Wall clock time and date at job start Wed Apr 15 2020 11:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00115 * 2 1 4 4 H 1.48492 * 109.47523 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47124 * 300.00433 * 3 2 1 6 6 H 1.48503 * 109.46977 * 60.00362 * 3 2 1 7 7 C 1.37877 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00830 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99662 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47152 * 180.02562 * 9 7 2 11 11 C 1.46902 * 111.00149 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.05134 * 33.57783 * 11 10 9 13 13 C 1.54268 * 110.02977 * 272.16846 * 11 10 9 14 14 C 1.54894 * 104.19421 * 217.10526 * 13 11 10 15 15 C 1.54890 * 102.74882 * 37.93754 * 14 13 11 16 16 C 1.53864 * 110.03216 * 155.00083 * 11 10 9 17 17 H 1.09001 * 110.07165 * 238.58914 * 16 11 10 18 18 C 1.50702 * 110.03518 * 359.97438 * 16 11 10 19 19 C 1.38237 * 120.00143 * 58.64711 * 18 16 11 20 20 C 1.38221 * 120.01233 * 179.97438 * 19 18 16 21 21 C 1.38263 * 120.02714 * 359.97438 * 20 19 18 22 22 C 1.38195 * 120.01003 * 359.97438 * 21 20 19 23 23 C 1.38326 * 120.01026 * 238.62311 * 18 16 11 24 24 Cl 1.73600 * 120.01508 * 0.02562 * 23 18 16 25 25 H 0.97001 * 120.00426 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47213 * 59.99785 * 9 7 2 27 27 H 1.09004 * 109.47065 * 299.99583 * 9 7 2 28 28 H 1.00901 * 110.99932 * 56.04570 * 10 9 7 29 29 H 1.08994 * 110.48912 * 98.42839 * 13 11 10 30 30 H 1.09002 * 110.59911 * 335.83392 * 13 11 10 31 31 H 1.09006 * 110.75022 * 279.62786 * 14 13 11 32 32 H 1.08989 * 110.91862 * 156.33080 * 14 13 11 33 33 H 1.08997 * 110.48609 * 203.38232 * 15 14 13 34 34 H 1.09001 * 110.59615 * 80.79273 * 15 14 13 35 35 H 1.08003 * 119.99789 * 359.97438 * 19 18 16 36 36 H 1.08002 * 119.98422 * 180.02562 * 20 19 18 37 37 H 1.07999 * 119.99487 * 180.27557 * 21 20 19 38 38 H 1.07996 * 120.00042 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9071 0.0001 12 1 0.5772 -4.8291 -0.5659 13 6 1.2059 -5.3450 1.4486 14 6 1.4051 -6.8810 1.4300 15 6 2.6218 -7.0564 0.4877 16 6 2.4057 -5.9951 -0.6108 17 1 1.9151 -6.4455 -1.4737 18 6 3.7279 -5.4003 -1.0220 19 6 4.5262 -4.7744 -0.0828 20 6 5.7392 -4.2293 -0.4596 21 6 6.1552 -4.3101 -1.7757 22 6 5.3584 -4.9366 -2.7151 23 6 4.1433 -5.4810 -2.3389 24 17 3.1413 -6.2669 -3.5189 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8902 27 1 0.6248 -2.5571 0.8898 28 1 2.8406 -3.5486 0.7808 29 1 0.1792 -5.0968 1.7177 30 1 1.9047 -4.8782 2.1427 31 1 0.5257 -7.3796 1.0222 32 1 1.6320 -7.2561 2.4278 33 1 2.6284 -8.0570 0.0555 34 1 3.5520 -6.8670 1.0233 35 1 4.2021 -4.7113 0.9455 36 1 6.3627 -3.7408 0.2746 37 1 7.1051 -3.8880 -2.0686 38 1 5.6837 -5.0000 -3.7430 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426004228.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:51 Heat of formation + Delta-G solvation = -5.622635 kcal Electronic energy + Delta-G solvation = -19904.986893 eV Core-core repulsion = 16964.689327 eV Total energy + Delta-G solvation = -2940.297566 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.02088 -38.76993 -37.25018 -35.87099 -33.96483 -32.65793 -31.47365 -29.44254 -28.44278 -26.84442 -24.14051 -23.13620 -23.07743 -21.57420 -20.45259 -18.50835 -17.83509 -17.12811 -16.70938 -16.46616 -15.83394 -15.54530 -15.14243 -14.75497 -14.55321 -14.39981 -14.27040 -14.05680 -13.40041 -13.24557 -12.94879 -12.83357 -12.48827 -12.42213 -12.26116 -12.16370 -12.06043 -11.92575 -11.78563 -11.67845 -11.44496 -11.21760 -11.11554 -10.65887 -9.56307 -9.33466 -8.91544 -8.20909 -6.31061 0.44287 0.58320 1.33661 1.39155 1.40450 1.53686 2.39816 2.89644 3.12563 3.48426 3.70301 3.81706 3.99373 4.10066 4.23748 4.30018 4.46832 4.55068 4.57356 4.68692 4.69063 4.74577 4.86144 4.95348 5.03050 5.10679 5.13357 5.23551 5.24774 5.30045 5.37482 5.45374 5.48709 5.64689 5.65490 5.75888 6.06238 6.10766 6.52002 6.79066 6.95335 7.39819 8.90770 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014787 B = 0.006273 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.136393 B = 4462.771156 C = 5275.287791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.063 0.937 9 C 0.213 3.787 10 N -0.669 5.669 11 C 0.084 3.916 12 H 0.049 0.951 13 C -0.148 4.148 14 C -0.110 4.110 15 C -0.108 4.108 16 C -0.053 4.053 17 H 0.080 0.920 18 C -0.031 4.031 19 C -0.088 4.088 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.055 4.055 24 Cl -0.084 7.084 25 H 0.263 0.737 26 H -0.012 1.012 27 H -0.040 1.040 28 H 0.335 0.665 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.127 0.873 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.583 -14.762 0.071 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.082 0.918 9 C 0.085 3.915 10 N -0.300 5.300 11 C -0.027 4.027 12 H 0.068 0.932 13 C -0.187 4.187 14 C -0.148 4.148 15 C -0.145 4.145 16 C -0.072 4.072 17 H 0.099 0.901 18 C -0.032 4.032 19 C -0.107 4.107 20 C -0.138 4.138 21 C -0.140 4.140 22 C -0.141 4.141 23 C -0.082 4.082 24 Cl -0.056 7.056 25 H 0.072 0.928 26 H 0.006 0.994 27 H -0.022 1.022 28 H 0.156 0.844 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.168 0.832 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.431 -14.694 -0.727 18.035 hybrid contribution -0.830 1.176 0.506 1.526 sum 9.601 -13.518 -0.221 16.582 Atomic orbital electron populations 1.70102 1.07804 1.27705 1.52016 1.25919 0.95706 1.03260 0.94871 0.85353 0.79130 0.78641 0.77605 1.18461 1.20790 1.20286 1.21542 0.93674 0.91359 1.49747 0.91831 1.19144 0.90636 0.89193 0.92526 1.60969 1.19344 1.00672 1.49037 1.22196 0.95231 0.89947 0.95278 0.93219 1.23059 1.01001 0.98099 0.96576 1.22395 0.98297 0.93762 1.00364 1.22451 0.98887 0.97944 0.95222 1.21002 0.91994 0.94920 0.99288 0.90150 1.19414 0.95160 0.97238 0.91371 1.20896 0.93714 0.96711 0.99348 1.21460 0.96448 0.98829 0.97098 1.21284 1.00649 0.99224 0.92811 1.21154 0.93067 0.98879 1.01040 1.20950 0.94237 1.02985 0.89984 1.98311 1.69923 1.79498 1.57825 0.92818 0.99402 1.02237 0.84401 0.93045 0.91654 0.90935 0.89664 0.90091 0.90629 0.85514 0.83958 0.83231 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.41 13.29 21.45 0.28 -57.12 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.52 -30.06 9.32 25.60 0.24 -29.82 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.21 11.50 5.27 85.56 0.45 11.95 16 10 N -0.67 -28.18 4.21 -491.82 -2.07 -30.25 16 11 C 0.08 2.98 3.13 45.64 0.14 3.12 16 12 H 0.05 1.99 7.81 -2.39 -0.02 1.98 16 13 C -0.15 -4.39 6.45 31.67 0.20 -4.19 16 14 C -0.11 -2.41 6.91 31.89 0.22 -2.19 16 15 C -0.11 -2.39 6.27 31.67 0.20 -2.19 16 16 C -0.05 -1.55 3.02 -10.82 -0.03 -1.58 16 17 H 0.08 2.41 6.22 -2.39 -0.01 2.40 16 18 C -0.03 -0.93 4.20 -19.84 -0.08 -1.02 16 19 C -0.09 -2.51 6.60 22.27 0.15 -2.37 16 20 C -0.12 -3.08 10.05 22.27 0.22 -2.86 16 21 C -0.12 -2.98 10.05 22.27 0.22 -2.76 16 22 C -0.12 -3.30 9.83 22.29 0.22 -3.08 16 23 C -0.06 -1.67 6.31 22.32 0.14 -1.53 16 24 Cl -0.08 -2.44 27.02 -2.72 -0.07 -2.51 16 25 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 26 H -0.01 -0.74 8.07 -2.39 -0.02 -0.76 16 27 H -0.04 -2.32 8.14 -2.38 -0.02 -2.34 16 28 H 0.34 13.24 5.61 -89.69 -0.50 12.73 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 1.93 7.56 -2.39 -0.02 1.91 16 31 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.59 6.96 -2.39 -0.02 1.57 16 35 H 0.13 3.39 6.57 -2.91 -0.02 3.37 16 36 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 37 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 38 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -65.52 318.04 3.47 -62.05 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.55 Total: 19.07 kcal Atomic # 6 Polarization: -40.80 SS G_CDS: 2.76 Total: -38.04 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -1.79 Total: -87.38 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -0.07 Total: -2.51 kcal Total: -65.52 3.47 -62.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426004228.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.426 kcal (2) G-P(sol) polarization free energy of solvation -65.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds