Wall clock time and date at job start Wed Apr 15 2020 11:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48498 * 109.47050 * 269.99787 * 3 2 1 5 5 H 1.48495 * 109.47374 * 30.00218 * 3 2 1 6 6 H 1.48504 * 109.47091 * 150.00178 * 3 2 1 7 7 C 1.37882 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99792 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00516 * 179.97438 * 7 2 1 10 10 N 1.46896 * 109.47371 * 180.02562 * 9 7 2 11 11 C 1.46905 * 111.00101 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.01582 * 33.60629 * 11 10 9 13 13 C 1.54264 * 110.02878 * 272.16111 * 11 10 9 14 14 C 1.54881 * 104.20019 * 264.32596 * 13 11 10 15 15 C 1.54969 * 102.77784 * 322.08506 * 14 13 11 16 16 C 1.53876 * 110.03272 * 154.99911 * 11 10 9 17 17 H 1.08999 * 110.03236 * 359.94383 * 16 11 10 18 18 C 1.50701 * 110.02846 * 238.56782 * 16 11 10 19 19 C 1.38236 * 120.00725 * 300.70864 * 18 16 11 20 20 C 1.38224 * 120.01528 * 179.97438 * 19 18 16 21 21 C 1.38264 * 120.02372 * 0.02562 * 20 19 18 22 22 C 1.38199 * 120.01177 * 359.67909 * 21 20 19 23 23 C 1.38335 * 120.00592 * 120.69416 * 18 16 11 24 24 Cl 1.73599 * 120.01202 * 0.02562 * 23 18 16 25 25 H 0.96998 * 119.99986 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46964 * 59.99962 * 9 7 2 27 27 H 1.08997 * 109.47120 * 300.00375 * 9 7 2 28 28 H 1.00898 * 110.99938 * 56.04565 * 10 9 7 29 29 H 1.09000 * 110.49022 * 23.00898 * 13 11 10 30 30 H 1.09000 * 110.48672 * 145.64040 * 13 11 10 31 31 H 1.08999 * 110.75793 * 80.37210 * 14 13 11 32 32 H 1.09003 * 110.75726 * 203.74423 * 14 13 11 33 33 H 1.08996 * 110.47438 * 279.23543 * 15 14 13 34 34 H 1.08996 * 110.53123 * 156.56530 * 15 14 13 35 35 H 1.08003 * 119.99208 * 359.96515 * 19 18 16 36 36 H 1.07991 * 119.98575 * 180.02562 * 20 19 18 37 37 H 1.07997 * 119.99322 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00335 * 180.30335 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5790 0.0001 11 6 5.4698 -2.6182 0.0001 12 1 5.8654 -1.7755 0.5669 13 6 5.9994 -2.5778 -1.4482 14 6 6.2294 -4.0660 -1.8103 15 6 6.7729 -4.6608 -0.4865 16 6 5.9617 -3.9420 0.6112 17 1 5.1109 -4.5549 0.9087 18 6 6.8399 -3.6649 1.8042 19 6 7.9905 -2.9133 1.6559 20 6 8.7958 -2.6586 2.7501 21 6 8.4513 -3.1558 3.9934 22 6 7.2979 -3.9021 4.1440 23 6 6.4944 -4.1623 3.0479 24 17 5.0497 -5.1065 3.2348 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6797 0.8894 27 1 3.8745 -0.6808 -0.8905 28 1 3.6254 -3.0955 -0.7810 29 1 5.2587 -2.1334 -2.1130 30 1 6.9371 -2.0241 -1.4961 31 1 5.2914 -4.5445 -2.0916 32 1 6.9667 -4.1601 -2.6076 33 1 7.8357 -4.4441 -0.3792 34 1 6.5960 -5.7357 -0.4494 35 1 8.2605 -2.5251 0.6848 36 1 9.6944 -2.0710 2.6338 37 1 9.0810 -2.9568 4.8478 38 1 7.0263 -4.2863 5.1161 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426004225.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:43 Heat of formation + Delta-G solvation = 4.633668 kcal Electronic energy + Delta-G solvation = -19538.252578 eV Core-core repulsion = 16598.399759 eV Total energy + Delta-G solvation = -2939.852819 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.95965 -37.88611 -36.26272 -34.12987 -32.12087 -31.66886 -30.71696 -28.14690 -27.53061 -25.39500 -22.93964 -22.15706 -21.30957 -20.18328 -19.38969 -17.21188 -16.78019 -15.80114 -15.63039 -14.92395 -14.69737 -14.22571 -13.80186 -13.70385 -13.59464 -13.50698 -13.00887 -12.46317 -12.12387 -12.00084 -11.67062 -11.53329 -11.38309 -11.24289 -11.00791 -10.91774 -10.69974 -10.61538 -10.50594 -10.20957 -10.12534 -9.75683 -9.26471 -8.87107 -8.58949 -8.54981 -7.40233 -6.03490 -4.00782 1.17440 1.25338 2.30721 3.29049 3.36849 3.40030 3.60662 4.43904 4.59489 4.65215 4.86581 4.87338 4.92318 5.13991 5.25610 5.29071 5.36897 5.39571 5.62432 5.67791 5.75860 5.79016 5.82763 5.90299 5.98963 6.01375 6.09109 6.21716 6.32442 6.36341 6.37704 6.48578 6.67483 6.79370 6.84882 7.06346 7.65686 7.95729 8.39627 8.68742 9.05340 9.58907 11.09957 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016213 B = 0.005354 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.611345 B = 5228.262705 C = 5534.586260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.513 4.513 8 H 0.079 0.921 9 C 0.166 3.834 10 N -0.669 5.669 11 C 0.092 3.908 12 H 0.072 0.928 13 C -0.156 4.156 14 C -0.121 4.121 15 C -0.114 4.114 16 C -0.059 4.059 17 H 0.105 0.895 18 C -0.049 4.049 19 C -0.108 4.108 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.112 4.112 23 C -0.030 4.030 24 Cl -0.059 7.059 25 H 0.263 0.737 26 H 0.024 0.976 27 H -0.021 1.021 28 H 0.336 0.664 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.422 -8.645 3.351 21.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.551 4.551 8 H 0.097 0.903 9 C 0.038 3.962 10 N -0.298 5.298 11 C -0.019 4.019 12 H 0.090 0.910 13 C -0.196 4.196 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.078 4.078 17 H 0.123 0.877 18 C -0.050 4.050 19 C -0.126 4.126 20 C -0.135 4.135 21 C -0.138 4.138 22 C -0.131 4.131 23 C -0.057 4.057 24 Cl -0.030 7.030 25 H 0.073 0.927 26 H 0.042 0.958 27 H -0.004 1.004 28 H 0.154 0.846 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 19.049 -8.663 4.068 21.319 hybrid contribution 0.437 1.280 -0.801 1.572 sum 19.487 -7.383 3.267 21.093 Atomic orbital electron populations 1.69899 1.06140 1.26792 1.51171 1.24896 0.94720 0.98869 0.94822 0.86847 0.80402 0.84018 0.78382 1.20393 1.21179 1.19191 1.21069 0.89003 0.94759 1.50312 0.90299 1.20005 0.96522 0.85114 0.94549 1.60538 1.03549 1.16458 1.49293 1.22205 0.90511 0.95723 0.93459 0.90957 1.23146 1.01288 0.96600 0.98526 1.22469 1.00894 0.95810 0.96705 1.22484 0.99109 0.99468 0.94131 1.21099 0.97123 0.98083 0.91539 0.87657 1.19818 0.95308 0.96137 0.93744 1.20993 0.94034 0.98295 0.99295 1.21186 0.99823 0.99746 0.92794 1.21031 0.96687 0.98399 0.97694 1.21031 0.94709 0.99527 0.97787 1.20904 0.90595 0.99397 0.94802 1.98378 1.36510 1.70740 1.97379 0.92709 0.95770 1.00379 0.84622 0.91187 0.92030 0.91212 0.91938 0.91691 0.91644 0.85341 0.85779 0.85542 0.85234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 7 C -0.51 -14.84 9.87 -34.44 -0.34 -15.18 16 8 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 9 C 0.17 4.06 4.33 -4.98 -0.02 4.04 16 10 N -0.67 -13.80 6.10 -106.81 -0.65 -14.45 16 11 C 0.09 1.54 2.67 -66.59 -0.18 1.36 16 12 H 0.07 1.29 6.95 -51.93 -0.36 0.93 16 13 C -0.16 -2.21 6.24 -25.08 -0.16 -2.36 16 14 C -0.12 -1.45 6.91 -24.70 -0.17 -1.62 16 15 C -0.11 -1.35 6.27 -25.03 -0.16 -1.51 16 16 C -0.06 -0.86 2.81 -90.65 -0.25 -1.11 16 17 H 0.11 1.70 5.99 -51.93 -0.31 1.39 16 18 C -0.05 -0.68 4.69 -104.59 -0.49 -1.17 16 19 C -0.11 -1.30 8.11 -39.59 -0.32 -1.62 16 20 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 21 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 22 C -0.11 -1.33 9.83 -39.55 -0.39 -1.72 16 23 C -0.03 -0.42 6.31 -39.50 -0.25 -0.67 16 24 Cl -0.06 -0.87 27.02 -51.86 -1.40 -2.27 16 25 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.02 0.62 7.12 -51.93 -0.37 0.25 16 27 H -0.02 -0.52 7.38 -51.93 -0.38 -0.90 16 28 H 0.34 6.73 8.43 -39.29 -0.33 6.40 16 29 H 0.07 1.09 7.81 -51.93 -0.41 0.69 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.70 6.91 -51.93 -0.36 0.34 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.13 1.38 7.78 -52.48 -0.41 0.97 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 320.40 15.07 4.83 4.83 Total: -1.00 -31.04 320.40 -10.22 -41.26 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.48 Total: 3.54 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -3.62 Total: -22.93 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.12 Total: -41.69 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.40 Total: -2.27 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.04 -10.22 -41.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426004225.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.890 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds