Wall clock time and date at job start Wed Apr 15 2020 11:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99712 * 2 1 4 4 H 1.48501 * 109.47261 * 269.99976 * 3 2 1 5 5 H 1.48495 * 109.47556 * 30.00393 * 3 2 1 6 6 H 1.48501 * 109.46984 * 150.00340 * 3 2 1 7 7 C 1.37881 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99882 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99464 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46917 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47158 * 179.97438 * 10 9 7 12 12 C 1.46903 * 111.00167 * 179.97438 * 11 10 9 13 13 C 1.53779 * 113.61713 * 155.00073 * 12 11 10 14 14 C 1.53777 * 87.08245 * 89.20100 * 13 12 11 15 15 C 1.50695 * 113.61374 * 139.97923 * 14 13 12 16 16 C 1.38264 * 119.99076 * 120.00036 * 15 14 13 17 17 C 1.38225 * 120.02863 * 180.02562 * 16 15 14 18 18 C 1.38241 * 120.01088 * 0.02562 * 17 16 15 19 19 C 1.38333 * 119.98592 * 0.02562 * 18 17 16 20 20 Cl 1.73594 * 120.01231 * 180.02562 * 19 18 17 21 21 C 1.38192 * 119.99801 * 300.02520 * 15 14 13 22 22 C 1.53779 * 113.69435 * 252.53924 * 12 11 10 23 23 H 0.97001 * 120.00106 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47518 * 60.00189 * 9 7 2 25 25 H 1.09001 * 109.47183 * 299.99614 * 9 7 2 26 26 H 1.09000 * 109.47442 * 59.99941 * 10 9 7 27 27 H 1.09001 * 109.46789 * 299.99745 * 10 9 7 28 28 H 1.00893 * 111.00198 * 303.95308 * 11 10 9 29 29 H 1.09004 * 112.84860 * 23.80247 * 12 11 10 30 30 H 1.09004 * 113.61136 * 334.65262 * 13 12 11 31 31 H 1.09001 * 113.69135 * 203.76255 * 13 12 11 32 32 H 1.08993 * 113.61424 * 270.80173 * 14 13 12 33 33 H 1.07998 * 119.98988 * 359.97438 * 16 15 14 34 34 H 1.07999 * 119.99435 * 179.72466 * 17 16 15 35 35 H 1.07991 * 120.00516 * 179.97438 * 18 17 16 36 36 H 1.08002 * 120.00244 * 359.97438 * 21 15 14 37 37 H 1.09000 * 113.62046 * 156.32325 * 22 12 11 38 38 H 1.09000 * 113.61396 * 25.41217 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 7 5.4905 -2.6365 -0.0035 12 6 6.0170 -4.0079 -0.0040 13 6 7.4294 -4.1254 -0.6006 14 6 7.9648 -3.8658 0.8174 15 6 9.1618 -4.7088 1.1745 16 6 10.3594 -4.1030 1.5066 17 6 11.4580 -4.8754 1.8337 18 6 11.3600 -6.2543 1.8284 19 6 10.1623 -6.8610 1.4952 20 17 10.0382 -8.5925 1.4889 21 6 9.0624 -6.0871 1.1694 22 6 6.6340 -4.4335 1.3387 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8744 -0.6800 -0.8912 26 1 3.6578 -3.1498 -0.8924 27 1 3.6585 -3.1509 0.8875 28 1 5.8514 -2.1100 -0.7848 29 1 5.3103 -4.7325 -0.4089 30 1 7.6709 -3.3339 -1.3101 31 1 7.6632 -5.1200 -0.9803 32 1 8.1086 -2.8093 1.0432 33 1 10.4369 -3.0258 1.5097 34 1 12.3944 -4.4017 2.0888 35 1 12.2184 -6.8578 2.0836 36 1 8.1269 -6.5602 0.9099 37 1 6.6491 -5.5129 1.4899 38 1 6.2334 -3.8908 2.1949 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346337826.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:16 Heat of formation + Delta-G solvation = 26.315058 kcal Electronic energy + Delta-G solvation = -18362.495601 eV Core-core repulsion = 15423.582958 eV Total energy + Delta-G solvation = -2938.912643 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.34080 -38.44586 -36.68554 -34.80170 -32.62497 -31.18691 -31.00045 -29.08331 -25.72374 -25.18704 -23.73479 -22.86372 -21.52790 -20.38467 -18.83134 -17.54968 -16.74905 -15.99834 -15.64081 -15.29394 -14.87700 -14.65704 -14.17856 -13.97456 -13.82743 -13.25703 -13.06744 -12.58285 -12.54300 -12.17487 -12.14057 -11.82429 -11.62689 -11.36461 -11.28025 -11.05850 -10.91373 -10.55685 -10.29473 -10.05029 -9.83009 -9.65831 -9.23351 -9.12533 -8.86914 -8.54178 -7.96882 -6.04767 -4.03245 0.89345 0.98787 1.85640 3.31509 3.33070 3.39181 3.44724 4.32698 4.43132 4.45807 4.56897 4.67282 4.76724 4.83101 4.95930 4.99806 5.11618 5.23627 5.29728 5.40261 5.63191 5.67254 5.71007 5.80739 5.94658 5.98903 6.06540 6.15235 6.20286 6.22557 6.36467 6.46128 6.53959 6.76405 7.13917 7.36298 7.60888 7.74429 7.88857 8.52734 8.99432 9.57490 11.08601 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037118 B = 0.002764 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.173563 B =10128.624261 C =10664.707694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.010 4.010 10 C 0.075 3.925 11 N -0.676 5.676 12 C 0.063 3.937 13 C -0.135 4.135 14 C -0.066 4.066 15 C -0.050 4.050 16 C -0.113 4.113 17 C -0.106 4.106 18 C -0.122 4.122 19 C -0.032 4.032 20 Cl -0.076 7.076 21 C -0.109 4.109 22 C -0.125 4.125 23 H 0.263 0.737 24 H 0.025 0.975 25 H 0.008 0.992 26 H 0.023 0.977 27 H 0.065 0.935 28 H 0.337 0.663 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.079 0.921 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.619 -12.707 2.150 27.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.053 4.053 11 N -0.308 5.308 12 C -0.048 4.048 13 C -0.173 4.173 14 C -0.085 4.085 15 C -0.051 4.051 16 C -0.131 4.131 17 C -0.125 4.125 18 C -0.140 4.140 19 C -0.059 4.059 20 Cl -0.047 7.047 21 C -0.128 4.128 22 C -0.163 4.163 23 H 0.073 0.927 24 H 0.043 0.957 25 H 0.027 0.973 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.156 0.844 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.125 0.875 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.098 0.902 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 24.484 -12.676 2.829 27.716 hybrid contribution 0.152 0.432 -0.908 1.017 sum 24.637 -12.244 1.921 27.579 Atomic orbital electron populations 1.69917 1.06337 1.26929 1.51106 1.25016 0.94738 0.99234 0.94484 0.86739 0.80483 0.83420 0.78433 1.20411 1.21443 1.18760 1.21070 0.89399 0.94517 1.51023 0.91123 1.19546 0.96678 0.91845 0.96682 1.22009 0.83792 0.99998 0.99542 1.60458 1.10078 1.10889 1.49347 1.22537 0.94233 0.91652 0.96380 1.23322 0.96185 1.02116 0.95693 1.21521 0.90747 0.99250 0.96939 1.19910 0.95384 0.92882 0.96876 1.21238 0.92396 1.00483 0.98994 1.21113 0.99014 0.92900 0.99431 1.21016 0.96465 0.95147 1.01415 1.20920 0.95928 0.84397 1.04625 1.98371 1.98380 1.10817 1.97128 1.20952 0.97860 0.93254 1.00700 1.23142 0.94515 0.99974 0.98696 0.92722 0.95667 0.97336 0.95918 0.91672 0.84392 0.92475 0.91013 0.89840 0.87531 0.85327 0.85209 0.85249 0.84833 0.90231 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.92 9.66 -34.44 -0.33 -15.26 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.23 4.30 -27.89 -0.12 -0.35 16 10 C 0.07 1.48 5.47 -3.82 -0.02 1.46 16 11 N -0.68 -10.80 6.46 -105.86 -0.68 -11.48 16 12 C 0.06 0.82 4.22 -66.90 -0.28 0.54 16 13 C -0.14 -1.43 7.22 -25.92 -0.19 -1.62 16 14 C -0.07 -0.70 3.89 -90.96 -0.35 -1.06 16 15 C -0.05 -0.50 5.29 -104.63 -0.55 -1.05 16 16 C -0.11 -1.00 9.71 -39.58 -0.38 -1.39 16 17 C -0.11 -0.84 10.05 -39.59 -0.40 -1.24 16 18 C -0.12 -1.03 9.83 -39.55 -0.39 -1.42 16 19 C -0.03 -0.31 6.32 -39.50 -0.25 -0.56 16 20 Cl -0.08 -0.70 28.96 -51.86 -1.50 -2.20 16 21 C -0.11 -1.08 8.39 -39.55 -0.33 -1.41 16 22 C -0.13 -1.49 7.26 -25.92 -0.19 -1.67 16 23 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 24 H 0.03 0.62 7.20 -51.93 -0.37 0.24 16 25 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 26 H 0.02 0.45 8.13 -51.93 -0.42 0.03 16 27 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.34 5.06 8.38 -39.30 -0.33 4.73 16 29 H 0.06 0.78 7.87 -51.93 -0.41 0.37 16 30 H 0.07 0.74 7.91 -51.93 -0.41 0.33 16 31 H 0.08 0.81 7.72 -51.93 -0.40 0.41 16 32 H 0.11 1.18 8.09 -51.93 -0.42 0.76 16 33 H 0.13 0.96 8.05 -52.49 -0.42 0.53 16 34 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.13 1.26 6.66 -52.49 -0.35 0.91 16 37 H 0.08 0.84 6.31 -51.93 -0.33 0.52 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 327.26 15.07 4.93 4.93 Total: -1.00 -30.42 327.26 -10.57 -40.99 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.54 Total: 1.03 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -3.89 Total: -23.18 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.09 Total: -38.72 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.42 -10.57 -40.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346337826.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.308 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds