Wall clock time and date at job start Wed Apr 15 2020 11:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47182 * 179.72677 * 9 7 2 11 11 C 1.46901 * 110.99816 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.43622 * 327.53994 * 11 10 9 13 13 C 1.54271 * 110.48493 * 90.22536 * 11 10 9 14 14 C 1.53877 * 106.59849 * 142.28909 * 13 11 10 15 15 C 1.54261 * 106.59854 * 359.97438 * 14 13 11 16 16 H 1.09009 * 110.48019 * 95.07136 * 15 14 13 17 17 C 1.50701 * 110.60103 * 217.65599 * 15 14 13 18 18 C 1.38234 * 119.98297 * 54.57397 * 17 15 14 19 19 C 1.38221 * 120.00931 * 179.72550 * 18 17 15 20 20 C 1.38356 * 119.98654 * 0.54603 * 19 18 17 21 21 Cl 1.73595 * 120.01361 * 179.70210 * 20 19 18 22 22 C 1.38354 * 119.97049 * 359.72739 * 20 19 18 23 23 C 1.38212 * 119.99103 * 359.97438 * 22 20 19 24 24 C 1.54885 * 110.48925 * 204.99732 * 11 10 9 25 25 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 27 27 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 28 28 H 1.00899 * 111.00252 * 303.95531 * 10 9 7 29 29 H 1.08998 * 110.03166 * 261.57125 * 13 11 10 30 30 H 1.09004 * 110.03187 * 23.00444 * 13 11 10 31 31 H 1.09001 * 110.02758 * 240.71799 * 14 13 11 32 32 H 1.08998 * 110.03145 * 119.28760 * 14 13 11 33 33 H 1.07999 * 119.99600 * 359.97438 * 18 17 15 34 34 H 1.07998 * 120.00773 * 180.26849 * 19 18 17 35 35 H 1.08004 * 120.00465 * 179.97438 * 22 20 19 36 36 H 1.07998 * 119.99758 * 180.02562 * 23 22 20 37 37 H 1.09006 * 110.75662 * 321.70088 * 24 11 10 38 38 H 1.09002 * 110.75842 * 84.88075 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0078 11 6 1.5052 -4.9070 -0.0073 12 1 0.5689 -4.8320 0.5456 13 6 1.2458 -5.3810 -1.4524 14 6 1.4443 -6.9069 -1.4568 15 6 1.8181 -7.3068 -0.0146 16 1 0.9313 -7.6210 0.5361 17 6 2.8507 -8.4045 -0.0194 18 6 4.0338 -8.2369 -0.7145 19 6 4.9836 -9.2410 -0.7146 20 6 4.7453 -10.4185 -0.0283 21 17 5.9345 -11.6831 -0.0344 22 6 3.5585 -10.5877 0.6625 23 6 2.6121 -9.5805 0.6670 24 6 2.4056 -6.0119 0.5988 25 1 -0.4851 0.8401 0.0004 26 1 0.6283 -2.5592 0.8921 27 1 0.6202 -2.5546 -0.8878 28 1 2.8369 -3.5466 -0.7918 29 1 0.2256 -5.1364 -1.7480 30 1 1.9553 -4.9101 -2.1328 31 1 2.2503 -7.1765 -2.1394 32 1 0.5205 -7.4027 -1.7547 33 1 4.2177 -7.3197 -1.2542 34 1 5.9098 -9.1083 -1.2541 35 1 3.3717 -11.5068 1.1981 36 1 1.6858 -9.7124 1.2065 37 1 3.4429 -5.8760 0.2928 38 1 2.3236 -6.0240 1.6857 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449290603.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:00 Heat of formation + Delta-G solvation = -20.156355 kcal Electronic energy + Delta-G solvation = -18612.321754 eV Core-core repulsion = 15671.393958 eV Total energy + Delta-G solvation = -2940.927795 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.84547 -39.07464 -37.40060 -35.97701 -34.23752 -32.05469 -31.85643 -29.63610 -28.67074 -26.68039 -23.97281 -23.69254 -23.09886 -21.29340 -20.60830 -18.53635 -18.11795 -17.12195 -16.67214 -16.48682 -15.98948 -15.54871 -15.10774 -14.66557 -14.52376 -14.42310 -14.34279 -14.20853 -13.57901 -13.33758 -13.10749 -12.82383 -12.70753 -12.54324 -12.40447 -12.20443 -11.91538 -11.88940 -11.83873 -11.73808 -11.56461 -11.35608 -11.15298 -10.65598 -9.95159 -9.45287 -9.00106 -8.22152 -6.33509 0.18955 0.37638 1.19200 1.41099 1.44644 1.52601 2.40161 2.66147 3.10930 3.51958 3.63613 3.72630 3.93438 4.00364 4.13576 4.15778 4.41060 4.43731 4.56817 4.61503 4.63634 4.72633 4.80094 4.82632 4.97044 5.07230 5.11069 5.12975 5.26630 5.29189 5.31251 5.34052 5.38787 5.43438 5.63846 5.71352 5.88720 6.04557 6.50037 6.76588 6.92645 7.37727 8.89065 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037171 B = 0.002796 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.097171 B =10010.593586 C =10425.424750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.538 4.538 8 H 0.064 0.936 9 C 0.212 3.788 10 N -0.683 5.683 11 C 0.076 3.924 12 H 0.057 0.943 13 C -0.148 4.148 14 C -0.102 4.102 15 C -0.048 4.048 16 H 0.094 0.906 17 C -0.066 4.066 18 C -0.109 4.109 19 C -0.115 4.115 20 C -0.053 4.053 21 Cl -0.077 7.077 22 C -0.112 4.112 23 C -0.108 4.108 24 C -0.091 4.091 25 H 0.265 0.735 26 H -0.005 1.005 27 H -0.039 1.039 28 H 0.335 0.665 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.071 0.929 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.227 -23.129 -1.570 24.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.576 4.576 8 H 0.082 0.918 9 C 0.084 3.916 10 N -0.313 5.313 11 C -0.035 4.035 12 H 0.075 0.925 13 C -0.187 4.187 14 C -0.140 4.140 15 C -0.067 4.067 16 H 0.112 0.888 17 C -0.066 4.066 18 C -0.127 4.127 19 C -0.133 4.133 20 C -0.079 4.079 21 Cl -0.049 7.049 22 C -0.131 4.131 23 C -0.126 4.126 24 C -0.129 4.129 25 H 0.074 0.926 26 H 0.014 0.986 27 H -0.021 1.021 28 H 0.153 0.847 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.154 0.846 34 H 0.160 0.840 35 H 0.165 0.835 36 H 0.167 0.833 37 H 0.090 0.910 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.270 -23.105 -0.883 24.238 hybrid contribution -0.212 0.993 -0.884 1.346 sum 7.058 -22.111 -1.767 23.278 Atomic orbital electron populations 1.70085 1.07805 1.28044 1.51528 1.25955 0.95786 1.03390 0.94602 0.85397 0.78125 0.77674 0.79175 1.19033 1.20808 1.19363 1.21556 0.93816 0.91595 1.50614 0.91795 1.19165 0.90589 0.88892 0.92951 1.60563 1.20284 1.01399 1.49037 1.22509 0.96311 0.89528 0.95129 0.92451 1.22825 1.01075 0.97372 0.97428 1.22128 1.02312 0.93638 0.95919 1.20951 0.96564 0.92229 0.96973 0.88787 1.19986 0.95153 0.95011 0.96438 1.21141 0.93082 0.99116 0.99336 1.21207 1.00627 0.92009 0.99465 1.21087 0.92446 0.91314 1.03101 1.98362 1.57180 1.51617 1.97693 1.21248 0.92042 1.00671 0.99133 1.21292 1.00014 0.92207 0.99093 1.22461 0.99126 0.91640 0.99669 0.92628 0.98648 1.02093 0.84695 0.93165 0.92139 0.90637 0.90666 0.84581 0.84049 0.83507 0.83277 0.90989 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.54 -30.87 9.32 25.60 0.24 -30.63 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.21 11.41 5.30 85.56 0.45 11.86 16 10 N -0.68 -29.12 6.35 -490.04 -3.11 -32.23 16 11 C 0.08 2.58 3.19 45.99 0.15 2.72 16 12 H 0.06 2.14 7.82 -2.39 -0.02 2.12 16 13 C -0.15 -4.27 6.50 31.32 0.20 -4.06 16 14 C -0.10 -2.18 6.26 31.32 0.20 -1.98 16 15 C -0.05 -1.00 3.07 -10.48 -0.03 -1.03 16 16 H 0.09 1.76 7.94 -2.38 -0.02 1.74 16 17 C -0.07 -1.25 4.92 -19.86 -0.10 -1.34 16 18 C -0.11 -2.06 8.13 22.26 0.18 -1.88 16 19 C -0.11 -2.08 9.83 22.29 0.22 -1.86 16 20 C -0.05 -0.96 6.32 22.33 0.14 -0.82 16 21 Cl -0.08 -1.33 28.96 -2.72 -0.08 -1.41 16 22 C -0.11 -1.84 9.83 22.29 0.22 -1.62 16 23 C -0.11 -1.79 9.68 22.27 0.22 -1.57 16 24 C -0.09 -2.43 5.95 31.87 0.19 -2.24 16 25 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 26 H 0.00 -0.27 8.08 -2.39 -0.02 -0.29 16 27 H -0.04 -2.23 8.14 -2.39 -0.02 -2.25 16 28 H 0.34 13.52 8.06 -89.69 -0.72 12.80 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 1.79 7.52 -2.39 -0.02 1.77 16 31 H 0.07 1.48 6.71 -2.39 -0.02 1.46 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.14 2.46 7.29 -2.91 -0.02 2.44 16 34 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 36 H 0.15 1.85 7.97 -2.91 -0.02 1.83 16 37 H 0.07 1.93 7.18 -2.38 -0.02 1.91 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -63.73 326.57 2.19 -61.54 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.33 Total: 16.15 kcal Atomic # 6 Polarization: -36.69 SS G_CDS: 2.74 Total: -33.95 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -2.82 Total: -88.74 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -63.73 2.19 -61.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449290603.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.388 kcal (2) G-P(sol) polarization free energy of solvation -63.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds