Wall clock time and date at job start Wed Apr 15 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.46910 * 110.99769 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.01566 * 34.93208 * 11 10 9 13 13 C 1.53882 * 110.02813 * 273.54421 * 11 10 9 14 14 C 1.54259 * 106.59758 * 240.71650 * 13 11 10 15 15 C 1.54889 * 104.19868 * 23.60861 * 14 13 11 16 16 C 1.54263 * 110.03087 * 156.37803 * 11 10 9 17 17 H 1.09001 * 110.48446 * 214.34524 * 16 11 10 18 18 C 1.50697 * 110.48839 * 336.99114 * 16 11 10 19 19 C 1.38240 * 119.98257 * 59.73217 * 18 16 11 20 20 C 1.38225 * 120.00791 * 179.72519 * 19 18 16 21 21 C 1.38350 * 119.98567 * 0.54216 * 20 19 18 22 22 Cl 1.73597 * 120.01126 * 179.70411 * 21 20 19 23 23 C 1.38351 * 119.97323 * 359.73290 * 21 20 19 24 24 C 1.38206 * 119.99015 * 359.97438 * 23 21 20 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.00894 * 111.00555 * 56.04687 * 10 9 7 29 29 H 1.09006 * 110.02913 * 359.97438 * 13 11 10 30 30 H 1.09002 * 110.03066 * 121.43083 * 13 11 10 31 31 H 1.08993 * 110.49202 * 142.28981 * 14 13 11 32 32 H 1.09004 * 110.48595 * 264.80251 * 14 13 11 33 33 H 1.09005 * 110.75759 * 80.37149 * 15 14 13 34 34 H 1.08999 * 110.76258 * 203.56079 * 15 14 13 35 35 H 1.07995 * 119.99827 * 359.97438 * 19 18 16 36 36 H 1.07997 * 120.00352 * 180.26945 * 20 19 18 37 37 H 1.08001 * 120.00650 * 179.97438 * 23 21 20 38 38 H 1.07995 * 119.99931 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2055 -3.6157 -0.0102 11 6 1.5051 -4.9071 -0.0167 12 1 0.5894 -4.8320 -0.6032 13 6 1.1747 -5.3346 1.4242 14 6 1.9010 -6.6742 1.6639 15 6 3.0644 -6.6639 0.6414 16 6 2.4207 -6.0019 -0.6022 17 1 1.8342 -6.7307 -1.1616 18 6 3.4801 -5.3889 -1.4813 19 6 4.3695 -4.4712 -0.9539 20 6 5.3450 -3.9129 -1.7584 21 6 5.4242 -4.2642 -3.0942 22 17 6.6443 -3.5576 -4.1070 23 6 4.5302 -5.1784 -3.6227 24 6 3.5590 -5.7405 -2.8159 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 2.8403 -3.5522 0.7714 29 1 1.5344 -4.5841 2.1281 30 1 0.0987 -5.4678 1.5366 31 1 2.2880 -6.7217 2.6816 32 1 1.2299 -7.5116 1.4725 33 1 3.8974 -6.0651 1.0100 34 1 3.3904 -7.6794 0.4167 35 1 4.3046 -4.1936 0.0877 36 1 6.0425 -3.1993 -1.3453 37 1 4.5913 -5.4526 -4.6655 38 1 2.8609 -6.4538 -3.2284 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425986841.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:40 Heat of formation + Delta-G solvation = 9.674292 kcal Electronic energy + Delta-G solvation = -19661.485230 eV Core-core repulsion = 16721.850988 eV Total energy + Delta-G solvation = -2939.634241 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.74838 -37.72126 -36.06402 -34.00669 -32.00521 -31.35321 -30.66090 -27.75033 -27.13831 -25.31826 -22.72966 -21.89776 -21.44639 -20.29175 -19.26399 -16.74069 -16.47935 -15.78915 -15.36231 -14.79467 -14.49827 -14.18787 -13.57590 -13.42677 -13.24976 -13.16864 -12.99600 -12.43877 -12.03741 -11.83809 -11.48591 -11.24465 -11.15045 -10.97590 -10.80709 -10.66756 -10.61727 -10.55203 -10.51398 -10.39347 -10.22934 -9.81567 -9.18518 -8.62483 -8.45354 -8.07887 -7.22008 -6.03053 -4.04637 1.57360 1.75991 2.44543 3.33327 3.37548 3.40867 4.03529 4.42940 4.74753 4.87725 4.94701 5.14471 5.24016 5.33161 5.38493 5.41497 5.57462 5.71411 5.75917 5.80929 5.85657 5.89183 6.01010 6.05009 6.06993 6.19795 6.33602 6.38638 6.43144 6.59448 6.60148 6.71398 7.05056 7.21071 7.28370 7.42114 7.78073 8.13122 8.35241 8.58905 9.03923 9.60245 11.07933 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.007148 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.334009 B = 3916.232087 C = 6061.462060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.060 0.940 9 C 0.195 3.805 10 N -0.674 5.674 11 C 0.087 3.913 12 H 0.075 0.925 13 C -0.151 4.151 14 C -0.122 4.122 15 C -0.116 4.116 16 C -0.049 4.049 17 H 0.078 0.922 18 C -0.041 4.041 19 C -0.041 4.041 20 C -0.117 4.117 21 C -0.038 4.038 22 Cl -0.092 7.092 23 C -0.123 4.123 24 C -0.113 4.113 25 H 0.261 0.739 26 H -0.014 1.014 27 H 0.026 0.974 28 H 0.327 0.673 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.645 -14.191 -1.563 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.079 0.921 9 C 0.069 3.931 10 N -0.304 5.304 11 C -0.024 4.024 12 H 0.093 0.907 13 C -0.191 4.191 14 C -0.160 4.160 15 C -0.154 4.154 16 C -0.068 4.068 17 H 0.096 0.904 18 C -0.041 4.041 19 C -0.059 4.059 20 C -0.136 4.136 21 C -0.064 4.064 22 Cl -0.063 7.063 23 C -0.142 4.142 24 C -0.131 4.131 25 H 0.071 0.929 26 H 0.004 0.996 27 H 0.044 0.956 28 H 0.145 0.855 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.657 -13.952 -2.337 16.086 hybrid contribution -0.041 1.206 0.706 1.398 sum 7.617 -12.746 -1.631 14.938 Atomic orbital electron populations 1.69950 1.06057 1.26820 1.50928 1.24961 0.94827 0.99262 0.95387 0.86602 0.79499 0.82899 0.78665 1.20136 1.21377 1.20298 1.21122 0.93369 0.90266 1.50289 0.92137 1.19552 0.90594 0.87323 0.95639 1.61122 1.20380 1.01005 1.47876 1.22113 0.95778 0.90852 0.93697 0.90710 1.22951 1.00383 0.97186 0.98562 1.22315 0.97244 0.97638 0.98790 1.22607 0.97840 1.00178 0.94741 1.21106 0.94560 0.96432 0.94726 0.90394 1.19534 0.94922 0.96240 0.93427 1.20885 0.91468 0.93262 1.00327 1.20993 0.99951 1.00802 0.91885 1.20808 0.94066 0.99634 0.91924 1.98332 1.55108 1.83657 1.69219 1.20788 0.95735 0.97770 0.99871 1.20880 0.98171 1.00631 0.93410 0.92918 0.99581 0.95622 0.85464 0.91493 0.92097 0.92067 0.91986 0.91136 0.91862 0.85113 0.85689 0.85994 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.17 9.32 -34.44 -0.32 -14.49 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.20 4.92 5.26 -4.98 -0.03 4.89 16 10 N -0.67 -13.16 3.37 -106.80 -0.36 -13.52 16 11 C 0.09 1.41 3.09 -66.59 -0.21 1.21 16 12 H 0.07 1.33 7.83 -51.93 -0.41 0.92 16 13 C -0.15 -2.17 6.37 -25.61 -0.16 -2.33 16 14 C -0.12 -1.39 6.83 -25.08 -0.17 -1.56 16 15 C -0.12 -1.33 6.27 -24.74 -0.15 -1.48 16 16 C -0.05 -0.66 3.08 -90.11 -0.28 -0.93 16 17 H 0.08 0.95 7.94 -51.93 -0.41 0.53 16 18 C -0.04 -0.60 4.67 -104.62 -0.49 -1.09 16 19 C -0.04 -0.63 7.13 -39.59 -0.28 -0.91 16 20 C -0.12 -1.83 9.83 -39.54 -0.39 -2.22 16 21 C -0.04 -0.58 6.32 -39.50 -0.25 -0.83 16 22 Cl -0.09 -1.30 28.96 -51.86 -1.50 -2.80 16 23 C -0.12 -1.74 9.83 -39.55 -0.39 -2.13 16 24 C -0.11 -1.57 9.68 -39.59 -0.38 -1.95 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H -0.01 -0.37 8.10 -51.93 -0.42 -0.79 16 27 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 28 H 0.33 6.10 6.49 -39.29 -0.25 5.84 16 29 H 0.07 1.04 7.59 -51.93 -0.39 0.65 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.83 6.82 -51.93 -0.35 0.47 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.13 1.98 5.32 -52.49 -0.28 1.70 16 36 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.12 1.41 7.98 -52.49 -0.42 0.99 16 LS Contribution 320.55 15.07 4.83 4.83 Total: -1.00 -29.24 320.55 -10.35 -39.59 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.44 Total: 3.45 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -3.60 Total: -22.31 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.38 Total: -39.53 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.50 Total: -2.80 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.24 -10.35 -39.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425986841.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.268 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds