Wall clock time and date at job start Wed Apr 15 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.46910 * 110.99769 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.01566 * 34.93208 * 11 10 9 13 13 C 1.53882 * 110.02813 * 273.54421 * 11 10 9 14 14 C 1.54259 * 106.59758 * 240.71650 * 13 11 10 15 15 C 1.54889 * 104.19868 * 23.60861 * 14 13 11 16 16 C 1.54263 * 110.03087 * 156.37803 * 11 10 9 17 17 H 1.09001 * 110.48446 * 214.34524 * 16 11 10 18 18 C 1.50697 * 110.48839 * 336.99114 * 16 11 10 19 19 C 1.38240 * 119.98257 * 59.73217 * 18 16 11 20 20 C 1.38225 * 120.00791 * 179.72519 * 19 18 16 21 21 C 1.38350 * 119.98567 * 0.54216 * 20 19 18 22 22 Cl 1.73597 * 120.01126 * 179.70411 * 21 20 19 23 23 C 1.38351 * 119.97323 * 359.73290 * 21 20 19 24 24 C 1.38206 * 119.99015 * 359.97438 * 23 21 20 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.00894 * 111.00555 * 56.04687 * 10 9 7 29 29 H 1.09006 * 110.02913 * 359.97438 * 13 11 10 30 30 H 1.09002 * 110.03066 * 121.43083 * 13 11 10 31 31 H 1.08993 * 110.49202 * 142.28981 * 14 13 11 32 32 H 1.09004 * 110.48595 * 264.80251 * 14 13 11 33 33 H 1.09005 * 110.75759 * 80.37149 * 15 14 13 34 34 H 1.08999 * 110.76258 * 203.56079 * 15 14 13 35 35 H 1.07995 * 119.99827 * 359.97438 * 19 18 16 36 36 H 1.07997 * 120.00352 * 180.26945 * 20 19 18 37 37 H 1.08001 * 120.00650 * 179.97438 * 23 21 20 38 38 H 1.07995 * 119.99931 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2055 -3.6157 -0.0102 11 6 1.5051 -4.9071 -0.0167 12 1 0.5894 -4.8320 -0.6032 13 6 1.1747 -5.3346 1.4242 14 6 1.9010 -6.6742 1.6639 15 6 3.0644 -6.6639 0.6414 16 6 2.4207 -6.0019 -0.6022 17 1 1.8342 -6.7307 -1.1616 18 6 3.4801 -5.3889 -1.4813 19 6 4.3695 -4.4712 -0.9539 20 6 5.3450 -3.9129 -1.7584 21 6 5.4242 -4.2642 -3.0942 22 17 6.6443 -3.5576 -4.1070 23 6 4.5302 -5.1784 -3.6227 24 6 3.5590 -5.7405 -2.8159 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 2.8403 -3.5522 0.7714 29 1 1.5344 -4.5841 2.1281 30 1 0.0987 -5.4678 1.5366 31 1 2.2880 -6.7217 2.6816 32 1 1.2299 -7.5116 1.4725 33 1 3.8974 -6.0651 1.0100 34 1 3.3904 -7.6794 0.4167 35 1 4.3046 -4.1936 0.0877 36 1 6.0425 -3.1993 -1.3453 37 1 4.5913 -5.4526 -4.6655 38 1 2.8609 -6.4538 -3.2284 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425986841.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:40 Heat of formation + Delta-G solvation = -4.606294 kcal Electronic energy + Delta-G solvation = -19662.104482 eV Core-core repulsion = 16721.850988 eV Total energy + Delta-G solvation = -2940.253494 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.91473 -38.90716 -37.20537 -35.79749 -33.90007 -32.46344 -31.79637 -29.39131 -28.26011 -26.96459 -24.22427 -23.20387 -22.92577 -21.35983 -20.51066 -18.48741 -17.87178 -17.11419 -16.72698 -16.39503 -15.88403 -15.33494 -15.06227 -14.86116 -14.50053 -14.35346 -14.21995 -14.07836 -13.46719 -13.31600 -12.99101 -12.86235 -12.59000 -12.40289 -12.29129 -12.00110 -11.89940 -11.78144 -11.67210 -11.59198 -11.49552 -11.36158 -11.16193 -10.64315 -9.76955 -9.23734 -8.85946 -8.21200 -6.30744 0.42004 0.62137 1.30444 1.38843 1.41942 1.49296 2.39103 2.88563 3.12551 3.51142 3.79103 3.87228 3.95710 4.14349 4.18811 4.32239 4.50783 4.60802 4.62313 4.70613 4.72372 4.80578 4.87647 4.97552 5.09159 5.10671 5.18524 5.24803 5.27453 5.34933 5.39743 5.46010 5.51815 5.55670 5.64702 5.91322 6.06146 6.12102 6.50806 6.78618 6.93977 7.39844 8.89904 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.007148 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.334009 B = 3916.232087 C = 6061.462060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.527 4.527 8 H 0.063 0.937 9 C 0.214 3.786 10 N -0.665 5.665 11 C 0.081 3.919 12 H 0.053 0.947 13 C -0.150 4.150 14 C -0.111 4.111 15 C -0.110 4.110 16 C -0.041 4.041 17 H 0.098 0.902 18 C -0.051 4.051 19 C -0.054 4.054 20 C -0.133 4.133 21 C -0.051 4.051 22 Cl -0.086 7.086 23 C -0.126 4.126 24 C -0.115 4.115 25 H 0.263 0.737 26 H -0.040 1.040 27 H -0.009 1.009 28 H 0.333 0.667 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.141 0.859 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.715 -15.441 -1.659 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.565 4.565 8 H 0.081 0.919 9 C 0.086 3.914 10 N -0.295 5.295 11 C -0.030 4.030 12 H 0.071 0.929 13 C -0.189 4.189 14 C -0.149 4.149 15 C -0.147 4.147 16 C -0.060 4.060 17 H 0.116 0.884 18 C -0.052 4.052 19 C -0.072 4.072 20 C -0.152 4.152 21 C -0.078 4.078 22 Cl -0.058 7.058 23 C -0.145 4.145 24 C -0.133 4.133 25 H 0.072 0.928 26 H -0.022 1.022 27 H 0.009 0.991 28 H 0.152 0.848 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.747 -15.228 -2.426 17.728 hybrid contribution -0.389 1.553 0.702 1.748 sum 8.358 -13.675 -1.724 16.119 Atomic orbital electron populations 1.70081 1.07692 1.27782 1.51940 1.25860 0.95661 1.03060 0.94938 0.85530 0.78246 0.78361 0.79060 1.19780 1.20956 1.18949 1.21505 0.93681 0.91469 1.49838 0.91858 1.19119 0.90596 0.88978 0.92659 1.61024 1.19298 1.00963 1.48263 1.22233 0.95558 0.90141 0.95084 0.92902 1.22867 1.00680 0.98752 0.96604 1.22277 0.97080 0.95954 0.99571 1.22591 0.97490 1.01194 0.93420 1.21092 0.93869 0.95471 0.95557 0.88407 1.19748 0.95014 0.96242 0.94155 1.20954 0.92033 0.93936 1.00321 1.21133 1.00400 1.01283 0.92417 1.20985 0.94658 1.00141 0.92002 1.98327 1.54897 1.83631 1.68924 1.21086 0.95281 0.97187 1.00928 1.21216 0.98318 1.00751 0.93028 0.92821 1.02206 0.99116 0.84776 0.93231 0.92361 0.90787 0.90172 0.91558 0.89428 0.85418 0.85507 0.84081 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.53 -29.71 9.32 25.60 0.24 -29.47 16 8 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 9 C 0.21 11.22 5.26 85.56 0.45 11.67 16 10 N -0.67 -26.49 3.37 -491.81 -1.66 -28.15 16 11 C 0.08 2.61 3.09 45.64 0.14 2.75 16 12 H 0.05 1.93 7.83 -2.39 -0.02 1.91 16 13 C -0.15 -4.21 6.37 31.32 0.20 -4.01 16 14 C -0.11 -2.23 6.83 31.67 0.22 -2.01 16 15 C -0.11 -2.19 6.27 31.89 0.20 -1.99 16 16 C -0.04 -1.02 3.08 -10.47 -0.03 -1.05 16 17 H 0.10 2.08 7.94 -2.39 -0.02 2.06 16 18 C -0.05 -1.43 4.67 -19.86 -0.09 -1.52 16 19 C -0.05 -1.63 7.13 22.27 0.16 -1.47 16 20 C -0.13 -4.10 9.83 22.29 0.22 -3.88 16 21 C -0.05 -1.52 6.32 22.32 0.14 -1.37 16 22 Cl -0.09 -2.36 28.96 -2.72 -0.08 -2.43 16 23 C -0.13 -3.36 9.83 22.29 0.22 -3.14 16 24 C -0.12 -2.97 9.68 22.26 0.22 -2.75 16 25 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 26 H -0.04 -2.25 8.10 -2.38 -0.02 -2.26 16 27 H -0.01 -0.55 8.07 -2.39 -0.02 -0.57 16 28 H 0.33 12.62 6.49 -89.70 -0.58 12.04 16 29 H 0.05 1.56 7.59 -2.38 -0.02 1.54 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.07 1.40 6.82 -2.38 -0.02 1.39 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.13 3.84 5.32 -2.91 -0.02 3.83 16 36 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 37 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 38 H 0.15 2.95 7.98 -2.91 -0.02 2.93 16 Total: -1.00 -63.62 320.55 3.78 -59.84 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.47 Total: 18.07 kcal Atomic # 6 Polarization: -40.36 SS G_CDS: 2.74 Total: -37.63 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -1.37 Total: -84.72 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.08 Total: -2.43 kcal Total: -63.62 3.78 -59.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425986841.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.230 kcal (2) G-P(sol) polarization free energy of solvation -63.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds