Wall clock time and date at job start Wed Apr 15 2020 11:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99912 * 2 1 4 4 H 1.48497 * 109.47059 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47102 * 299.99981 * 3 2 1 6 6 H 1.48497 * 109.47521 * 60.00182 * 3 2 1 7 7 C 1.37876 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99999 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99898 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46965 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99498 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46825 * 180.02562 * 11 10 9 13 13 C 1.50707 * 112.84985 * 309.66770 * 12 11 10 14 14 C 1.38259 * 119.99301 * 229.05873 * 13 12 11 15 15 C 1.38222 * 120.02347 * 180.29562 * 14 13 12 16 16 C 1.38233 * 120.01513 * 359.70299 * 15 14 13 17 17 C 1.38326 * 119.98737 * 0.02562 * 16 15 14 18 18 Cl 1.73597 * 120.01847 * 179.97438 * 17 16 15 19 19 C 1.38190 * 119.99063 * 48.79891 * 13 12 11 20 20 C 1.53782 * 113.69284 * 80.93066 * 12 11 10 21 21 C 1.53784 * 87.07655 * 89.13146 * 20 12 11 22 22 C 1.53771 * 87.08206 * 25.43278 * 21 20 12 23 23 H 0.97006 * 120.00119 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47274 * 59.99622 * 9 7 2 25 25 H 1.09006 * 109.46763 * 300.00017 * 9 7 2 26 26 H 1.00901 * 110.99926 * 56.04687 * 10 9 7 27 27 H 1.09001 * 109.47676 * 60.00206 * 11 10 9 28 28 H 1.08998 * 109.47107 * 299.99715 * 11 10 9 29 29 H 1.08002 * 119.98853 * 359.97438 * 14 13 12 30 30 H 1.08002 * 119.99233 * 179.72532 * 15 14 13 31 31 H 1.08002 * 120.00926 * 180.02562 * 16 15 14 32 32 H 1.08002 * 120.01169 * 0.02562 * 19 13 12 33 33 H 1.08997 * 113.61588 * 203.67376 * 20 12 11 34 34 H 1.09001 * 113.61371 * 334.58583 * 20 12 11 35 35 H 1.09007 * 113.61133 * 270.88428 * 21 20 12 36 36 H 1.09003 * 113.68989 * 139.99677 * 21 20 12 37 37 H 1.09004 * 113.62003 * 220.01781 * 22 21 20 38 38 H 1.09004 * 113.61590 * 89.12053 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5053 -4.9070 0.0011 12 6 2.5302 -6.0430 0.0018 13 6 3.5805 -5.8842 -1.0673 14 6 3.8852 -6.9451 -1.8999 15 6 4.8527 -6.8021 -2.8766 16 6 5.5119 -5.5962 -3.0255 17 6 5.2036 -4.5327 -2.1965 18 17 6.0314 -3.0182 -2.3825 19 6 4.2350 -4.6766 -1.2187 20 6 3.1089 -6.3524 1.3926 21 6 1.9402 -7.3355 1.5734 22 6 1.8972 -7.4439 0.0401 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5566 0.8904 26 1 2.8406 -3.5486 0.7819 27 1 0.8801 -4.9818 -0.8886 28 1 0.8808 -4.9811 0.8914 29 1 3.3707 -7.8876 -1.7836 30 1 5.0935 -7.6325 -3.5238 31 1 6.2676 -5.4844 -3.7890 32 1 3.9943 -3.8467 -0.5707 33 1 4.0853 -6.8359 1.3615 34 1 3.0765 -5.5050 2.0773 35 1 1.0488 -6.8795 2.0041 36 1 2.2221 -8.2645 2.0691 37 1 0.8866 -7.4776 -0.3671 38 1 2.5423 -8.2257 -0.3607 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872228851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:44 Heat of formation + Delta-G solvation = 25.879633 kcal Electronic energy + Delta-G solvation = -19596.079801 eV Core-core repulsion = 16657.148276 eV Total energy + Delta-G solvation = -2938.931525 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.42458 -38.99748 -37.15760 -36.65433 -34.42428 -32.02161 -31.43328 -29.59919 -27.08864 -26.60013 -24.71817 -23.44597 -23.07267 -22.45353 -19.50818 -18.51866 -17.97327 -17.03937 -16.54441 -16.21097 -15.96602 -15.65001 -15.49674 -15.02903 -14.80781 -14.34028 -14.23768 -13.67712 -13.47328 -13.32201 -13.21519 -12.77646 -12.65106 -12.42597 -12.32937 -12.20055 -12.12857 -12.00364 -11.81413 -11.42986 -11.21161 -11.13008 -10.94719 -10.65379 -9.59239 -9.44707 -8.97991 -8.23372 -6.32825 0.37154 0.56192 1.37074 1.37730 1.39221 1.52545 2.38274 2.83361 3.10671 3.37696 3.65961 3.80919 3.90712 3.98240 4.06128 4.20163 4.35788 4.41557 4.63872 4.68810 4.75340 4.81005 4.90756 4.93346 4.99881 5.07134 5.12614 5.15516 5.23828 5.30422 5.35189 5.54046 5.55577 5.61699 5.64818 5.83913 6.01555 6.11879 6.42000 6.68444 6.88205 7.37692 8.88481 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.006379 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.663354 B = 4388.556917 C = 6024.113215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.063 0.937 9 C 0.209 3.791 10 N -0.673 5.673 11 C 0.085 3.915 12 C -0.045 4.045 13 C -0.057 4.057 14 C -0.120 4.120 15 C -0.114 4.114 16 C -0.126 4.126 17 C -0.059 4.059 18 Cl -0.093 7.093 19 C -0.105 4.105 20 C -0.127 4.127 21 C -0.133 4.133 22 C -0.122 4.122 23 H 0.264 0.736 24 H -0.003 1.003 25 H -0.037 1.037 26 H 0.333 0.667 27 H 0.054 0.946 28 H 0.028 0.972 29 H 0.154 0.846 30 H 0.160 0.840 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.104 -18.101 -1.728 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.081 0.919 9 C 0.082 3.918 10 N -0.304 5.304 11 C -0.045 4.045 12 C -0.046 4.046 13 C -0.057 4.057 14 C -0.137 4.137 15 C -0.132 4.132 16 C -0.145 4.145 17 C -0.086 4.086 18 Cl -0.064 7.064 19 C -0.124 4.124 20 C -0.164 4.164 21 C -0.170 4.170 22 C -0.160 4.160 23 H 0.073 0.927 24 H 0.015 0.985 25 H -0.020 1.020 26 H 0.151 0.849 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.171 0.829 30 H 0.177 0.823 31 H 0.158 0.842 32 H 0.166 0.834 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.100 -17.832 -2.420 20.165 hybrid contribution -0.315 1.683 0.768 1.877 sum 8.785 -16.149 -1.652 18.458 Atomic orbital electron populations 1.70090 1.07656 1.27765 1.51918 1.25855 0.95687 1.03070 0.94830 0.85410 0.79029 0.78920 0.77756 1.18880 1.20585 1.20131 1.21521 0.93658 0.91331 1.49900 0.91905 1.19197 0.90605 0.88911 0.93115 1.60819 1.19818 1.01587 1.48174 1.21672 0.94691 0.88622 0.99479 1.20819 0.93882 0.95524 0.94362 1.19607 0.96245 0.92824 0.97066 1.21523 0.97958 0.99342 0.94891 1.21347 0.96011 0.97126 0.98738 1.21257 1.01577 0.92349 0.99274 1.21229 0.98723 0.87713 1.00907 1.98347 1.77923 1.32954 1.97169 1.21947 0.92968 0.99443 0.98034 1.23007 0.99308 0.99552 0.94536 1.22773 0.97981 0.99849 0.96422 1.23100 1.01416 0.94680 0.96772 0.92716 0.98499 1.01977 0.84911 0.92717 0.95384 0.82886 0.82288 0.84158 0.83380 0.88925 0.92626 0.90888 0.89335 0.91033 0.87218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 2 C 0.00 0.21 5.46 84.65 0.46 0.68 16 3 Si 0.96 45.39 29.54 68.60 2.03 47.41 16 4 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.53 -30.19 9.32 25.60 0.24 -29.95 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.21 11.21 5.44 85.56 0.47 11.68 16 10 N -0.67 -28.36 3.36 -517.91 -1.74 -30.10 16 11 C 0.08 2.94 5.01 86.30 0.43 3.37 16 12 C -0.05 -1.19 0.97 -52.40 -0.05 -1.24 16 13 C -0.06 -1.60 5.03 -19.87 -0.10 -1.70 16 14 C -0.12 -2.63 9.20 22.27 0.20 -2.42 16 15 C -0.11 -2.36 10.05 22.26 0.22 -2.13 16 16 C -0.13 -3.16 9.83 22.29 0.22 -2.94 16 17 C -0.06 -1.87 6.32 22.33 0.14 -1.73 16 18 Cl -0.09 -3.05 28.96 -2.72 -0.08 -3.13 16 19 C -0.11 -3.54 8.62 22.29 0.19 -3.35 16 20 C -0.13 -2.89 7.15 31.12 0.22 -2.67 16 21 C -0.13 -2.50 7.73 31.12 0.24 -2.26 16 22 C -0.12 -2.33 6.69 31.11 0.21 -2.12 16 23 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 24 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 25 H -0.04 -2.15 8.14 -2.38 -0.02 -2.17 16 26 H 0.33 13.48 7.70 -89.69 -0.69 12.79 16 27 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 28 H 0.03 0.97 7.34 -2.39 -0.02 0.95 16 29 H 0.15 2.41 5.76 -2.91 -0.02 2.39 16 30 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.15 5.76 4.77 -2.91 -0.01 5.74 16 33 H 0.09 1.91 8.09 -2.39 -0.02 1.89 16 34 H 0.05 1.42 7.94 -2.39 -0.02 1.40 16 35 H 0.07 1.50 7.64 -2.38 -0.02 1.48 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.37 8.10 -2.38 -0.02 1.35 16 38 H 0.11 1.59 5.95 -2.38 -0.01 1.58 16 Total: -1.00 -65.42 321.38 3.97 -61.45 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.37 Total: 17.93 kcal Atomic # 6 Polarization: -39.88 SS G_CDS: 3.10 Total: -36.78 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -1.46 Total: -86.88 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 17 Polarization: -3.05 SS G_CDS: -0.08 Total: -3.13 kcal Total: -65.42 3.97 -61.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872228851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.330 kcal (2) G-P(sol) polarization free energy of solvation -65.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds