Wall clock time and date at job start Wed Apr 15 2020 11:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86802 * 120.00355 * 2 1 4 4 H 1.48492 * 109.47215 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46823 * 300.00360 * 3 2 1 6 6 H 1.48500 * 109.46726 * 59.99895 * 3 2 1 7 7 C 1.39882 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00124 * 178.25244 * 7 2 1 9 9 C 1.41007 * 120.00009 * 358.24501 * 7 2 1 10 10 C 1.40747 * 120.30728 * 34.03011 * 9 7 2 11 11 C 1.36419 * 119.94893 * 180.25528 * 10 9 7 12 12 C 1.38942 * 120.61773 * 359.77397 * 11 10 9 13 13 C 1.38093 * 120.63611 * 359.97438 * 12 11 10 14 14 C 1.38850 * 120.01882 * 359.97438 * 13 12 11 15 15 N 1.38594 * 120.30141 * 179.97438 * 14 13 12 16 16 C 1.39913 * 119.99978 * 7.57254 * 15 14 13 17 17 C 1.40980 * 119.93570 * 41.59318 * 16 15 14 18 18 C 1.35911 * 119.65641 * 180.02562 * 17 16 15 19 19 C 1.40961 * 119.46382 * 359.97438 * 18 17 16 20 20 N 1.32649 * 132.20874 * 180.38297 * 19 18 17 21 21 C 1.33476 * 109.15682 * 180.09125 * 20 19 18 22 22 C 1.35142 * 108.60744 * 359.56048 * 21 20 19 23 23 N 1.36827 * 107.18041 * 0.26653 * 22 21 20 24 24 C 1.35676 * 119.93795 * 221.60666 * 16 15 14 25 25 H 0.97001 * 119.99690 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.02723 * 0.02954 * 10 9 7 27 27 H 1.08002 * 119.69064 * 179.78990 * 11 10 9 28 28 H 1.07994 * 119.68406 * 180.02562 * 12 11 10 29 29 H 1.08000 * 119.99126 * 179.97438 * 13 12 11 30 30 H 0.97000 * 119.99767 * 187.58372 * 15 14 13 31 31 H 1.08000 * 120.17796 * 359.97438 * 17 16 15 32 32 H 1.08001 * 120.26940 * 179.97438 * 18 17 16 33 33 H 1.08003 * 125.69503 * 179.82529 * 21 20 19 34 34 H 1.08001 * 126.40913 * 180.22970 * 22 21 20 35 35 H 1.08001 * 119.74855 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.7031 1.3463 0.0006 5 1 1.8844 2.3964 -1.2125 6 1 1.8844 2.3964 1.2125 7 6 2.0085 -1.2114 -0.0005 8 1 3.0881 -1.2116 -0.0291 9 6 1.3040 -2.4323 0.0363 10 6 0.0591 -2.5538 -0.6092 11 6 -0.6186 -3.7368 -0.5645 12 6 -0.0898 -4.8303 0.1103 13 6 1.1318 -4.7403 0.7477 14 6 1.8447 -3.5491 0.7181 15 7 3.0711 -3.4521 1.3564 16 6 3.6704 -4.5947 1.8977 17 6 3.6416 -5.8097 1.1834 18 6 4.2250 -6.9162 1.7148 19 6 4.8519 -6.8323 2.9745 20 7 5.4915 -7.7295 3.7132 21 6 5.9066 -7.1514 4.8424 22 6 5.5338 -5.8525 4.8242 23 7 4.8667 -5.6399 3.6487 24 6 4.2778 -4.5312 3.1092 25 1 -0.4850 0.8401 0.0004 26 1 -0.3608 -1.7100 -1.1364 27 1 -1.5751 -3.8244 -1.0584 28 1 -0.6391 -5.7598 0.1357 29 1 1.5329 -5.5966 1.2695 30 1 3.5139 -2.5920 1.4279 31 1 3.1577 -5.8613 0.2192 32 1 4.2084 -7.8523 1.1763 33 1 6.4532 -7.6391 5.6360 34 1 5.7260 -5.1196 5.5939 35 1 4.2957 -3.5974 3.6515 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174278477.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:57 Heat of formation + Delta-G solvation = 120.694006 kcal Electronic energy + Delta-G solvation = -20340.847001 eV Core-core repulsion = 17304.919442 eV Total energy + Delta-G solvation = -3035.927559 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.49336 -38.96636 -37.00601 -34.20376 -33.70671 -33.29651 -30.05265 -29.32043 -28.61783 -27.18078 -25.24314 -23.65581 -22.30445 -21.49660 -20.96558 -20.24397 -17.80963 -17.29808 -17.08689 -16.21058 -15.83938 -15.52817 -15.00781 -14.45780 -14.32322 -14.14451 -13.56026 -13.19174 -12.91275 -12.77026 -12.65195 -12.15720 -11.71859 -11.49191 -11.32833 -11.22073 -11.09153 -10.75677 -10.55078 -9.97952 -9.89732 -9.76408 -9.65151 -9.31928 -8.33097 -7.64997 -7.47977 -6.79457 -6.50756 -4.44424 0.99473 1.52448 2.67216 2.80353 2.85826 3.00825 3.03375 3.08535 3.16270 3.77157 3.85808 4.04468 4.46178 4.59472 4.77616 5.00888 5.17641 5.42478 5.47495 5.51122 5.63025 6.04012 6.06677 6.13173 6.27340 6.30093 6.41474 6.65494 6.81480 6.82437 6.95294 7.10594 7.21158 7.32607 7.50673 7.65355 7.96661 7.98230 8.07067 8.19001 8.39668 8.54478 8.77453 8.84350 10.17868 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.004805 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.937029 B = 5825.441993 C = 6885.455521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.470 4.470 8 H 0.073 0.927 9 C 0.078 3.922 10 C -0.125 4.125 11 C -0.137 4.137 12 C -0.193 4.193 13 C -0.159 4.159 14 C 0.075 3.925 15 N -0.659 5.659 16 C 0.188 3.812 17 C -0.108 4.108 18 C -0.072 4.072 19 C 0.203 3.797 20 N -0.501 5.501 21 C 0.019 3.981 22 C -0.107 4.107 23 N -0.333 5.333 24 C -0.044 4.044 25 H 0.278 0.722 26 H 0.130 0.870 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.410 0.590 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.175 0.825 34 H 0.176 0.824 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.367 -4.948 4.240 9.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.501 4.501 8 H 0.091 0.909 9 C 0.074 3.926 10 C -0.145 4.145 11 C -0.156 4.156 12 C -0.213 4.213 13 C -0.180 4.180 14 C -0.021 4.021 15 N -0.282 5.282 16 C 0.084 3.916 17 C -0.133 4.133 18 C -0.093 4.093 19 C -0.041 4.041 20 N -0.222 5.222 21 C -0.135 4.135 22 C -0.241 4.241 23 N -0.002 5.002 24 C -0.172 4.172 25 H 0.089 0.911 26 H 0.148 0.852 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.249 0.751 31 H 0.168 0.832 32 H 0.168 0.832 33 H 0.192 0.808 34 H 0.193 0.807 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.212 -5.586 4.007 9.265 hybrid contribution 0.338 2.126 0.500 2.211 sum 6.550 -3.460 4.507 8.671 Atomic orbital electron populations 1.69779 1.07198 1.28693 1.37958 1.25781 0.94902 1.00941 0.92571 0.86204 0.80444 0.81145 0.78548 1.18718 1.19889 1.20031 1.19201 0.94155 0.90061 1.46722 0.90906 1.17268 0.93590 0.90815 0.90910 1.21133 0.96377 0.96417 1.00607 1.20483 0.99046 0.94279 1.01804 1.20269 0.96985 0.97966 1.06033 1.20430 0.96664 0.95973 1.04975 1.17909 0.86892 0.96619 1.00707 1.41508 1.20103 1.06866 1.59707 1.16923 0.94821 0.89286 0.90526 1.21357 0.99317 0.91562 1.01108 1.20076 0.97712 0.99926 0.91546 1.20876 1.04562 0.82037 0.96635 1.70692 1.16747 1.29686 1.05036 1.22344 1.02872 0.91261 0.97029 1.22541 1.09223 1.00501 0.91785 1.42383 1.34085 1.09116 1.14661 1.20945 1.09172 0.91530 0.95538 0.91093 0.85249 0.89275 0.89087 0.88197 0.75149 0.83155 0.83201 0.80804 0.80715 0.82477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.84 10.64 55.54 0.59 -19.24 16 2 C 0.07 1.72 5.40 -17.33 -0.09 1.63 16 3 Si 0.91 17.73 29.56 -169.99 -5.02 12.71 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.47 -11.25 8.26 -37.92 -0.31 -11.56 16 8 H 0.07 1.65 7.08 -52.49 -0.37 1.28 16 9 C 0.08 1.89 5.56 -106.63 -0.59 1.30 16 10 C -0.12 -3.03 8.60 -39.29 -0.34 -3.37 16 11 C -0.14 -3.01 9.96 -39.98 -0.40 -3.41 16 12 C -0.19 -4.01 10.03 -39.37 -0.40 -4.41 16 13 C -0.16 -3.29 8.02 -39.41 -0.32 -3.60 16 14 C 0.07 1.62 6.46 -83.30 -0.54 1.08 16 15 N -0.66 -12.22 5.36 -8.24 -0.04 -12.27 16 16 C 0.19 3.11 5.81 -84.05 -0.49 2.62 16 17 C -0.11 -1.68 7.36 -39.38 -0.29 -1.97 16 18 C -0.07 -1.06 10.09 -39.39 -0.40 -1.46 16 19 C 0.20 3.33 7.80 -156.04 -1.22 2.11 16 20 N -0.50 -8.29 11.32 -12.78 -0.14 -8.44 16 21 C 0.02 0.26 11.83 -17.94 -0.21 0.04 16 22 C -0.11 -1.42 11.76 -16.42 -0.19 -1.61 16 23 N -0.33 -5.15 2.95 -62.42 -0.18 -5.33 16 24 C -0.04 -0.68 10.86 -16.33 -0.18 -0.85 16 25 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 26 H 0.13 3.28 6.17 -52.49 -0.32 2.96 16 27 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 29 H 0.10 1.89 5.33 -52.49 -0.28 1.61 16 30 H 0.41 7.36 7.30 -40.82 -0.30 7.06 16 31 H 0.15 2.32 6.68 -52.49 -0.35 1.97 16 32 H 0.15 1.84 8.06 -52.49 -0.42 1.41 16 33 H 0.17 1.72 8.06 -52.48 -0.42 1.29 16 34 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.16 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 298.17 15.07 4.49 4.49 Total: -1.00 -27.37 298.17 -9.57 -36.94 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -3.30 Total: 14.58 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -5.96 Total: -23.45 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.22 Total: -45.28 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.02 Total: 12.71 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.37 -9.57 -36.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174278477.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.637 kcal (2) G-P(sol) polarization free energy of solvation -27.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds