Wall clock time and date at job start Wed Apr 15 2020 11:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86802 * 120.00355 * 2 1 4 4 H 1.48492 * 109.47215 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46823 * 300.00360 * 3 2 1 6 6 H 1.48500 * 109.46726 * 59.99895 * 3 2 1 7 7 C 1.39882 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00124 * 178.25244 * 7 2 1 9 9 C 1.41007 * 120.00009 * 358.24501 * 7 2 1 10 10 C 1.40747 * 120.30728 * 34.03011 * 9 7 2 11 11 C 1.36419 * 119.94893 * 180.25528 * 10 9 7 12 12 C 1.38942 * 120.61773 * 359.77397 * 11 10 9 13 13 C 1.38093 * 120.63611 * 359.97438 * 12 11 10 14 14 C 1.38850 * 120.01882 * 359.97438 * 13 12 11 15 15 N 1.38594 * 120.30141 * 179.97438 * 14 13 12 16 16 C 1.39913 * 119.99978 * 7.57254 * 15 14 13 17 17 C 1.40980 * 119.93570 * 41.59318 * 16 15 14 18 18 C 1.35911 * 119.65641 * 180.02562 * 17 16 15 19 19 C 1.40961 * 119.46382 * 359.97438 * 18 17 16 20 20 N 1.32649 * 132.20874 * 180.38297 * 19 18 17 21 21 C 1.33476 * 109.15682 * 180.09125 * 20 19 18 22 22 C 1.35142 * 108.60744 * 359.56048 * 21 20 19 23 23 N 1.36827 * 107.18041 * 0.26653 * 22 21 20 24 24 C 1.35676 * 119.93795 * 221.60666 * 16 15 14 25 25 H 0.97001 * 119.99690 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.02723 * 0.02954 * 10 9 7 27 27 H 1.08002 * 119.69064 * 179.78990 * 11 10 9 28 28 H 1.07994 * 119.68406 * 180.02562 * 12 11 10 29 29 H 1.08000 * 119.99126 * 179.97438 * 13 12 11 30 30 H 0.97000 * 119.99767 * 187.58372 * 15 14 13 31 31 H 1.08000 * 120.17796 * 359.97438 * 17 16 15 32 32 H 1.08001 * 120.26940 * 179.97438 * 18 17 16 33 33 H 1.08003 * 125.69503 * 179.82529 * 21 20 19 34 34 H 1.08001 * 126.40913 * 180.22970 * 22 21 20 35 35 H 1.08001 * 119.74855 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.7031 1.3463 0.0006 5 1 1.8844 2.3964 -1.2125 6 1 1.8844 2.3964 1.2125 7 6 2.0085 -1.2114 -0.0005 8 1 3.0881 -1.2116 -0.0291 9 6 1.3040 -2.4323 0.0363 10 6 0.0591 -2.5538 -0.6092 11 6 -0.6186 -3.7368 -0.5645 12 6 -0.0898 -4.8303 0.1103 13 6 1.1318 -4.7403 0.7477 14 6 1.8447 -3.5491 0.7181 15 7 3.0711 -3.4521 1.3564 16 6 3.6704 -4.5947 1.8977 17 6 3.6416 -5.8097 1.1834 18 6 4.2250 -6.9162 1.7148 19 6 4.8519 -6.8323 2.9745 20 7 5.4915 -7.7295 3.7132 21 6 5.9066 -7.1514 4.8424 22 6 5.5338 -5.8525 4.8242 23 7 4.8667 -5.6399 3.6487 24 6 4.2778 -4.5312 3.1092 25 1 -0.4850 0.8401 0.0004 26 1 -0.3608 -1.7100 -1.1364 27 1 -1.5751 -3.8244 -1.0584 28 1 -0.6391 -5.7598 0.1357 29 1 1.5329 -5.5966 1.2695 30 1 3.5139 -2.5920 1.4279 31 1 3.1577 -5.8613 0.2192 32 1 4.2084 -7.8523 1.1763 33 1 6.4532 -7.6391 5.6360 34 1 5.7260 -5.1196 5.5939 35 1 4.2957 -3.5974 3.6515 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174278477.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:56 Heat of formation + Delta-G solvation = 108.271856 kcal Electronic energy + Delta-G solvation = -20341.385665 eV Core-core repulsion = 17304.919442 eV Total energy + Delta-G solvation = -3036.466224 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.64328 -40.44513 -38.43595 -35.61651 -35.39250 -34.48848 -31.66714 -30.85378 -29.77583 -28.62220 -26.95045 -24.87118 -23.59513 -22.75352 -22.50965 -21.75606 -19.27969 -18.76950 -18.41589 -17.70024 -17.10644 -16.76638 -16.59444 -15.96010 -15.53726 -15.32949 -14.69630 -14.59117 -14.52786 -14.38885 -14.02150 -13.71264 -13.15461 -12.94130 -12.80212 -12.71518 -12.60553 -12.13092 -11.99282 -11.55499 -11.43537 -11.16489 -11.08950 -11.03445 -9.63593 -9.21897 -8.82713 -8.49485 -8.08040 -6.22002 -0.18232 0.31470 1.01597 1.23204 1.41634 1.50475 1.54123 1.64611 2.00232 2.24205 2.56040 2.68482 2.87344 3.34904 3.64558 3.76414 3.85178 4.06594 4.28017 4.45583 4.49466 4.60848 4.63337 4.77310 4.96079 4.98904 5.06252 5.17832 5.26732 5.39731 5.47257 5.60212 5.75998 5.82446 5.94258 6.13262 6.23773 6.29418 6.50067 6.82281 6.88128 6.94682 7.06328 7.13342 8.47832 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.004805 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.937029 B = 5825.441993 C = 6885.455521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.031 3.969 3 Si 0.979 3.021 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.491 4.491 8 H 0.077 0.923 9 C 0.042 3.958 10 C -0.149 4.149 11 C -0.150 4.150 12 C -0.187 4.187 13 C -0.167 4.167 14 C 0.086 3.914 15 N -0.661 5.661 16 C 0.168 3.832 17 C -0.117 4.117 18 C -0.064 4.064 19 C 0.177 3.823 20 N -0.526 5.526 21 C 0.012 3.988 22 C -0.100 4.100 23 N -0.343 5.343 24 C -0.029 4.029 25 H 0.280 0.720 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.411 0.589 31 H 0.148 0.852 32 H 0.171 0.829 33 H 0.209 0.791 34 H 0.212 0.788 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.884 -5.803 5.910 11.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.181 4.181 3 Si 0.802 3.198 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.523 4.523 8 H 0.095 0.905 9 C 0.038 3.962 10 C -0.170 4.170 11 C -0.169 4.169 12 C -0.207 4.207 13 C -0.188 4.188 14 C -0.012 4.012 15 N -0.285 5.285 16 C 0.067 3.933 17 C -0.143 4.143 18 C -0.085 4.085 19 C -0.067 4.067 20 N -0.247 5.247 21 C -0.141 4.141 22 C -0.233 4.233 23 N -0.014 5.014 24 C -0.156 4.156 25 H 0.091 0.909 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.249 0.751 31 H 0.166 0.834 32 H 0.189 0.811 33 H 0.225 0.775 34 H 0.228 0.772 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 7.769 -6.484 5.704 11.616 hybrid contribution -0.020 2.168 0.141 2.173 sum 7.749 -4.316 5.845 10.623 Atomic orbital electron populations 1.69881 1.08583 1.29471 1.39468 1.26571 0.95562 1.03932 0.91996 0.85178 0.79359 0.76980 0.78292 1.17978 1.19842 1.19847 1.19412 0.94417 0.90673 1.47783 0.90503 1.17558 0.94242 0.92060 0.92306 1.21087 0.97361 0.96766 1.01737 1.20681 0.99783 0.94016 1.02448 1.20630 0.97010 0.98508 1.04504 1.20682 0.96669 0.96321 1.05146 1.17998 0.87749 0.96053 0.99398 1.41368 1.19436 1.07671 1.60021 1.17037 0.95973 0.88974 0.91338 1.21293 1.00254 0.91547 1.01162 1.20299 0.96524 1.00467 0.91182 1.21201 1.05445 0.82613 0.97403 1.70690 1.17295 1.30455 1.06240 1.23033 1.02509 0.91627 0.96909 1.23276 1.07362 1.01267 0.91374 1.42608 1.34502 1.08852 1.15404 1.21155 1.07305 0.92105 0.95045 0.90914 0.87408 0.87646 0.86272 0.86249 0.75111 0.83387 0.81150 0.77457 0.77170 0.80580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -43.00 10.64 21.82 0.23 -42.77 16 2 C 0.03 1.48 5.40 85.23 0.46 1.94 16 3 Si 0.98 36.87 29.56 68.60 2.03 38.89 16 4 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 5 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 7 C -0.49 -24.12 8.26 23.35 0.19 -23.93 16 8 H 0.08 3.55 7.08 -2.91 -0.02 3.53 16 9 C 0.04 2.11 5.56 -21.16 -0.12 1.99 16 10 C -0.15 -7.48 8.60 22.46 0.19 -7.29 16 11 C -0.15 -6.65 9.96 22.01 0.22 -6.43 16 12 C -0.19 -7.58 10.03 22.40 0.22 -7.36 16 13 C -0.17 -6.74 8.02 22.38 0.18 -6.56 16 14 C 0.09 3.72 6.46 39.05 0.25 3.97 16 15 N -0.66 -24.24 5.36 -179.99 -0.96 -25.21 16 16 C 0.17 5.35 5.81 37.93 0.22 5.58 16 17 C -0.12 -3.49 7.36 22.40 0.16 -3.33 16 18 C -0.06 -1.79 10.09 22.40 0.23 -1.56 16 19 C 0.18 5.43 7.80 134.12 1.05 6.47 16 20 N -0.53 -16.16 11.32 -194.33 -2.20 -18.36 16 21 C 0.01 0.28 11.83 83.73 0.99 1.27 16 22 C -0.10 -2.29 11.76 83.20 0.98 -1.31 16 23 N -0.34 -9.70 2.95 -351.39 -1.04 -10.73 16 24 C -0.03 -0.83 10.86 83.35 0.91 0.07 16 25 H 0.28 13.13 8.30 -92.71 -0.77 12.37 16 26 H 0.11 5.79 6.17 -2.91 -0.02 5.77 16 27 H 0.11 4.18 8.06 -2.91 -0.02 4.16 16 28 H 0.12 4.10 8.06 -2.91 -0.02 4.07 16 29 H 0.12 4.32 5.33 -2.91 -0.02 4.31 16 30 H 0.41 14.69 7.30 -92.71 -0.68 14.01 16 31 H 0.15 4.44 6.68 -2.91 -0.02 4.42 16 32 H 0.17 3.85 8.06 -2.91 -0.02 3.83 16 33 H 0.21 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.21 3.09 8.06 -2.91 -0.02 3.07 16 35 H 0.18 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -59.68 298.17 4.66 -55.03 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: 0.46 Total: 39.62 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 6.14 Total: -36.48 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -3.97 Total: -97.07 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.89 kcal Total: -59.68 4.66 -55.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174278477.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.297 kcal (2) G-P(sol) polarization free energy of solvation -59.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds