Wall clock time and date at job start Wed Apr 15 2020 11:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47182 * 179.72677 * 9 7 2 11 11 C 1.46901 * 110.99816 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.43622 * 327.53994 * 11 10 9 13 13 C 1.54271 * 110.48493 * 90.22536 * 11 10 9 14 14 C 1.53877 * 106.59849 * 142.28909 * 13 11 10 15 15 C 1.54261 * 106.59854 * 359.97438 * 14 13 11 16 16 H 1.09009 * 110.48019 * 95.07136 * 15 14 13 17 17 C 1.50701 * 110.60103 * 217.65599 * 15 14 13 18 18 C 1.38234 * 119.98297 * 54.57397 * 17 15 14 19 19 C 1.38221 * 120.00931 * 179.72550 * 18 17 15 20 20 C 1.38356 * 119.98654 * 0.54603 * 19 18 17 21 21 Cl 1.73595 * 120.01361 * 179.70210 * 20 19 18 22 22 C 1.38354 * 119.97049 * 359.72739 * 20 19 18 23 23 C 1.38212 * 119.99103 * 359.97438 * 22 20 19 24 24 C 1.54885 * 110.48925 * 204.99732 * 11 10 9 25 25 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 27 27 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 28 28 H 1.00899 * 111.00252 * 303.95531 * 10 9 7 29 29 H 1.08998 * 110.03166 * 261.57125 * 13 11 10 30 30 H 1.09004 * 110.03187 * 23.00444 * 13 11 10 31 31 H 1.09001 * 110.02758 * 240.71799 * 14 13 11 32 32 H 1.08998 * 110.03145 * 119.28760 * 14 13 11 33 33 H 1.07999 * 119.99600 * 359.97438 * 18 17 15 34 34 H 1.07998 * 120.00773 * 180.26849 * 19 18 17 35 35 H 1.08004 * 120.00465 * 179.97438 * 22 20 19 36 36 H 1.07998 * 119.99758 * 180.02562 * 23 22 20 37 37 H 1.09006 * 110.75662 * 321.70088 * 24 11 10 38 38 H 1.09002 * 110.75842 * 84.88075 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0078 11 6 1.5052 -4.9070 -0.0073 12 1 0.5689 -4.8320 0.5456 13 6 1.2458 -5.3810 -1.4524 14 6 1.4443 -6.9069 -1.4568 15 6 1.8181 -7.3068 -0.0146 16 1 0.9313 -7.6210 0.5361 17 6 2.8507 -8.4045 -0.0194 18 6 4.0338 -8.2369 -0.7145 19 6 4.9836 -9.2410 -0.7146 20 6 4.7453 -10.4185 -0.0283 21 17 5.9345 -11.6831 -0.0344 22 6 3.5585 -10.5877 0.6625 23 6 2.6121 -9.5805 0.6670 24 6 2.4056 -6.0119 0.5988 25 1 -0.4851 0.8401 0.0004 26 1 0.6283 -2.5592 0.8921 27 1 0.6202 -2.5546 -0.8878 28 1 2.8369 -3.5466 -0.7918 29 1 0.2256 -5.1364 -1.7480 30 1 1.9553 -4.9101 -2.1328 31 1 2.2503 -7.1765 -2.1394 32 1 0.5205 -7.4027 -1.7547 33 1 4.2177 -7.3197 -1.2542 34 1 5.9098 -9.1083 -1.2541 35 1 3.3717 -11.5068 1.1981 36 1 1.6858 -9.7124 1.2065 37 1 3.4429 -5.8760 0.2928 38 1 2.3236 -6.0240 1.6857 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449290603.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:00 Heat of formation + Delta-G solvation = -4.462896 kcal Electronic energy + Delta-G solvation = -18611.641234 eV Core-core repulsion = 15671.393958 eV Total energy + Delta-G solvation = -2940.247276 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.98211 -37.97362 -36.59549 -34.31525 -32.38390 -31.28587 -30.75685 -28.32821 -27.23828 -25.08830 -23.20234 -22.30297 -21.63400 -19.95928 -19.65345 -17.38427 -16.41454 -16.07002 -15.47633 -15.14502 -14.53111 -14.52131 -13.77982 -13.69192 -13.50199 -13.35552 -13.08966 -12.64771 -12.17522 -12.09689 -11.82389 -11.49812 -11.38881 -11.07043 -11.06048 -10.93828 -10.84828 -10.65491 -10.60241 -10.43773 -10.22087 -9.85644 -9.22328 -9.18364 -8.64775 -8.48601 -7.25217 -6.03590 -4.05661 0.95989 1.10386 1.92845 3.33125 3.37036 3.40110 3.42741 4.42029 4.50414 4.58752 4.68532 4.84259 4.89417 5.15194 5.17311 5.22144 5.32302 5.46369 5.53299 5.60968 5.74672 5.76222 5.79968 5.82787 6.00558 6.03252 6.08220 6.13305 6.22426 6.35465 6.51411 6.53730 6.62487 6.66351 7.26646 7.43651 7.78698 8.13495 8.40261 8.62516 9.03701 9.59358 11.07399 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037171 B = 0.002796 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.097171 B =10010.593586 C =10425.424750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.061 0.939 9 C 0.195 3.805 10 N -0.683 5.683 11 C 0.084 3.916 12 H 0.075 0.925 13 C -0.153 4.153 14 C -0.111 4.111 15 C -0.061 4.061 16 H 0.082 0.918 17 C -0.056 4.056 18 C -0.101 4.101 19 C -0.108 4.108 20 C -0.044 4.044 21 Cl -0.080 7.080 22 C -0.110 4.110 23 C -0.108 4.108 24 C -0.100 4.100 25 H 0.262 0.738 26 H 0.026 0.974 27 H -0.013 1.013 28 H 0.329 0.671 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.071 0.929 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.148 -22.129 -1.460 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.079 0.921 9 C 0.068 3.932 10 N -0.312 5.312 11 C -0.027 4.027 12 H 0.094 0.906 13 C -0.192 4.192 14 C -0.149 4.149 15 C -0.080 4.080 16 H 0.101 0.899 17 C -0.056 4.056 18 C -0.120 4.120 19 C -0.127 4.127 20 C -0.071 4.071 21 Cl -0.051 7.051 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.138 4.138 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.004 0.996 28 H 0.147 0.853 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.090 0.910 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.178 -22.073 -0.768 22.934 hybrid contribution 0.127 0.752 -0.932 1.204 sum 6.305 -21.321 -1.701 22.298 Atomic orbital electron populations 1.69952 1.06078 1.26887 1.50871 1.24987 0.94874 0.99353 0.95347 0.86550 0.79435 0.82697 0.78657 1.20277 1.21349 1.20144 1.21168 0.93475 0.90356 1.50414 0.92068 1.19560 0.90584 0.87347 0.95689 1.60661 1.20943 1.01011 1.48602 1.22390 0.96516 0.90543 0.93286 0.90644 1.22937 1.01928 0.94902 0.99437 1.22186 1.01128 0.96320 0.95280 1.21081 0.96046 0.93306 0.97518 0.89921 1.20046 0.95264 0.94816 0.95466 1.21052 0.92913 0.98846 0.99146 1.21054 1.00217 0.92073 0.99327 1.20905 0.92047 0.91151 1.02969 1.98361 1.57247 1.51799 1.97704 1.21012 0.92426 1.00022 0.99386 1.21068 0.99277 0.92732 0.99576 1.22578 0.99765 0.91547 0.99948 0.92867 0.95559 0.99556 0.85336 0.92005 0.91724 0.91765 0.92063 0.84776 0.85085 0.85199 0.85142 0.91024 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.56 9.32 -34.44 -0.32 -14.88 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.19 5.04 5.30 -4.98 -0.03 5.02 16 10 N -0.68 -14.22 6.35 -106.24 -0.67 -14.90 16 11 C 0.08 1.41 3.19 -66.05 -0.21 1.20 16 12 H 0.08 1.35 7.82 -51.93 -0.41 0.95 16 13 C -0.15 -2.21 6.50 -25.61 -0.17 -2.38 16 14 C -0.11 -1.28 6.26 -25.61 -0.16 -1.45 16 15 C -0.06 -0.68 3.07 -90.13 -0.28 -0.96 16 16 H 0.08 0.87 7.94 -51.92 -0.41 0.46 16 17 C -0.06 -0.59 4.92 -104.62 -0.51 -1.10 16 18 C -0.10 -1.06 8.13 -39.59 -0.32 -1.38 16 19 C -0.11 -1.08 9.83 -39.54 -0.39 -1.46 16 20 C -0.04 -0.45 6.32 -39.50 -0.25 -0.69 16 21 Cl -0.08 -0.75 28.96 -51.86 -1.50 -2.26 16 22 C -0.11 -1.03 9.83 -39.55 -0.39 -1.42 16 23 C -0.11 -1.04 9.68 -39.59 -0.38 -1.42 16 24 C -0.10 -1.38 5.95 -24.75 -0.15 -1.52 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 26 H 0.03 0.74 8.08 -51.93 -0.42 0.32 16 27 H -0.01 -0.37 8.14 -51.93 -0.42 -0.79 16 28 H 0.33 6.56 8.06 -39.29 -0.32 6.24 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.96 7.52 -51.93 -0.39 0.57 16 31 H 0.06 0.70 6.71 -51.93 -0.35 0.35 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.13 1.32 7.29 -52.49 -0.38 0.94 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.13 1.02 7.97 -52.49 -0.42 0.60 16 37 H 0.07 1.00 7.18 -51.93 -0.37 0.62 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 326.57 15.07 4.92 4.92 Total: -1.00 -29.53 326.57 -10.74 -40.27 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.55 Total: 2.36 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -3.65 Total: -20.97 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.06 Total: -40.97 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.53 -10.74 -40.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449290603.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.811 kcal (2) G-P(sol) polarization free energy of solvation -29.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds