Wall clock time and date at job start Wed Apr 15 2020 11:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48498 * 109.47050 * 269.99787 * 3 2 1 5 5 H 1.48495 * 109.47374 * 30.00218 * 3 2 1 6 6 H 1.48504 * 109.47091 * 150.00178 * 3 2 1 7 7 C 1.37882 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99792 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00516 * 179.97438 * 7 2 1 10 10 N 1.46896 * 109.47371 * 180.02562 * 9 7 2 11 11 C 1.46905 * 111.00101 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.01582 * 33.60629 * 11 10 9 13 13 C 1.54264 * 110.02878 * 272.16111 * 11 10 9 14 14 C 1.54881 * 104.20019 * 264.32596 * 13 11 10 15 15 C 1.54969 * 102.77784 * 322.08506 * 14 13 11 16 16 C 1.53876 * 110.03272 * 154.99911 * 11 10 9 17 17 H 1.08999 * 110.03236 * 359.94383 * 16 11 10 18 18 C 1.50701 * 110.02846 * 238.56782 * 16 11 10 19 19 C 1.38236 * 120.00725 * 300.70864 * 18 16 11 20 20 C 1.38224 * 120.01528 * 179.97438 * 19 18 16 21 21 C 1.38264 * 120.02372 * 0.02562 * 20 19 18 22 22 C 1.38199 * 120.01177 * 359.67909 * 21 20 19 23 23 C 1.38335 * 120.00592 * 120.69416 * 18 16 11 24 24 Cl 1.73599 * 120.01202 * 0.02562 * 23 18 16 25 25 H 0.96998 * 119.99986 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46964 * 59.99962 * 9 7 2 27 27 H 1.08997 * 109.47120 * 300.00375 * 9 7 2 28 28 H 1.00898 * 110.99938 * 56.04565 * 10 9 7 29 29 H 1.09000 * 110.49022 * 23.00898 * 13 11 10 30 30 H 1.09000 * 110.48672 * 145.64040 * 13 11 10 31 31 H 1.08999 * 110.75793 * 80.37210 * 14 13 11 32 32 H 1.09003 * 110.75726 * 203.74423 * 14 13 11 33 33 H 1.08996 * 110.47438 * 279.23543 * 15 14 13 34 34 H 1.08996 * 110.53123 * 156.56530 * 15 14 13 35 35 H 1.08003 * 119.99208 * 359.96515 * 19 18 16 36 36 H 1.07991 * 119.98575 * 180.02562 * 20 19 18 37 37 H 1.07997 * 119.99322 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00335 * 180.30335 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5790 0.0001 11 6 5.4698 -2.6182 0.0001 12 1 5.8654 -1.7755 0.5669 13 6 5.9994 -2.5778 -1.4482 14 6 6.2294 -4.0660 -1.8103 15 6 6.7729 -4.6608 -0.4865 16 6 5.9617 -3.9420 0.6112 17 1 5.1109 -4.5549 0.9087 18 6 6.8399 -3.6649 1.8042 19 6 7.9905 -2.9133 1.6559 20 6 8.7958 -2.6586 2.7501 21 6 8.4513 -3.1558 3.9934 22 6 7.2979 -3.9021 4.1440 23 6 6.4944 -4.1623 3.0479 24 17 5.0497 -5.1065 3.2348 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6797 0.8894 27 1 3.8745 -0.6808 -0.8905 28 1 3.6254 -3.0955 -0.7810 29 1 5.2587 -2.1334 -2.1130 30 1 6.9371 -2.0241 -1.4961 31 1 5.2914 -4.5445 -2.0916 32 1 6.9667 -4.1601 -2.6076 33 1 7.8357 -4.4441 -0.3792 34 1 6.5960 -5.7357 -0.4494 35 1 8.2605 -2.5251 0.6848 36 1 9.6944 -2.0710 2.6338 37 1 9.0810 -2.9568 4.8478 38 1 7.0263 -4.2863 5.1161 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426004225.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:42 Heat of formation + Delta-G solvation = -13.640481 kcal Electronic energy + Delta-G solvation = -19539.045005 eV Core-core repulsion = 16598.399759 eV Total energy + Delta-G solvation = -2940.645246 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.97137 -39.00015 -37.30374 -35.88062 -34.11624 -32.67588 -31.59767 -29.87434 -28.55996 -26.95622 -23.84777 -23.52716 -22.83056 -21.33321 -20.59399 -18.90786 -18.14205 -16.92391 -16.85580 -16.23747 -15.97467 -15.66450 -15.17909 -15.04376 -14.66783 -14.59888 -14.42813 -14.05789 -13.80894 -13.25268 -12.95662 -12.83036 -12.53926 -12.43248 -12.20156 -12.14488 -11.97172 -11.92678 -11.78908 -11.63517 -11.52651 -11.40600 -11.20054 -10.82810 -9.78329 -9.54500 -9.01924 -8.31203 -6.35082 0.26835 0.36582 1.29787 1.31136 1.34066 1.45172 2.32244 2.71902 3.02740 3.40019 3.61116 3.78498 3.93717 4.05684 4.19286 4.20925 4.40692 4.48110 4.55717 4.63790 4.66076 4.70679 4.79560 4.84957 4.85542 4.97062 5.06409 5.09697 5.12407 5.27263 5.31268 5.39674 5.43343 5.52146 5.53394 5.63842 5.95474 6.01398 6.59550 6.68658 6.80076 7.29887 8.85790 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016213 B = 0.005354 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.611345 B = 5228.262705 C = 5534.586260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.949 3.051 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.254 1.254 7 C -0.526 4.526 8 H 0.036 0.964 9 C 0.181 3.819 10 N -0.680 5.680 11 C 0.091 3.909 12 H 0.060 0.940 13 C -0.152 4.152 14 C -0.115 4.115 15 C -0.106 4.106 16 C -0.055 4.055 17 H 0.082 0.918 18 C -0.070 4.070 19 C -0.114 4.114 20 C -0.113 4.113 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.054 4.054 24 Cl -0.081 7.081 25 H 0.267 0.733 26 H 0.016 0.984 27 H -0.014 1.014 28 H 0.336 0.664 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.143 0.857 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.083 -7.546 3.276 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.772 3.228 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.178 1.178 7 C -0.564 4.564 8 H 0.054 0.946 9 C 0.053 3.947 10 N -0.310 5.310 11 C -0.020 4.020 12 H 0.078 0.922 13 C -0.191 4.191 14 C -0.153 4.153 15 C -0.143 4.143 16 C -0.074 4.074 17 H 0.100 0.900 18 C -0.071 4.071 19 C -0.132 4.132 20 C -0.131 4.131 21 C -0.133 4.133 22 C -0.139 4.139 23 C -0.081 4.081 24 Cl -0.052 7.052 25 H 0.076 0.924 26 H 0.034 0.966 27 H 0.004 0.996 28 H 0.154 0.846 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.160 0.840 36 H 0.174 0.826 37 H 0.176 0.824 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 22.733 -7.590 3.990 24.296 hybrid contribution -0.700 0.866 -0.722 1.327 sum 22.033 -6.724 3.268 23.267 Atomic orbital electron populations 1.70053 1.08139 1.28165 1.52445 1.25865 0.95621 1.03221 0.94197 0.85685 0.79269 0.78525 0.79276 1.18799 1.20564 1.17756 1.21346 0.91475 0.93343 1.50227 0.94607 1.19678 0.93486 0.87370 0.94184 1.60437 1.06669 1.14227 1.49671 1.22292 0.87635 0.96637 0.95390 0.92152 1.23073 1.01573 0.98385 0.96050 1.22451 1.01275 0.93998 0.97530 1.22452 0.99610 0.99475 0.92782 1.20958 0.97059 0.96590 0.92809 0.89981 1.19873 0.96298 0.97607 0.93304 1.21217 0.93482 0.97848 1.00652 1.21593 1.00320 0.99020 0.92161 1.21446 0.96050 0.96915 0.98916 1.21299 0.95098 0.99804 0.97741 1.21150 0.90585 1.00487 0.95864 1.98364 1.37958 1.71432 1.97453 0.92377 0.96635 0.99620 0.84643 0.92949 0.89798 0.92155 0.89377 0.89879 0.91066 0.83971 0.82633 0.82411 0.84094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 2 C 0.01 0.50 5.47 84.66 0.46 0.96 16 3 Si 0.95 45.16 27.47 68.60 1.88 47.04 16 4 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 7 C -0.53 -31.44 9.87 25.60 0.25 -31.18 16 8 H 0.04 2.38 8.06 -2.91 -0.02 2.35 16 9 C 0.18 8.97 4.33 85.56 0.37 9.34 16 10 N -0.68 -28.70 6.10 -491.85 -3.00 -31.70 16 11 C 0.09 2.96 2.67 45.64 0.12 3.09 16 12 H 0.06 2.10 6.95 -2.39 -0.02 2.08 16 13 C -0.15 -4.01 6.24 31.67 0.20 -3.82 16 14 C -0.12 -2.51 6.91 31.91 0.22 -2.29 16 15 C -0.11 -2.29 6.27 31.70 0.20 -2.09 16 16 C -0.06 -1.56 2.81 -10.81 -0.03 -1.59 16 17 H 0.08 2.72 5.99 -2.39 -0.01 2.70 16 18 C -0.07 -1.86 4.69 -19.84 -0.09 -1.95 16 19 C -0.11 -2.42 8.11 22.27 0.18 -2.24 16 20 C -0.11 -1.95 10.05 22.27 0.22 -1.72 16 21 C -0.12 -2.01 10.05 22.27 0.22 -1.78 16 22 C -0.12 -2.68 9.83 22.29 0.22 -2.46 16 23 C -0.05 -1.49 6.31 22.32 0.14 -1.35 16 24 Cl -0.08 -2.45 27.02 -2.72 -0.07 -2.52 16 25 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 26 H 0.02 0.80 7.12 -2.39 -0.02 0.78 16 27 H -0.01 -0.66 7.38 -2.39 -0.02 -0.67 16 28 H 0.34 13.97 8.43 -89.70 -0.76 13.22 16 29 H 0.05 1.58 7.81 -2.39 -0.02 1.56 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.52 6.91 -2.39 -0.02 1.50 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 35 H 0.14 2.55 7.78 -2.91 -0.02 2.52 16 36 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 38 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -69.43 320.40 2.04 -67.39 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.24 Total: 19.11 kcal Atomic # 6 Polarization: -41.79 SS G_CDS: 2.69 Total: -39.10 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -2.70 Total: -91.92 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.04 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -0.07 Total: -2.52 kcal Total: -69.43 2.04 -67.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426004225.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.749 kcal (2) G-P(sol) polarization free energy of solvation -69.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds