94 -2.39 -0.01 1.84 16 27 H 0.10 3.48 6.03 -2.91 -0.02 3.46 16 28 H 0.15 2.82 7.87 -2.91 -0.02 2.80 16 29 H 0.14 3.57 6.16 -2.91 -0.02 3.56 16 30 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 31 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.13 3.64 8.11 -2.38 -0.02 3.62 16 33 H 0.07 2.85 6.82 -2.39 -0.02 2.83 16 34 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 35 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -62.55 312.31 6.77 -55.78 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 1.06 Total: 15.58 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 3.83 Total: -27.80 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -1.38 Total: -83.22 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 1.54 Total: -5.40 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.71 Total: 45.05 kcal Total: -62.55 6.77 -55.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289121095.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.922 kcal (2) G-P(sol) polarization free energy of solvation -62.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds