Wall clock time and date at job start Wed Apr 15 2020 11:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39797 * 120.04117 * 195.19568 * 3 2 1 5 5 C 1.37746 * 120.05933 * 180.25360 * 4 3 2 6 6 C 1.39037 * 120.15057 * 359.45485 * 5 4 3 7 7 N 1.39337 * 119.95494 * 180.27250 * 6 5 4 8 8 C 1.38748 * 119.99839 * 255.75225 * 7 6 5 9 9 C 1.39621 * 119.84837 * 6.23941 * 8 7 6 10 10 C 1.36304 * 120.15825 * 179.71708 * 9 8 7 11 11 C 1.40909 * 119.83845 * 0.57352 * 10 9 8 12 12 C 1.41086 * 120.15560 * 179.67999 * 11 10 9 13 13 H 1.08004 * 120.00632 * 204.10460 * 12 11 10 14 14 C 1.39837 * 119.99828 * 24.09823 * 12 11 10 15 15 N 1.30919 * 120.00253 * 18.26491 * 14 12 11 16 16 Si 1.86801 * 120.00293 * 198.26268 * 14 12 11 17 17 H 1.48500 * 109.47530 * 89.99793 * 16 14 12 18 18 H 1.48504 * 109.47479 * 210.00471 * 16 14 12 19 19 H 1.48506 * 109.46879 * 330.00057 * 16 14 12 20 20 C 1.40909 * 119.69632 * 359.70066 * 11 10 9 21 21 C 1.36297 * 119.84208 * 359.97438 * 20 11 10 22 22 C 1.39798 * 120.08578 * 0.29954 * 6 5 4 23 23 N 1.39917 * 120.02993 * 179.97438 * 22 6 5 24 24 C 1.38259 * 119.94330 * 359.97345 * 22 6 5 25 25 H 1.08004 * 119.97516 * 359.97438 * 4 3 2 26 26 H 1.08006 * 119.93006 * 179.73159 * 5 4 3 27 27 H 0.97000 * 120.00023 * 75.75237 * 7 6 5 28 28 H 1.08002 * 119.92140 * 359.97438 * 9 8 7 29 29 H 1.07995 * 120.08194 * 180.30478 * 10 9 8 30 30 H 0.97000 * 120.00325 * 179.97438 * 15 14 12 31 31 H 1.08000 * 120.08004 * 179.97438 * 20 11 10 32 32 H 1.08003 * 119.92485 * 180.02562 * 21 20 11 33 33 H 0.97002 * 119.99836 * 359.97438 * 23 22 6 34 34 H 0.97004 * 120.00490 * 179.97438 * 23 22 6 35 35 H 1.08002 * 120.07869 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2674 1.1688 0.3172 5 6 4.6448 1.1712 0.3122 6 6 5.3441 0.0100 0.0031 7 7 6.7375 0.0156 0.0048 8 6 7.4326 0.0323 -1.1959 9 6 6.7384 0.1752 -2.3988 10 6 7.4155 0.1982 -3.5816 11 6 8.8182 0.0653 -3.5892 12 6 9.5251 0.0815 -4.8101 13 1 10.4941 -0.3904 -4.8795 14 6 8.9711 0.7086 -5.9305 15 7 7.9981 1.5720 -5.7831 16 14 9.6194 0.3145 -7.6375 17 1 8.8554 -0.8248 -8.2063 18 1 9.4615 1.5031 -8.5136 19 1 11.0568 -0.0481 -7.5495 20 6 9.5118 -0.0842 -2.3717 21 6 8.8227 -0.0989 -1.1959 22 6 4.6511 -1.1630 -0.3101 23 7 5.3560 -2.3309 -0.6216 24 6 3.2685 -1.1682 -0.3117 25 1 2.7272 2.0715 0.5620 26 1 5.1830 2.0761 0.5534 27 1 7.2215 0.0077 0.8454 28 1 5.6627 0.2718 -2.3919 29 1 6.8777 0.3137 -4.5110 30 1 7.6140 2.0073 -6.5603 31 1 10.5869 -0.1870 -2.3704 32 1 9.3530 -0.2131 -0.2620 33 1 6.3260 -2.3267 -0.6207 34 1 4.8747 -3.1447 -0.8384 35 1 2.7309 -2.0731 -0.5537 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601399.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:39 Heat of formation + Delta-G solvation = 66.268931 kcal Electronic energy + Delta-G solvation = -19957.359941 eV Core-core repulsion = 16919.072334 eV Total energy + Delta-G solvation = -3038.287607 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -40.99352 -39.36871 -37.77614 -36.34366 -35.22262 -34.68759 -31.63686 -31.28470 -30.18646 -29.15257 -26.42979 -24.31139 -23.22478 -22.86265 -21.84446 -19.81201 -19.12847 -18.00109 -17.90934 -17.71186 -16.78527 -16.39713 -15.66461 -15.43002 -15.06148 -14.96221 -14.65752 -14.52403 -14.30857 -13.98823 -13.90621 -13.62769 -13.42143 -13.31488 -12.94424 -12.74930 -12.72207 -12.35300 -12.21581 -11.56277 -11.46144 -11.16074 -11.11795 -10.48058 -9.71353 -9.34618 -8.56856 -8.43800 -8.13645 -6.00871 -0.16269 0.67629 1.12434 1.24475 1.41546 1.53128 1.59541 1.63171 1.99546 2.27593 2.79367 2.84365 2.87528 3.03812 3.24989 3.88073 4.03087 4.31527 4.50907 4.53686 4.56303 4.60613 4.96063 5.00719 5.12089 5.23379 5.32316 5.43994 5.47226 5.52602 5.69423 5.80551 5.89572 6.01320 6.22772 6.42718 6.46379 6.58659 6.74466 6.94854 7.03221 7.10787 7.22705 7.31242 8.47532 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021765 B = 0.004154 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.155237 B = 6739.218282 C = 7382.848080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.286 3.714 3 C 0.000 4.000 4 C -0.115 4.115 5 C -0.087 4.087 6 C 0.106 3.894 7 N -0.695 5.695 8 C 0.106 3.894 9 C -0.148 4.148 10 C -0.150 4.150 11 C 0.044 3.956 12 C -0.504 4.504 13 H 0.068 0.932 14 C 0.034 3.966 15 N -0.838 5.838 16 Si 0.972 3.028 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.260 1.260 20 C -0.201 4.201 21 C -0.149 4.149 22 C 0.206 3.794 23 N -0.861 5.861 24 C -0.147 4.147 25 H 0.147 0.853 26 H 0.142 0.858 27 H 0.408 0.592 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.282 0.718 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.402 0.598 34 H 0.406 0.594 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.709 -4.092 10.785 12.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.029 4.029 3 C -0.005 4.005 4 C -0.138 4.138 5 C -0.108 4.108 6 C 0.007 3.993 7 N -0.327 5.327 8 C 0.009 3.991 9 C -0.169 4.169 10 C -0.170 4.170 11 C 0.042 3.958 12 C -0.535 4.535 13 H 0.086 0.914 14 C -0.178 4.178 15 N -0.465 5.465 16 Si 0.794 3.206 17 H -0.191 1.191 18 H -0.198 1.198 19 H -0.184 1.184 20 C -0.221 4.221 21 C -0.171 4.171 22 C 0.097 3.903 23 N -0.399 5.399 24 C -0.174 4.174 25 H 0.165 0.835 26 H 0.159 0.841 27 H 0.246 0.754 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.142 0.858 33 H 0.232 0.768 34 H 0.236 0.764 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.732 -3.925 10.584 13.143 hybrid contribution 1.076 -0.247 -0.916 1.435 sum -5.655 -4.172 9.668 11.952 Atomic orbital electron populations 1.81243 1.13211 1.09147 1.10715 1.25861 0.92689 0.92152 0.92165 1.15745 0.83033 0.95749 1.05943 1.20924 0.93453 0.97164 1.02249 1.21346 0.93665 0.97178 0.98562 1.17362 0.84134 0.92100 1.05741 1.40908 1.01506 1.85253 1.05079 1.17269 0.90502 1.05905 0.85412 1.20096 0.97605 1.07290 0.91942 1.20822 0.94372 1.05184 0.96625 1.17804 0.92321 0.92660 0.93049 1.19626 1.04789 1.33548 0.95557 0.91378 1.26561 0.94473 0.92328 1.04477 1.69925 1.23327 1.20077 1.33214 0.85358 0.79632 0.78616 0.77001 1.19084 1.19752 1.18400 1.20722 0.97990 1.10923 0.92460 1.20099 0.92106 1.07372 0.97479 1.18055 0.90839 0.87562 0.93841 1.42457 1.09595 1.09718 1.78158 1.20493 0.91479 0.98456 1.06943 0.83497 0.84054 0.75423 0.88812 0.88892 0.90813 0.88589 0.85834 0.76821 0.76449 0.83808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.09 18.54 19.01 0.35 -12.74 16 2 C 0.29 6.80 15.32 88.33 1.35 8.15 16 3 C 0.00 -0.01 5.74 -21.28 -0.12 -0.13 16 4 C -0.11 -2.27 9.74 22.53 0.22 -2.06 16 5 C -0.09 -1.92 9.94 22.35 0.22 -1.70 16 6 C 0.11 2.65 4.51 38.52 0.17 2.82 16 7 N -0.69 -18.63 4.71 -179.73 -0.85 -19.48 16 8 C 0.11 3.84 5.84 38.72 0.23 4.06 16 9 C -0.15 -6.31 9.11 22.15 0.20 -6.11 16 10 C -0.15 -7.64 8.64 22.47 0.19 -7.45 16 11 C 0.04 2.33 5.58 -21.27 -0.12 2.21 16 12 C -0.50 -27.22 9.03 23.36 0.21 -27.01 16 13 H 0.07 3.57 7.91 -2.91 -0.02 3.55 16 14 C 0.03 1.75 5.13 85.22 0.44 2.18 16 15 N -0.84 -44.70 10.94 21.81 0.24 -44.46 16 16 Si 0.97 39.14 29.60 68.60 2.03 41.17 16 17 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 18 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 19 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 20 C -0.20 -9.19 9.74 22.47 0.22 -8.97 16 21 C -0.15 -5.64 9.82 22.15 0.22 -5.43 16 22 C 0.21 4.79 6.28 38.23 0.24 5.03 16 23 N -0.86 -18.37 9.04 -51.07 -0.46 -18.83 16 24 C -0.15 -3.07 9.59 22.65 0.22 -2.85 16 25 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 26 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 27 H 0.41 9.02 8.82 -92.71 -0.82 8.21 16 28 H 0.09 3.86 6.75 -2.91 -0.02 3.84 16 29 H 0.09 5.14 6.13 -2.91 -0.02 5.12 16 30 H 0.28 13.77 8.30 -92.71 -0.77 13.00 16 31 H 0.10 4.20 8.06 -2.91 -0.02 4.17 16 32 H 0.12 3.80 8.06 -2.91 -0.02 3.77 16 33 H 0.40 9.64 7.49 -92.71 -0.69 8.94 16 34 H 0.41 6.69 8.84 -92.71 -0.82 5.87 16 35 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -60.63 312.70 4.05 -56.59 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -1.16 Total: 34.99 kcal Atomic # 6 Polarization: -41.13 SS G_CDS: 3.89 Total: -37.24 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -0.72 Total: -95.51 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -60.63 4.05 -56.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601399.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.857 kcal (2) G-P(sol) polarization free energy of solvation -60.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds