Wall clock time and date at job start Wed Apr 15 2020 11:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00174 * 2 1 4 4 H 1.48500 * 109.47069 * 270.00012 * 3 2 1 5 5 H 1.48503 * 109.47158 * 29.99551 * 3 2 1 6 6 H 1.48504 * 109.47576 * 150.00168 * 3 2 1 7 7 C 1.38816 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00510 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99786 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99981 * 185.05020 * 9 7 2 11 11 H 1.09002 * 109.46683 * 39.05600 * 10 9 7 12 12 C 1.50695 * 109.47429 * 279.05264 * 10 9 7 13 13 C 1.38235 * 119.98824 * 319.72410 * 12 10 9 14 14 C 1.38212 * 120.01507 * 179.72820 * 13 12 10 15 15 C 1.38351 * 119.98673 * 0.54780 * 14 13 12 16 16 Cl 1.73598 * 120.01472 * 179.75101 * 15 14 13 17 17 C 1.38352 * 119.97296 * 359.72744 * 15 14 13 18 18 C 1.38219 * 119.98399 * 359.97438 * 17 15 14 19 19 C 1.53006 * 109.47085 * 159.04881 * 10 9 7 20 20 C 1.54270 * 110.02866 * 55.03260 * 19 10 9 21 21 C 1.54964 * 104.15768 * 217.13734 * 20 19 10 22 22 C 1.54894 * 102.78188 * 37.88703 * 21 20 19 23 23 C 1.53876 * 110.03223 * 297.81499 * 19 10 9 24 24 H 0.96999 * 120.00247 * 359.97438 * 1 2 3 25 25 H 0.97006 * 120.00263 * 5.05945 * 9 7 2 26 26 H 1.08004 * 119.99206 * 0.02562 * 13 12 10 27 27 H 1.08007 * 120.00722 * 180.27133 * 14 13 12 28 28 H 1.07999 * 120.00847 * 179.97438 * 17 15 14 29 29 H 1.07995 * 119.99200 * 180.02562 * 18 17 15 30 30 H 1.08995 * 110.01961 * 176.42090 * 19 10 9 31 31 H 1.08999 * 110.48792 * 335.78271 * 20 19 10 32 32 H 1.09001 * 110.48613 * 98.42953 * 20 19 10 33 33 H 1.09002 * 110.72177 * 279.57330 * 21 20 19 34 34 H 1.08995 * 110.92408 * 156.29844 * 21 20 19 35 35 H 1.08990 * 110.48975 * 203.40948 * 22 21 20 36 36 H 1.09004 * 110.59392 * 80.81330 * 22 21 20 37 37 H 1.09001 * 110.03084 * 238.56430 * 23 19 10 38 38 H 1.08997 * 110.03414 * 359.95059 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0538 -3.6543 0.1128 11 1 2.8745 -3.5398 0.8209 12 6 2.6042 -4.0386 -1.2364 13 6 1.8416 -3.8481 -2.3735 14 6 2.3481 -4.1951 -3.6118 15 6 3.6142 -4.7439 -3.7119 16 17 4.2485 -5.1860 -5.2662 17 6 4.3748 -4.9396 -2.5729 18 6 3.8695 -4.5864 -1.3358 19 6 1.1034 -4.7472 0.6061 20 6 -0.1273 -4.8347 -0.3201 21 6 -1.3050 -5.1337 0.6417 22 6 -0.9576 -4.2780 1.8852 23 6 0.5758 -4.3938 2.0077 24 1 -0.4850 0.8400 0.0004 25 1 0.3584 -2.3898 -0.0739 26 1 0.8517 -3.4234 -2.2948 27 1 1.7539 -4.0421 -4.5006 28 1 5.3630 -5.3683 -2.6504 29 1 4.4633 -4.7388 -0.4467 30 1 1.6197 -5.7067 0.6324 31 1 -0.2861 -3.8868 -0.8341 32 1 -0.0064 -5.6444 -1.0397 33 1 -1.3345 -6.1929 0.8977 34 1 -2.2528 -4.8165 0.2069 35 1 -1.4428 -4.6817 2.7737 36 1 -1.2506 -3.2396 1.7300 37 1 0.8355 -5.1822 2.7141 38 1 0.9976 -3.4441 2.3369 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182535945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:07 Heat of formation + Delta-G solvation = 0.183318 kcal Electronic energy + Delta-G solvation = -19904.797772 eV Core-core repulsion = 16964.751972 eV Total energy + Delta-G solvation = -2940.045801 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.80125 -39.02669 -37.33048 -35.94866 -33.73027 -31.93738 -31.11186 -29.76311 -29.30161 -26.20948 -24.85684 -23.52122 -22.03419 -21.35391 -20.04979 -19.23793 -17.98016 -16.82975 -16.70744 -16.23198 -16.03979 -15.84005 -15.14435 -14.76122 -14.42606 -14.32123 -14.12040 -13.93086 -13.67700 -12.98090 -12.86597 -12.80374 -12.42025 -12.36685 -12.14499 -11.92921 -11.84019 -11.78749 -11.70002 -11.61657 -11.36331 -11.25514 -11.14705 -10.87999 -9.84949 -9.37431 -8.92484 -7.89900 -5.16160 0.33877 0.48818 1.22279 1.46346 1.47530 1.54594 2.57591 2.81727 3.42592 3.76656 3.83793 3.94545 3.99635 4.06678 4.18285 4.24503 4.53886 4.56654 4.64516 4.70324 4.75103 4.83567 4.88901 4.93536 5.00395 5.03498 5.15033 5.18929 5.23096 5.34062 5.36400 5.44640 5.52546 5.55719 5.63926 5.71634 5.89501 6.00940 6.33339 7.41065 8.16734 8.41899 9.32819 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.006867 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.218864 B = 4076.633464 C = 5689.794159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.957 3.043 4 H -0.294 1.294 5 H -0.298 1.298 6 H -0.272 1.272 7 C -0.227 4.227 8 H 0.068 0.932 9 N -0.716 5.716 10 C 0.209 3.791 11 H 0.052 0.948 12 C -0.083 4.083 13 C -0.090 4.090 14 C -0.123 4.123 15 C -0.052 4.052 16 Cl -0.077 7.077 17 C -0.112 4.112 18 C -0.114 4.114 19 C -0.082 4.082 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.112 4.112 24 H 0.248 0.752 25 H 0.379 0.621 26 H 0.113 0.887 27 H 0.133 0.867 28 H 0.150 0.850 29 H 0.145 0.855 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.180 -14.419 -2.331 15.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.259 4.259 3 Si 0.787 3.213 4 H -0.222 1.222 5 H -0.224 1.224 6 H -0.198 1.198 7 C -0.359 4.359 8 H 0.085 0.915 9 N -0.357 5.357 10 C 0.100 3.900 11 H 0.070 0.930 12 C -0.086 4.086 13 C -0.108 4.108 14 C -0.142 4.142 15 C -0.079 4.079 16 Cl -0.048 7.048 17 C -0.131 4.131 18 C -0.133 4.133 19 C -0.101 4.101 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.159 4.159 23 C -0.149 4.149 24 H 0.057 0.943 25 H 0.214 0.786 26 H 0.131 0.869 27 H 0.151 0.849 28 H 0.167 0.833 29 H 0.163 0.837 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.095 0.905 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.372 -14.322 -2.416 15.168 hybrid contribution -0.030 1.551 -0.367 1.594 sum 4.341 -12.771 -2.783 13.772 Atomic orbital electron populations 1.69784 1.06184 1.25595 1.59871 1.25316 0.96122 1.00215 1.04288 0.85383 0.77938 0.80888 0.77048 1.22194 1.22442 1.19760 1.19473 0.91057 0.85297 1.40104 0.91452 1.42582 1.05989 1.00030 1.87136 1.19458 0.93837 0.86129 0.90583 0.93048 1.21200 0.94407 0.95134 0.97812 1.20953 1.00226 0.98002 0.91648 1.21136 0.94783 0.99822 0.98433 1.20925 0.95448 1.04729 0.86763 1.98331 1.86777 1.91625 1.28083 1.21178 1.00444 1.00833 0.90627 1.21218 0.95168 0.98989 0.97875 1.21935 0.95750 0.97579 0.94869 1.22446 0.94625 1.00787 0.97713 1.22468 0.97567 1.00129 0.95203 1.22285 0.95916 0.99096 0.98595 1.22081 0.95584 1.00904 0.96354 0.94295 0.78580 0.86883 0.84878 0.83252 0.83690 0.89189 0.93117 0.91255 0.89843 0.92094 0.90729 0.94388 0.90472 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.34 13.06 21.65 0.28 -57.06 16 2 C -0.07 -3.74 5.50 84.86 0.47 -3.28 16 3 Si 0.96 46.06 29.55 68.60 2.03 48.09 16 4 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.23 -12.10 9.88 84.03 0.83 -11.27 16 8 H 0.07 3.54 7.83 -2.91 -0.02 3.52 16 9 N -0.72 -33.34 3.63 -326.50 -1.19 -34.53 16 10 C 0.21 7.64 2.08 44.25 0.09 7.74 16 11 H 0.05 1.93 7.97 -2.39 -0.02 1.91 16 12 C -0.08 -2.81 4.77 -19.87 -0.09 -2.90 16 13 C -0.09 -3.16 8.21 22.26 0.18 -2.97 16 14 C -0.12 -3.84 9.83 22.29 0.22 -3.62 16 15 C -0.05 -1.48 6.32 22.32 0.14 -1.34 16 16 Cl -0.08 -1.91 28.96 -2.72 -0.08 -1.99 16 17 C -0.11 -2.97 9.83 22.29 0.22 -2.75 16 18 C -0.11 -3.26 9.67 22.27 0.22 -3.05 16 19 C -0.08 -2.48 2.76 -10.07 -0.03 -2.51 16 20 C -0.12 -3.54 4.72 31.70 0.15 -3.39 16 21 C -0.12 -3.09 6.91 31.91 0.22 -2.87 16 22 C -0.12 -3.64 6.83 31.67 0.22 -3.42 16 23 C -0.11 -3.40 6.22 31.32 0.19 -3.20 16 24 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 25 H 0.38 18.98 5.95 -92.70 -0.55 18.42 16 26 H 0.11 4.40 6.09 -2.91 -0.02 4.39 16 27 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 28 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 29 H 0.15 3.46 8.04 -2.91 -0.02 3.44 16 30 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.05 1.85 4.50 -2.39 -0.01 1.84 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.04 1.67 7.45 -2.39 -0.02 1.65 16 Total: -1.00 -59.53 319.30 4.57 -54.96 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.50 Total: 29.38 kcal Atomic # 6 Polarization: -41.87 SS G_CDS: 3.03 Total: -38.85 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -0.90 Total: -91.59 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.08 Total: -1.99 kcal Total: -59.53 4.57 -54.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182535945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.141 kcal (2) G-P(sol) polarization free energy of solvation -59.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds