Wall clock time and date at job start Wed Apr 15 2020 11:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00115 * 2 1 4 4 H 1.48492 * 109.47523 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47124 * 300.00433 * 3 2 1 6 6 H 1.48503 * 109.46977 * 60.00362 * 3 2 1 7 7 C 1.37877 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00830 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99662 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47152 * 180.02562 * 9 7 2 11 11 C 1.46902 * 111.00149 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.05134 * 33.57783 * 11 10 9 13 13 C 1.54268 * 110.02977 * 272.16846 * 11 10 9 14 14 C 1.54894 * 104.19421 * 217.10526 * 13 11 10 15 15 C 1.54890 * 102.74882 * 37.93754 * 14 13 11 16 16 C 1.53864 * 110.03216 * 155.00083 * 11 10 9 17 17 H 1.09001 * 110.07165 * 238.58914 * 16 11 10 18 18 C 1.50702 * 110.03518 * 359.97438 * 16 11 10 19 19 C 1.38237 * 120.00143 * 58.64711 * 18 16 11 20 20 C 1.38221 * 120.01233 * 179.97438 * 19 18 16 21 21 C 1.38263 * 120.02714 * 359.97438 * 20 19 18 22 22 C 1.38195 * 120.01003 * 359.97438 * 21 20 19 23 23 C 1.38326 * 120.01026 * 238.62311 * 18 16 11 24 24 Cl 1.73600 * 120.01508 * 0.02562 * 23 18 16 25 25 H 0.97001 * 120.00426 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47213 * 59.99785 * 9 7 2 27 27 H 1.09004 * 109.47065 * 299.99583 * 9 7 2 28 28 H 1.00901 * 110.99932 * 56.04570 * 10 9 7 29 29 H 1.08994 * 110.48912 * 98.42839 * 13 11 10 30 30 H 1.09002 * 110.59911 * 335.83392 * 13 11 10 31 31 H 1.09006 * 110.75022 * 279.62786 * 14 13 11 32 32 H 1.08989 * 110.91862 * 156.33080 * 14 13 11 33 33 H 1.08997 * 110.48609 * 203.38232 * 15 14 13 34 34 H 1.09001 * 110.59615 * 80.79273 * 15 14 13 35 35 H 1.08003 * 119.99789 * 359.97438 * 19 18 16 36 36 H 1.08002 * 119.98422 * 180.02562 * 20 19 18 37 37 H 1.07999 * 119.99487 * 180.27557 * 21 20 19 38 38 H 1.07996 * 120.00042 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9071 0.0001 12 1 0.5772 -4.8291 -0.5659 13 6 1.2059 -5.3450 1.4486 14 6 1.4051 -6.8810 1.4300 15 6 2.6218 -7.0564 0.4877 16 6 2.4057 -5.9951 -0.6108 17 1 1.9151 -6.4455 -1.4737 18 6 3.7279 -5.4003 -1.0220 19 6 4.5262 -4.7744 -0.0828 20 6 5.7392 -4.2293 -0.4596 21 6 6.1552 -4.3101 -1.7757 22 6 5.3584 -4.9366 -2.7151 23 6 4.1433 -5.4810 -2.3389 24 17 3.1413 -6.2669 -3.5189 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8902 27 1 0.6248 -2.5571 0.8898 28 1 2.8406 -3.5486 0.7808 29 1 0.1792 -5.0968 1.7177 30 1 1.9047 -4.8782 2.1427 31 1 0.5257 -7.3796 1.0222 32 1 1.6320 -7.2561 2.4278 33 1 2.6284 -8.0570 0.0555 34 1 3.5520 -6.8670 1.0233 35 1 4.2021 -4.7113 0.9455 36 1 6.3627 -3.7408 0.2746 37 1 7.1051 -3.8880 -2.0686 38 1 5.6837 -5.0000 -3.7430 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426004228.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:51 Heat of formation + Delta-G solvation = 9.858124 kcal Electronic energy + Delta-G solvation = -19904.315597 eV Core-core repulsion = 16964.689327 eV Total energy + Delta-G solvation = -2939.626270 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.83338 -37.56396 -36.11592 -34.03248 -32.01812 -31.54320 -30.37516 -27.72139 -27.29024 -25.14184 -22.68386 -21.95069 -21.44323 -20.43109 -19.17084 -16.72540 -16.45745 -15.80156 -15.33057 -14.79221 -14.50275 -14.33836 -13.66443 -13.45196 -13.34285 -12.99205 -12.93170 -12.38466 -11.90684 -11.67438 -11.53106 -11.22213 -11.10459 -11.07059 -10.91049 -10.84145 -10.70046 -10.54866 -10.49670 -10.34175 -9.96059 -9.81430 -9.12749 -8.49533 -8.40421 -8.20595 -7.18124 -6.00817 -4.01954 1.56199 1.68725 2.47610 3.31333 3.38809 3.43572 4.00613 4.44545 4.75645 4.84326 4.97186 5.16232 5.23114 5.35085 5.35679 5.48053 5.54561 5.68747 5.76461 5.83573 5.84587 5.90946 6.00205 6.02630 6.10076 6.17673 6.27448 6.41535 6.49762 6.56296 6.61960 6.74159 6.88996 7.16869 7.31275 7.47030 7.82355 8.16781 8.42794 8.65245 9.07731 9.62773 11.10320 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014787 B = 0.006273 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.136393 B = 4462.771156 C = 5275.287791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.061 0.939 9 C 0.194 3.806 10 N -0.676 5.676 11 C 0.090 3.910 12 H 0.076 0.924 13 C -0.151 4.151 14 C -0.122 4.122 15 C -0.116 4.116 16 C -0.059 4.059 17 H 0.085 0.915 18 C -0.013 4.013 19 C -0.075 4.075 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.114 4.114 23 C -0.035 4.035 24 Cl -0.083 7.083 25 H 0.260 0.740 26 H 0.025 0.975 27 H -0.015 1.015 28 H 0.328 0.672 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.494 -14.468 -0.449 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.547 4.547 8 H 0.079 0.921 9 C 0.068 3.932 10 N -0.307 5.307 11 C -0.022 4.022 12 H 0.095 0.905 13 C -0.190 4.190 14 C -0.160 4.160 15 C -0.153 4.153 16 C -0.078 4.078 17 H 0.103 0.897 18 C -0.014 4.014 19 C -0.094 4.094 20 C -0.132 4.132 21 C -0.139 4.139 22 C -0.133 4.133 23 C -0.061 4.061 24 Cl -0.055 7.055 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.003 0.997 28 H 0.147 0.853 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.329 -14.369 -1.251 16.656 hybrid contribution -0.174 1.115 0.704 1.331 sum 8.155 -13.254 -0.547 15.571 Atomic orbital electron populations 1.69969 1.06040 1.26536 1.51242 1.24971 0.94828 0.99259 0.95506 0.86485 0.80111 0.83619 0.77459 1.19695 1.21057 1.21167 1.21209 0.93451 0.90272 1.49800 0.92064 1.19565 0.90635 0.87480 0.95566 1.61080 1.20297 1.00770 1.48549 1.22124 0.95823 0.90650 0.93559 0.90531 1.23151 1.01813 0.95431 0.98624 1.22430 0.98001 0.96533 0.98998 1.22473 0.98547 0.98117 0.96196 1.21089 0.92716 0.95326 0.98680 0.89657 1.19274 0.94804 0.96413 0.90948 1.20740 0.93099 0.96323 0.99194 1.21116 0.96597 0.99303 0.96232 1.20905 0.99781 1.00036 0.93173 1.20846 0.93400 0.99189 0.99881 1.20698 0.93448 1.02154 0.89814 1.98319 1.69799 1.79461 1.57892 0.93068 0.95650 0.99676 0.85252 0.91767 0.91700 0.91673 0.91972 0.91883 0.91427 0.85941 0.86103 0.86019 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.51 -14.37 9.32 -34.44 -0.32 -14.69 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.19 5.03 5.27 -4.97 -0.03 5.01 16 10 N -0.68 -13.93 4.21 -106.81 -0.45 -14.38 16 11 C 0.09 1.55 3.13 -66.60 -0.21 1.34 16 12 H 0.08 1.45 7.81 -51.93 -0.41 1.04 16 13 C -0.15 -2.25 6.45 -25.07 -0.16 -2.41 16 14 C -0.12 -1.45 6.91 -24.74 -0.17 -1.62 16 15 C -0.12 -1.41 6.27 -25.07 -0.16 -1.57 16 16 C -0.06 -0.87 3.02 -90.66 -0.27 -1.15 16 17 H 0.09 1.28 6.22 -51.93 -0.32 0.96 16 18 C -0.01 -0.21 4.20 -104.59 -0.44 -0.65 16 19 C -0.08 -1.12 6.60 -39.59 -0.26 -1.38 16 20 C -0.11 -1.59 10.05 -39.58 -0.40 -1.98 16 21 C -0.12 -1.62 10.05 -39.59 -0.40 -2.02 16 22 C -0.11 -1.63 9.83 -39.55 -0.39 -2.02 16 23 C -0.03 -0.54 6.31 -39.50 -0.25 -0.79 16 24 Cl -0.08 -1.22 27.02 -51.86 -1.40 -2.62 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 27 H -0.01 -0.40 8.14 -51.93 -0.42 -0.82 16 28 H 0.33 6.44 5.61 -39.29 -0.22 6.22 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.97 7.56 -51.93 -0.39 0.58 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.66 8.14 -51.94 -0.42 0.24 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.80 6.96 -51.93 -0.36 0.44 16 35 H 0.12 1.72 6.57 -52.48 -0.34 1.37 16 36 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 318.04 15.07 4.79 4.79 Total: -1.00 -30.07 318.04 -10.29 -40.35 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.39 Total: 3.69 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -3.55 Total: -22.43 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.29 Total: -40.66 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.40 Total: -2.62 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.07 -10.29 -40.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426004228.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.211 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds