Wall clock time and date at job start Wed Apr 15 2020 11:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99712 * 2 1 4 4 H 1.48501 * 109.47261 * 269.99976 * 3 2 1 5 5 H 1.48495 * 109.47556 * 30.00393 * 3 2 1 6 6 H 1.48501 * 109.46984 * 150.00340 * 3 2 1 7 7 C 1.37881 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99882 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99464 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46917 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47158 * 179.97438 * 10 9 7 12 12 C 1.46903 * 111.00167 * 179.97438 * 11 10 9 13 13 C 1.53779 * 113.61713 * 155.00073 * 12 11 10 14 14 C 1.53777 * 87.08245 * 89.20100 * 13 12 11 15 15 C 1.50695 * 113.61374 * 139.97923 * 14 13 12 16 16 C 1.38264 * 119.99076 * 120.00036 * 15 14 13 17 17 C 1.38225 * 120.02863 * 180.02562 * 16 15 14 18 18 C 1.38241 * 120.01088 * 0.02562 * 17 16 15 19 19 C 1.38333 * 119.98592 * 0.02562 * 18 17 16 20 20 Cl 1.73594 * 120.01231 * 180.02562 * 19 18 17 21 21 C 1.38192 * 119.99801 * 300.02520 * 15 14 13 22 22 C 1.53779 * 113.69435 * 252.53924 * 12 11 10 23 23 H 0.97001 * 120.00106 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47518 * 60.00189 * 9 7 2 25 25 H 1.09001 * 109.47183 * 299.99614 * 9 7 2 26 26 H 1.09000 * 109.47442 * 59.99941 * 10 9 7 27 27 H 1.09001 * 109.46789 * 299.99745 * 10 9 7 28 28 H 1.00893 * 111.00198 * 303.95308 * 11 10 9 29 29 H 1.09004 * 112.84860 * 23.80247 * 12 11 10 30 30 H 1.09004 * 113.61136 * 334.65262 * 13 12 11 31 31 H 1.09001 * 113.69135 * 203.76255 * 13 12 11 32 32 H 1.08993 * 113.61424 * 270.80173 * 14 13 12 33 33 H 1.07998 * 119.98988 * 359.97438 * 16 15 14 34 34 H 1.07999 * 119.99435 * 179.72466 * 17 16 15 35 35 H 1.07991 * 120.00516 * 179.97438 * 18 17 16 36 36 H 1.08002 * 120.00244 * 359.97438 * 21 15 14 37 37 H 1.09000 * 113.62046 * 156.32325 * 22 12 11 38 38 H 1.09000 * 113.61396 * 25.41217 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 7 5.4905 -2.6365 -0.0035 12 6 6.0170 -4.0079 -0.0040 13 6 7.4294 -4.1254 -0.6006 14 6 7.9648 -3.8658 0.8174 15 6 9.1618 -4.7088 1.1745 16 6 10.3594 -4.1030 1.5066 17 6 11.4580 -4.8754 1.8337 18 6 11.3600 -6.2543 1.8284 19 6 10.1623 -6.8610 1.4952 20 17 10.0382 -8.5925 1.4889 21 6 9.0624 -6.0871 1.1694 22 6 6.6340 -4.4335 1.3387 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8744 -0.6800 -0.8912 26 1 3.6578 -3.1498 -0.8924 27 1 3.6585 -3.1509 0.8875 28 1 5.8514 -2.1100 -0.7848 29 1 5.3103 -4.7325 -0.4089 30 1 7.6709 -3.3339 -1.3101 31 1 7.6632 -5.1200 -0.9803 32 1 8.1086 -2.8093 1.0432 33 1 10.4369 -3.0258 1.5097 34 1 12.3944 -4.4017 2.0888 35 1 12.2184 -6.8578 2.0836 36 1 8.1269 -6.5602 0.9099 37 1 6.6491 -5.5129 1.4899 38 1 6.2334 -3.8908 2.1949 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346337826.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:14 Heat of formation + Delta-G solvation = 9.301863 kcal Electronic energy + Delta-G solvation = -18363.233349 eV Core-core repulsion = 15423.582958 eV Total energy + Delta-G solvation = -2939.650391 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.15158 -39.30199 -37.40450 -36.35164 -34.54999 -32.28705 -31.65594 -30.66355 -26.69516 -26.40885 -25.17635 -23.57705 -22.42220 -22.14786 -19.83960 -18.90468 -18.24999 -16.81089 -16.55704 -16.37179 -16.26145 -15.88818 -15.57388 -14.89187 -14.65260 -14.61508 -14.44825 -14.18911 -13.54652 -13.38721 -13.05662 -12.94662 -12.85776 -12.53252 -12.28096 -12.17828 -11.96902 -11.81794 -11.76467 -11.55836 -11.43803 -11.33030 -10.98324 -10.76712 -9.80136 -9.56168 -9.28952 -8.29814 -6.34728 0.22083 0.32553 1.17063 1.37354 1.40208 1.53210 2.37437 2.66067 3.05851 3.19119 3.63388 3.73669 3.86505 3.93245 4.05390 4.14291 4.32263 4.39355 4.44149 4.51745 4.53909 4.65676 4.76646 4.81487 4.91578 4.96799 5.02487 5.17792 5.18514 5.26929 5.30279 5.38279 5.47096 5.50830 5.64081 5.69775 5.89430 6.18612 6.26918 6.56753 6.74640 7.30275 8.87004 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037118 B = 0.002764 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.173563 B =10128.624261 C =10664.707694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.246 1.246 7 C -0.535 4.535 8 H 0.030 0.970 9 C -0.003 4.003 10 C 0.089 3.911 11 N -0.673 5.673 12 C 0.052 3.948 13 C -0.121 4.121 14 C -0.055 4.055 15 C -0.061 4.061 16 C -0.118 4.118 17 C -0.104 4.104 18 C -0.124 4.124 19 C -0.045 4.045 20 Cl -0.079 7.079 21 C -0.119 4.119 22 C -0.125 4.125 23 H 0.267 0.733 24 H 0.023 0.977 25 H 0.020 0.980 26 H 0.016 0.984 27 H 0.052 0.948 28 H 0.346 0.654 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.143 0.857 34 H 0.157 0.843 35 H 0.146 0.854 36 H 0.133 0.867 37 H 0.091 0.909 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.742 -11.915 2.060 30.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.169 1.169 7 C -0.574 4.574 8 H 0.048 0.952 9 C -0.041 4.041 10 C -0.040 4.040 11 N -0.305 5.305 12 C -0.059 4.059 13 C -0.159 4.159 14 C -0.074 4.074 15 C -0.061 4.061 16 C -0.136 4.136 17 C -0.122 4.122 18 C -0.143 4.143 19 C -0.072 4.072 20 Cl -0.050 7.050 21 C -0.137 4.137 22 C -0.163 4.163 23 H 0.076 0.924 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.034 0.966 27 H 0.070 0.930 28 H 0.165 0.835 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.161 0.839 34 H 0.175 0.825 35 H 0.164 0.836 36 H 0.150 0.850 37 H 0.109 0.891 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 27.631 -11.907 2.735 30.211 hybrid contribution -0.842 0.075 -0.858 1.204 sum 26.789 -11.832 1.877 29.346 Atomic orbital electron populations 1.70073 1.08393 1.28262 1.52551 1.26045 0.95648 1.03711 0.93948 0.85565 0.79455 0.77802 0.79240 1.18993 1.21095 1.16916 1.21428 0.92095 0.93150 1.50718 0.95197 1.19427 0.93393 0.94433 0.96854 1.21645 0.86384 0.97271 0.98680 1.60340 1.07307 1.12950 1.49880 1.22633 0.95470 0.89815 0.97956 1.23254 0.93652 1.03071 0.95939 1.21380 0.90403 0.99090 0.96498 1.19859 0.95572 0.92747 0.97970 1.21482 0.92223 1.01430 0.98471 1.21433 0.99803 0.92622 0.98325 1.21304 0.96539 0.95768 1.00660 1.21068 0.96455 0.84357 1.05306 1.98368 1.98416 1.11049 1.97177 1.20994 0.98078 0.93455 1.01212 1.23147 0.95325 1.00573 0.97235 0.92441 0.95833 0.96153 0.96559 0.92989 0.83493 0.93138 0.90223 0.88690 0.87797 0.83939 0.82546 0.83646 0.84955 0.89105 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.35 13.96 21.45 0.30 -60.06 16 2 C 0.00 0.19 5.47 84.66 0.46 0.65 16 3 Si 0.96 44.52 27.47 68.60 1.88 46.40 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 7 C -0.54 -31.32 9.66 25.60 0.25 -31.08 16 8 H 0.03 1.92 7.99 -2.92 -0.02 1.90 16 9 C 0.00 -0.15 4.30 29.85 0.13 -0.03 16 10 C 0.09 3.54 5.47 86.30 0.47 4.01 16 11 N -0.67 -20.71 6.46 -488.85 -3.16 -23.87 16 12 C 0.05 1.30 4.22 45.44 0.19 1.49 16 13 C -0.12 -2.32 7.22 31.12 0.22 -2.10 16 14 C -0.06 -1.07 3.89 -11.01 -0.04 -1.12 16 15 C -0.06 -1.09 5.29 -19.87 -0.11 -1.20 16 16 C -0.12 -1.78 9.71 22.27 0.22 -1.57 16 17 C -0.10 -1.33 10.05 22.27 0.22 -1.11 16 18 C -0.12 -1.81 9.83 22.29 0.22 -1.59 16 19 C -0.05 -0.80 6.32 22.32 0.14 -0.66 16 20 Cl -0.08 -1.38 28.96 -2.72 -0.08 -1.46 16 21 C -0.12 -2.18 8.39 22.29 0.19 -1.99 16 22 C -0.12 -2.86 7.26 31.12 0.23 -2.63 16 23 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 24 H 0.02 1.11 7.20 -2.39 -0.02 1.10 16 25 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 26 H 0.02 0.66 8.13 -2.39 -0.02 0.64 16 27 H 0.05 2.17 8.14 -2.39 -0.02 2.16 16 28 H 0.35 9.68 8.38 -89.70 -0.75 8.93 16 29 H 0.05 1.35 7.87 -2.38 -0.02 1.33 16 30 H 0.08 1.43 7.91 -2.39 -0.02 1.41 16 31 H 0.09 1.64 7.72 -2.39 -0.02 1.62 16 32 H 0.10 2.09 8.09 -2.39 -0.02 2.07 16 33 H 0.14 1.70 8.05 -2.91 -0.02 1.67 16 34 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 35 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.13 2.36 6.66 -2.91 -0.02 2.34 16 37 H 0.09 1.86 6.31 -2.39 -0.02 1.84 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -66.16 327.26 1.99 -64.17 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.25 Total: 13.72 kcal Atomic # 6 Polarization: -41.71 SS G_CDS: 2.79 Total: -38.92 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -2.86 Total: -83.92 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -66.16 1.99 -64.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346337826.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.476 kcal (2) G-P(sol) polarization free energy of solvation -66.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds