Wall clock time and date at job start Wed Apr 15 2020 11:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 119.99827 * 2 1 4 4 H 1.48508 * 109.47153 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47557 * 300.00248 * 3 2 1 6 6 H 1.48505 * 109.47283 * 60.00190 * 3 2 1 7 7 C 1.37875 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00261 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00212 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47540 * 180.02562 * 9 7 2 11 11 C 1.46839 * 111.00046 * 170.00058 * 10 9 7 12 12 C 1.53036 * 109.52203 * 185.84133 * 11 10 9 13 13 C 1.53127 * 109.27466 * 300.81557 * 12 11 10 14 14 C 1.50706 * 109.51986 * 177.56068 * 13 12 11 15 15 C 1.38263 * 119.99321 * 299.72435 * 14 13 12 16 16 C 1.38221 * 120.02196 * 179.77198 * 15 14 13 17 17 C 1.38236 * 120.01539 * 0.50468 * 16 15 14 18 18 C 1.38336 * 119.98557 * 359.75046 * 17 16 15 19 19 Cl 1.73602 * 120.01094 * 180.02562 * 18 17 16 20 20 C 1.38188 * 119.98978 * 120.00398 * 14 13 12 21 21 C 1.53112 * 109.15883 * 57.65891 * 13 12 11 22 22 C 1.46842 * 110.99638 * 294.20871 * 10 9 7 23 23 H 0.96995 * 120.00344 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46944 * 59.99584 * 9 7 2 25 25 H 1.09007 * 109.46725 * 300.00465 * 9 7 2 26 26 H 1.08997 * 109.46735 * 65.82375 * 11 10 9 27 27 H 1.09006 * 109.45445 * 305.84075 * 11 10 9 28 28 H 1.09000 * 109.50481 * 180.88297 * 12 11 10 29 29 H 1.08996 * 109.53928 * 60.77814 * 12 11 10 30 30 H 1.08999 * 109.52435 * 297.68667 * 13 12 11 31 31 H 1.07994 * 119.98890 * 0.02562 * 15 14 13 32 32 H 1.08000 * 119.99298 * 180.25923 * 16 15 14 33 33 H 1.08002 * 120.00731 * 179.76900 * 17 16 15 34 34 H 1.08000 * 120.01063 * 359.95538 * 20 14 13 35 35 H 1.08996 * 109.50678 * 62.28697 * 21 13 12 36 36 H 1.09005 * 109.50652 * 182.40544 * 21 13 12 37 37 H 1.09003 * 109.46411 * 294.17729 * 22 10 9 38 38 H 1.09004 * 109.46469 * 54.15907 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5215 -4.8930 0.2375 12 6 2.5580 -6.0104 0.3757 13 6 3.3918 -6.0878 -0.9064 14 6 4.4535 -7.1464 -0.7534 15 6 5.4002 -7.0362 0.2482 16 6 6.3713 -8.0092 0.3919 17 6 6.4029 -9.0877 -0.4722 18 6 5.4591 -9.1958 -1.4779 19 17 5.4977 -10.5502 -2.5630 20 6 4.4840 -8.2240 -1.6180 21 6 4.0548 -4.7307 -1.1573 22 6 2.9749 -3.6503 -1.2509 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 0.8603 -5.1126 -0.6007 27 1 0.9358 -4.8258 1.1544 28 1 2.0493 -6.9608 0.5367 29 1 3.2111 -5.7991 1.2223 30 1 2.7450 -6.3393 -1.7469 31 1 5.3784 -6.1918 0.9210 32 1 7.1081 -7.9248 1.1771 33 1 7.1640 -9.8460 -0.3621 34 1 3.7467 -8.3080 -2.4027 35 1 4.7314 -4.4986 -0.3349 36 1 4.6155 -4.7666 -2.0914 37 1 2.3068 -3.8757 -2.0822 38 1 3.4448 -2.6806 -1.4152 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057537430.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:48 Heat of formation + Delta-G solvation = 2.914374 kcal Electronic energy + Delta-G solvation = -19042.591075 eV Core-core repulsion = 16102.663702 eV Total energy + Delta-G solvation = -2939.927373 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.92644 -38.01514 -36.60024 -34.18044 -32.39273 -30.95602 -30.36608 -29.91841 -26.79947 -24.25935 -22.91585 -22.58174 -21.93686 -20.70167 -19.06670 -17.18462 -16.28958 -15.68439 -15.61504 -15.02770 -14.25730 -14.22763 -14.11067 -13.84082 -13.65883 -13.36719 -13.02601 -12.63232 -12.02979 -11.89811 -11.81055 -11.64928 -11.57464 -11.31358 -11.06866 -10.79667 -10.78127 -10.62926 -10.37375 -10.20743 -10.07332 -9.65949 -9.15229 -9.00130 -8.72162 -8.44303 -7.22031 -6.03229 -4.04512 1.03497 1.13890 1.95324 3.30387 3.37923 3.42519 3.49835 4.41954 4.53525 4.66613 4.89255 4.92897 5.09927 5.15955 5.23604 5.29973 5.32729 5.38457 5.66537 5.70168 5.79953 5.88222 5.98279 6.03396 6.12186 6.14821 6.22300 6.27676 6.36063 6.43643 6.55540 6.65813 6.74609 6.75741 7.31502 7.35843 7.80733 8.10332 8.21916 8.56171 9.03735 9.59908 11.07748 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037929 B = 0.003193 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.052820 B = 8766.228117 C = 8947.994459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.192 3.808 10 N -0.536 5.536 11 C 0.055 3.945 12 C -0.103 4.103 13 C -0.051 4.051 14 C -0.051 4.051 15 C -0.107 4.107 16 C -0.106 4.106 17 C -0.122 4.122 18 C -0.033 4.033 19 Cl -0.079 7.079 20 C -0.112 4.112 21 C -0.106 4.106 22 C 0.065 3.935 23 H 0.260 0.740 24 H -0.010 1.010 25 H 0.030 0.970 26 H 0.021 0.979 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.019 0.981 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.734 -18.423 -1.871 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.261 5.261 11 C -0.074 4.074 12 C -0.141 4.141 13 C -0.070 4.070 14 C -0.052 4.052 15 C -0.125 4.125 16 C -0.124 4.124 17 C -0.141 4.141 18 C -0.060 4.060 19 Cl -0.051 7.051 20 C -0.130 4.130 21 C -0.144 4.144 22 C -0.064 4.064 23 H 0.070 0.930 24 H 0.008 0.992 25 H 0.048 0.952 26 H 0.039 0.961 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.037 0.963 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.905 -18.342 -1.585 21.398 hybrid contribution -0.244 0.625 -0.799 1.044 sum 10.661 -17.717 -2.384 20.814 Atomic orbital electron populations 1.69966 1.06075 1.26652 1.51178 1.24996 0.94858 0.99333 0.95499 0.86459 0.80091 0.83478 0.77497 1.19640 1.21144 1.21024 1.21206 0.93524 0.89939 1.49799 0.91791 1.19712 0.90087 0.87415 0.96051 1.62040 1.27833 1.02625 1.33630 1.22004 0.94764 0.90496 1.00123 1.21644 0.97831 0.97892 0.96758 1.20315 0.94246 0.93148 0.99244 1.19992 0.96276 0.94761 0.94126 1.21237 0.94171 0.99105 0.97980 1.21121 0.98799 0.93669 0.98856 1.20997 0.98706 0.99428 0.94962 1.20900 0.99012 0.91176 0.94894 1.98361 1.98236 1.44658 1.63804 1.20996 0.98301 0.93408 1.00324 1.21706 0.98352 0.92906 1.01455 1.21936 0.94862 0.98849 0.90726 0.92993 0.99221 0.95222 0.96115 0.91266 0.92311 0.91049 0.90763 0.84935 0.85189 0.85340 0.85166 0.91099 0.92282 0.96321 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -14.06 8.43 -34.44 -0.29 -14.35 16 8 H 0.06 1.76 7.12 -52.49 -0.37 1.38 16 9 C 0.19 4.97 4.72 -4.98 -0.02 4.95 16 10 N -0.54 -11.28 4.65 -236.11 -1.10 -12.37 16 11 C 0.05 0.96 5.46 -3.84 -0.02 0.94 16 12 C -0.10 -1.45 5.23 -26.65 -0.14 -1.59 16 13 C -0.05 -0.67 2.43 -91.65 -0.22 -0.89 16 14 C -0.05 -0.60 4.79 -104.63 -0.50 -1.11 16 15 C -0.11 -1.17 8.66 -39.58 -0.34 -1.51 16 16 C -0.11 -1.01 10.05 -39.59 -0.40 -1.41 16 17 C -0.12 -1.19 9.83 -39.55 -0.39 -1.58 16 18 C -0.03 -0.36 6.32 -39.49 -0.25 -0.61 16 19 Cl -0.08 -0.80 28.96 -51.86 -1.50 -2.30 16 20 C -0.11 -1.26 9.46 -39.55 -0.37 -1.64 16 21 C -0.11 -1.57 5.22 -26.65 -0.14 -1.71 16 22 C 0.06 1.22 5.29 -3.83 -0.02 1.20 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 24 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 25 H 0.03 0.82 7.99 -51.93 -0.41 0.41 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.01 7.33 -51.93 -0.38 0.63 16 30 H 0.07 0.97 7.88 -51.93 -0.41 0.56 16 31 H 0.13 1.41 7.06 -52.49 -0.37 1.04 16 32 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.13 1.36 7.95 -52.49 -0.42 0.94 16 35 H 0.07 1.05 7.28 -51.93 -0.38 0.68 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 1.76 6.70 -51.93 -0.35 1.41 16 LS Contribution 321.54 15.07 4.85 4.85 Total: -1.00 -29.25 321.54 -10.85 -40.09 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -5.60 Total: -2.95 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -3.21 Total: -17.87 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: -0.36 Total: -38.28 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.25 -10.85 -40.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057537430.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.007 kcal (2) G-P(sol) polarization free energy of solvation -29.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds