Wall clock time and date at job start Wed Apr 15 2020 11:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99912 * 2 1 4 4 H 1.48497 * 109.47059 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47102 * 299.99981 * 3 2 1 6 6 H 1.48497 * 109.47521 * 60.00182 * 3 2 1 7 7 C 1.37876 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99999 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99898 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46965 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99498 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46825 * 180.02562 * 11 10 9 13 13 C 1.50707 * 112.84985 * 309.66770 * 12 11 10 14 14 C 1.38259 * 119.99301 * 229.05873 * 13 12 11 15 15 C 1.38222 * 120.02347 * 180.29562 * 14 13 12 16 16 C 1.38233 * 120.01513 * 359.70299 * 15 14 13 17 17 C 1.38326 * 119.98737 * 0.02562 * 16 15 14 18 18 Cl 1.73597 * 120.01847 * 179.97438 * 17 16 15 19 19 C 1.38190 * 119.99063 * 48.79891 * 13 12 11 20 20 C 1.53782 * 113.69284 * 80.93066 * 12 11 10 21 21 C 1.53784 * 87.07655 * 89.13146 * 20 12 11 22 22 C 1.53771 * 87.08206 * 25.43278 * 21 20 12 23 23 H 0.97006 * 120.00119 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47274 * 59.99622 * 9 7 2 25 25 H 1.09006 * 109.46763 * 300.00017 * 9 7 2 26 26 H 1.00901 * 110.99926 * 56.04687 * 10 9 7 27 27 H 1.09001 * 109.47676 * 60.00206 * 11 10 9 28 28 H 1.08998 * 109.47107 * 299.99715 * 11 10 9 29 29 H 1.08002 * 119.98853 * 359.97438 * 14 13 12 30 30 H 1.08002 * 119.99233 * 179.72532 * 15 14 13 31 31 H 1.08002 * 120.00926 * 180.02562 * 16 15 14 32 32 H 1.08002 * 120.01169 * 0.02562 * 19 13 12 33 33 H 1.08997 * 113.61588 * 203.67376 * 20 12 11 34 34 H 1.09001 * 113.61371 * 334.58583 * 20 12 11 35 35 H 1.09007 * 113.61133 * 270.88428 * 21 20 12 36 36 H 1.09003 * 113.68989 * 139.99677 * 21 20 12 37 37 H 1.09004 * 113.62003 * 220.01781 * 22 21 20 38 38 H 1.09004 * 113.61590 * 89.12053 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5053 -4.9070 0.0011 12 6 2.5302 -6.0430 0.0018 13 6 3.5805 -5.8842 -1.0673 14 6 3.8852 -6.9451 -1.8999 15 6 4.8527 -6.8021 -2.8766 16 6 5.5119 -5.5962 -3.0255 17 6 5.2036 -4.5327 -2.1965 18 17 6.0314 -3.0182 -2.3825 19 6 4.2350 -4.6766 -1.2187 20 6 3.1089 -6.3524 1.3926 21 6 1.9402 -7.3355 1.5734 22 6 1.8972 -7.4439 0.0401 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5566 0.8904 26 1 2.8406 -3.5486 0.7819 27 1 0.8801 -4.9818 -0.8886 28 1 0.8808 -4.9811 0.8914 29 1 3.3707 -7.8876 -1.7836 30 1 5.0935 -7.6325 -3.5238 31 1 6.2676 -5.4844 -3.7890 32 1 3.9943 -3.8467 -0.5707 33 1 4.0853 -6.8359 1.3615 34 1 3.0765 -5.5050 2.0773 35 1 1.0488 -6.8795 2.0041 36 1 2.2221 -8.2645 2.0691 37 1 0.8866 -7.4776 -0.3671 38 1 2.5423 -8.2257 -0.3607 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872228851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:44 Heat of formation + Delta-G solvation = 40.664282 kcal Electronic energy + Delta-G solvation = -19595.438690 eV Core-core repulsion = 16657.148276 eV Total energy + Delta-G solvation = -2938.290414 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.35090 -37.93020 -35.95634 -34.92379 -32.39480 -30.88127 -30.34288 -27.85743 -25.80720 -25.37000 -23.29331 -22.14716 -21.48987 -21.35467 -18.35730 -17.00050 -16.46828 -15.56531 -15.17439 -14.88922 -14.64079 -14.43141 -14.07396 -13.64997 -13.44448 -13.17769 -12.58168 -12.33293 -12.14101 -12.09578 -11.53950 -11.35165 -11.19937 -11.04995 -10.95788 -10.79246 -10.70470 -10.67707 -10.28535 -10.15386 -10.01462 -9.79140 -9.16123 -8.49205 -8.44622 -8.35126 -7.28195 -6.03469 -4.05044 1.45681 1.64727 2.55169 3.31692 3.39364 3.44857 3.91842 4.42080 4.59027 4.68130 4.77020 4.91620 5.03304 5.15317 5.29076 5.33324 5.42849 5.49617 5.71787 5.73509 5.78063 5.85982 5.93159 5.98876 6.04007 6.08554 6.25151 6.32504 6.39417 6.50491 6.58939 6.76023 6.92731 7.16963 7.25313 7.41377 7.76841 8.10298 8.30250 8.54175 9.04042 9.60144 11.07697 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.006379 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.663354 B = 4388.556917 C = 6024.113215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.682 5.682 11 C 0.083 3.917 12 C -0.040 4.040 13 C -0.048 4.048 14 C -0.124 4.124 15 C -0.124 4.124 16 C -0.123 4.123 17 C -0.040 4.040 18 Cl -0.077 7.077 19 C -0.077 4.077 20 C -0.128 4.128 21 C -0.140 4.140 22 C -0.134 4.134 23 H 0.260 0.740 24 H 0.028 0.972 25 H -0.012 1.012 26 H 0.328 0.672 27 H 0.069 0.931 28 H 0.029 0.971 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.177 0.823 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.912 -15.896 -1.274 17.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.066 3.934 10 N -0.313 5.313 11 C -0.047 4.047 12 C -0.041 4.041 13 C -0.048 4.048 14 C -0.142 4.142 15 C -0.142 4.142 16 C -0.142 4.142 17 C -0.067 4.067 18 Cl -0.048 7.048 19 C -0.095 4.095 20 C -0.165 4.165 21 C -0.178 4.178 22 C -0.171 4.171 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.005 0.995 26 H 0.145 0.855 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.193 0.807 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.896 -15.606 -1.974 17.601 hybrid contribution 0.058 1.077 0.649 1.259 sum 7.955 -14.529 -1.325 16.617 Atomic orbital electron populations 1.69972 1.06076 1.26650 1.51061 1.24963 0.94828 0.99325 0.95343 0.86477 0.80224 0.83492 0.77480 1.19543 1.21018 1.21135 1.21197 0.93530 0.90118 1.50131 0.91831 1.19588 0.90583 0.87291 0.95893 1.60889 1.20962 1.01558 1.47875 1.21655 0.93781 0.88930 1.00294 1.20868 0.94486 0.95352 0.93358 1.19466 0.96219 0.92826 0.96319 1.21178 0.98165 0.98961 0.95884 1.20892 0.97392 0.96863 0.99077 1.20965 1.01135 0.92542 0.99510 1.21049 0.98211 0.87484 0.99949 1.98363 1.77651 1.31708 1.97098 1.22113 0.91175 0.99030 0.97225 1.22987 0.98046 0.99455 0.96011 1.22807 0.99135 0.99459 0.96376 1.23081 1.01125 0.96435 0.96506 0.93004 0.95355 0.99458 0.85490 0.91276 0.95320 0.85897 0.86039 0.85967 0.80679 0.90142 0.91138 0.90077 0.91677 0.91198 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.51 -14.20 9.32 -34.44 -0.32 -14.52 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.19 4.90 5.44 -4.97 -0.03 4.87 16 10 N -0.68 -13.71 3.36 -115.05 -0.39 -14.10 16 11 C 0.08 1.40 5.01 -3.82 -0.02 1.38 16 12 C -0.04 -0.55 0.97 -154.85 -0.15 -0.70 16 13 C -0.05 -0.70 5.03 -104.63 -0.53 -1.23 16 14 C -0.12 -1.58 9.20 -39.58 -0.36 -1.94 16 15 C -0.12 -1.52 10.05 -39.59 -0.40 -1.91 16 16 C -0.12 -1.67 9.83 -39.55 -0.39 -2.06 16 17 C -0.04 -0.64 6.32 -39.50 -0.25 -0.89 16 18 Cl -0.08 -1.25 28.96 -51.86 -1.50 -2.75 16 19 C -0.08 -1.29 8.62 -39.55 -0.34 -1.63 16 20 C -0.13 -1.55 7.15 -25.92 -0.19 -1.73 16 21 C -0.14 -1.50 7.73 -25.92 -0.20 -1.70 16 22 C -0.13 -1.48 6.69 -25.93 -0.17 -1.65 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H -0.01 -0.33 8.14 -51.93 -0.42 -0.76 16 26 H 0.33 6.31 7.70 -39.29 -0.30 6.01 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.03 0.48 7.34 -51.93 -0.38 0.10 16 29 H 0.12 1.29 5.76 -52.49 -0.30 0.99 16 30 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.18 3.26 4.77 -52.49 -0.25 3.01 16 33 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 34 H 0.07 0.90 7.94 -51.93 -0.41 0.49 16 35 H 0.08 0.89 7.64 -51.92 -0.40 0.50 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 38 H 0.09 0.83 5.95 -51.93 -0.31 0.52 16 LS Contribution 321.38 15.07 4.84 4.84 Total: -1.00 -29.33 321.38 -10.05 -39.38 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.28 Total: 4.04 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -3.44 Total: -22.19 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.35 Total: -40.12 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.50 Total: -2.75 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.33 -10.05 -39.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872228851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.044 kcal (2) G-P(sol) polarization free energy of solvation -29.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds